Wall clock time and date at job start Tue Mar 31 2020 06:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99757 * 2 1 4 4 H 1.48498 * 109.47179 * 239.99939 * 3 2 1 5 5 H 1.48498 * 109.47254 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47193 * 119.99914 * 3 2 1 7 7 C 1.37872 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00231 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47229 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99938 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00276 * 180.02562 * 11 10 9 14 14 C 1.38971 * 120.00222 * 180.02562 * 13 11 10 15 15 N 1.30274 * 126.06278 * 0.02562 * 14 13 11 16 16 N 1.26102 * 117.74146 * 179.73751 * 15 14 13 17 17 C 1.30581 * 117.62512 * 359.97438 * 16 15 14 18 18 C 1.47109 * 126.10043 * 180.02562 * 17 16 15 19 19 C 1.36258 * 125.95801 * 359.69773 * 18 17 16 20 20 C 1.40824 * 106.72517 * 179.90859 * 19 18 17 21 21 C 1.34795 * 107.07073 * 0.34695 * 20 19 18 22 22 O 1.34322 * 108.72215 * 359.78381 * 21 20 19 23 23 S 1.76464 * 126.06471 * 179.71184 * 14 13 11 24 24 H 0.96998 * 120.00489 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46580 * 60.00448 * 9 7 2 26 26 H 1.08994 * 109.47199 * 300.00227 * 9 7 2 27 27 H 1.09005 * 109.47027 * 60.00449 * 10 9 7 28 28 H 1.08999 * 109.47682 * 300.00710 * 10 9 7 29 29 H 0.96994 * 120.00219 * 359.97438 * 13 11 10 30 30 H 1.07998 * 126.64199 * 0.03227 * 19 18 17 31 31 H 1.08001 * 126.46542 * 180.13608 * 20 19 18 32 32 H 1.08001 * 125.63726 * 179.76391 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4920 -4.9671 -0.0025 12 8 0.2791 -4.9672 -0.0024 13 7 2.1659 -6.1343 -0.0031 14 6 1.4711 -7.3378 -0.0042 15 7 0.1757 -7.4755 -0.0052 16 7 -0.2901 -8.6474 -0.0113 17 6 0.5615 -9.6373 -0.0166 18 6 0.2256 -11.0695 -0.0246 19 6 -1.0309 -11.5967 -0.0219 20 6 -0.8829 -12.9971 -0.0342 21 6 0.4401 -13.2551 -0.0359 22 8 1.1068 -12.0891 -0.0301 23 16 2.1872 -8.9507 -0.0123 24 1 -0.4851 0.8400 -0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 2.8727 -3.6047 0.8878 28 1 2.8715 -3.6038 -0.8922 29 1 3.1359 -6.1343 -0.0035 30 1 -1.9605 -11.0470 -0.0141 31 1 -1.6792 -13.7267 -0.0378 32 1 0.8897 -14.2371 -0.0408 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292391736.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:43 Heat of formation + Delta-G solvation = 50.683106 kcal Electronic energy + Delta-G solvation = -19260.012630 eV Core-core repulsion = 15929.289314 eV Total energy + Delta-G solvation = -3330.723316 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.91860 -41.18346 -39.49524 -35.23885 -33.61327 -33.51540 -32.15892 -31.12710 -28.92532 -26.71657 -25.47528 -23.31706 -22.17658 -21.82650 -20.72497 -19.71490 -19.19571 -17.96618 -17.26221 -16.69635 -16.65849 -15.96077 -15.81467 -15.24131 -14.84107 -14.49211 -13.68754 -13.59109 -13.30661 -13.24762 -12.95401 -12.82916 -12.26628 -11.52960 -11.33283 -10.96350 -10.82993 -10.68661 -10.43145 -10.37798 -10.13769 -10.08952 -9.80450 -9.40893 -9.29173 -9.19431 -8.39167 -8.27265 -6.02055 -4.07886 -0.09964 0.27623 0.90371 1.40823 2.15991 2.19776 2.63950 2.78355 3.03642 3.31020 3.36315 3.37520 4.05454 4.39638 4.50832 4.60084 4.73819 4.77950 5.25193 5.32948 5.42741 5.48331 5.62094 5.92569 5.98456 6.02724 6.