Wall clock time and date at job start Tue Mar 31 2020 07:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50692 * 109.47140 * 2 1 4 4 N 1.32276 * 125.90306 * 269.68733 * 3 2 1 5 5 C 1.33251 * 109.83439 * 180.26598 * 4 3 2 6 6 C 1.40618 * 131.78706 * 180.02562 * 5 4 3 7 7 C 1.36306 * 119.41038 * 180.02562 * 6 5 4 8 8 C 1.40240 * 119.60775 * 359.97438 * 7 6 5 9 9 Cl 1.73597 * 119.95102 * 180.02562 * 8 7 6 10 10 C 1.35379 * 120.09486 * 0.02562 * 8 7 6 11 11 N 1.36015 * 120.61713 * 359.97438 * 10 8 7 12 12 C 1.38300 * 132.38169 * 179.97438 * 11 10 8 13 13 C 1.41663 * 126.79948 * 0.02603 * 12 11 10 14 14 O 1.21820 * 120.00058 * 260.30449 * 13 12 11 15 15 N 1.34780 * 120.00085 * 80.29557 * 13 12 11 16 16 C 1.36916 * 120.00178 * 185.12829 * 15 13 12 17 17 H 1.07992 * 119.99626 * 0.02562 * 16 15 13 18 18 C 1.38954 * 119.99654 * 180.02562 * 16 15 13 19 19 N 1.31426 * 120.00481 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99463 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47246 * 90.00166 * 20 18 16 22 22 H 1.48505 * 109.46564 * 210.00077 * 20 18 16 23 23 H 1.48497 * 109.47045 * 329.99952 * 20 18 16 24 24 H 1.09001 * 109.47282 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47029 * 300.00423 * 1 2 3 26 26 H 1.09000 * 109.47062 * 59.99792 * 1 2 3 27 27 H 1.08998 * 109.46588 * 239.99732 * 2 1 3 28 28 H 1.08996 * 109.46621 * 120.00054 * 2 1 3 29 29 H 1.08002 * 120.29910 * 359.96840 * 6 5 4 30 30 H 1.07998 * 120.19395 * 179.97438 * 7 6 5 31 31 H 1.08003 * 119.69172 * 180.02562 * 10 8 7 32 32 H 0.96999 * 119.99985 * 5.13141 * 15 13 12 33 33 H 0.97003 * 120.00389 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2964 2.1501 -1.0714 5 6 2.7268 3.3560 -0.7026 6 6 3.1294 4.4766 -1.4507 7 6 3.5321 5.6054 -0.8015 8 6 3.5386 5.6332 0.6006 9 17 4.0492 7.0664 1.4367 10 6 3.1474 4.5441 1.3031 11 7 2.7443 3.4143 0.6619 12 6 2.3046 2.1870 1.1234 13 6 2.1602 1.7910 2.4758 14 8 3.0203 1.1109 3.0066 15 7 1.0713 2.1669 3.1755 16 6 0.9804 1.8744 4.5100 17 1 1.7815 1.3429 5.0020 18 6 -0.1425 2.2615 5.2311 19 7 -1.1176 2.9079 4.6322 20 14 -0.2661 1.8631 7.0520 21 1 0.3190 2.9754 7.8430 22 1 -1.6930 1.6878 7.4245 23 1 0.4772 0.6093 7.3359 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.1205 4.4428 -2.5302 30 1 3.8443 6.4731 -1.3635 31 1 3.1546 4.5728 2.3827 32 1 0.3519 2.6445 2.7336 33 1 -1.9013 3.1784 5.1357 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291988612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:34 Heat of formation + Delta-G solvation = 18.673124 kcal Electronic energy + Delta-G solvation = -20855.380240 eV Core-core repulsion = 17521.225161 eV Total energy + Delta-G solvation = -3334.155080 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.03455 -40.20572 -38.98482 -37.51237 -36.15667 -35.03911 -34.30068 -33.39142 -30.74231 -30.27506 -27.30132 -25.60522 -24.91243 -23.95337 -22.17476 -21.15709 -20.24767 -19.09971 -18.23065 -17.81135 -17.21596 -16.97073 -16.65806 -16.10587 -15.89590 -15.26433 -14.98978 -14.88818 -14.77552 -14.22482 -13.91084 -13.63911 -13.48297 -13.29126 -12.99438 -12.55902 -12.51356 -12.30671 -12.21277 -12.16043 -12.05841 -11.77854 -11.65605 -11.45736 -10.77161 -10.20203 -9.76984 -8.98935 -8.60159 -6.10422 -0.53762 -0.13355 0.49149 1.15026 1.38771 1.42077 1.46635 1.53280 1.94100 2.24025 2.27676 2.93283 3.06171 3.15432 3.25004 3.49824 3.79397 3.91720 4.06310 4.23223 4.34634 4.39930 4.58056 4.72152 4.75243 4.80398 4.97739 5.07400 5.21345 5.27515 5.29452 5.40825 5.75823 5.84349 6.37002 6.57786 6.92839 7.28979 7.82748 8.55757 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.012647 B = 0.006116 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.513663 B = 4576.768796 C = 6222.384133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.045 4.045 3 C 0.114 3.886 4 N -0.498 5.498 5 C 0.212 3.788 6 C -0.060 4.060 7 C -0.075 4.075 8 C -0.045 4.045 9 Cl -0.021 7.021 10 C 0.046 3.954 11 N -0.335 5.335 12 C -0.122 4.122 13 C 0.509 3.491 14 O -0.625 6.625 15 N -0.535 5.535 16 C -0.340 4.340 17 H 0.087 0.913 18 C -0.003 4.003 19 N -0.908 5.908 20 Si 0.999 3.001 21 H -0.267 1.267 22 H -0.268 1.268 23 H -0.269 1.269 24 H 0.086 0.914 25 H 0.031 0.969 26 H 0.065 0.935 27 H 0.106 0.894 28 H 0.065 0.935 29 H 0.201 0.799 30 H 0.201 0.799 31 H 0.154 0.846 32 H 0.393 0.607 33 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.594 7.672 -11.733 14.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.084 4.084 3 C -0.024 4.024 4 N -0.219 5.219 5 C -0.029 4.029 6 C -0.080 4.080 7 C -0.099 4.099 8 C -0.075 4.075 9 Cl 0.008 6.992 10 C -0.079 4.079 11 N -0.007 5.007 12 C -0.237 4.237 13 C 0.295 3.705 14 O -0.513 6.513 15 N -0.168 5.168 16 C -0.469 4.469 17 H 0.105 0.895 18 C -0.205 4.205 19 N -0.547 5.547 20 Si 0.821 3.179 21 H -0.192 1.192 22 H -0.192 1.192 23 H -0.194 1.194 24 H 0.105 0.895 25 H 0.050 0.950 26 H 0.084 0.916 27 H 0.124 0.876 28 H 0.084 0.916 29 H 0.218 0.782 30 H 0.218 0.782 31 H 0.171 0.829 32 H 0.227 0.773 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.901 7.161 -11.957 14.774 hybrid contribution -0.355 0.363 2.038 2.100 sum 4.547 7.524 -9.919 13.254 Atomic orbital electron populations 1.21640 0.92947 1.03270 1.01408 1.20074 0.97183 0.87358 1.03762 1.21667 0.97391 0.97433 0.85902 1.70292 1.21448 1.01320 1.28794 1.21779 1.04304 0.96850 0.79942 1.20762 0.97803 0.87155 1.02248 1.21424 0.98094 1.00103 0.90273 1.20265 1.04372 0.88873 0.93959 1.98404 1.88810 1.33954 1.78028 1.21463 1.01635 0.85146 0.99641 1.42558 1.39748 1.09092 1.09313 1.20066 1.20106 0.87276 0.96230 1.15433 0.84415 0.86242 0.84370 1.90654 1.44739 1.44529 1.71381 1.42006 1.17256 1.48247 1.09330 1.19789 1.05398 1.37116 0.84601 0.89462 1.26190 0.93915 0.95251 1.05107 1.69691 1.08377 1.37304 1.39331 0.84852 0.78129 0.79018 0.75928 1.19237 1.19217 1.19352 0.89500 0.95003 0.91571 0.87552 0.91599 0.78248 0.78208 0.82881 0.77306 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 9.89 71.98 0.71 -3.50 16 2 C -0.05 -1.57 6.28 29.85 0.19 -1.38 16 3 C 0.11 4.55 6.42 42.59 0.27 4.82 16 4 N -0.50 -18.14 11.25 -180.77 -2.03 -20.17 16 5 C 0.21 6.97 7.77 133.98 1.04 8.01 16 6 C -0.06 -1.27 10.10 22.40 0.23 -1.04 16 7 C -0.08 -1.33 9.87 22.31 0.22 -1.11 16 8 C -0.04 -1.09 6.28 22.10 0.14 -0.95 16 9 Cl -0.02 -0.44 28.95 -2.72 -0.08 -0.52 16 10 C 0.05 1.54 10.58 83.38 0.88 2.42 16 11 N -0.34 -12.76 2.96 -344.04 -1.02 -13.77 16 12 C -0.12 -5.47 6.52 39.07 0.25 -5.21 16 13 C 0.51 26.57 6.86 85.09 0.58 27.16 16 14 O -0.63 -37.15 16.68 -4.73 -0.08 -37.23 16 15 N -0.54 -28.58 5.27 -315.06 -1.66 -30.24 16 16 C -0.34 -19.13 9.67 84.07 0.81 -18.31 16 17 H 0.09 5.19 7.16 -2.91 -0.02 5.17 16 18 C 0.00 -0.14 5.50 84.93 0.47 0.33 16 19 N -0.91 -48.10 13.05 21.67 0.28 -47.82 16 20 Si 1.00 41.50 29.55 68.60 2.03 43.53 16 21 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 22 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 24 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 25 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 28 H 0.07 2.52 7.94 -2.39 -0.02 2.50 16 29 H 0.20 2.62 8.06 -2.91 -0.02 2.59 16 30 H 0.20 1.69 8.06 -2.91 -0.02 1.67 16 31 H 0.15 5.54 8.06 -2.91 -0.02 5.51 16 32 H 0.39 20.75 7.86 -92.71 -0.73 20.03 16 33 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -70.10 312.77 3.68 -66.43 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.43 Total: 28.56 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 5.80 Total: 11.24 kcal Atomic # 7 Polarization: -107.58 SS G_CDS: -4.43 Total: -112.01 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.08 Total: -37.23 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.08 Total: -0.52 kcal Total: -70.10 3.68 -66.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291988612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.101 kcal (2) G-P(sol) polarization free energy of solvation -70.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds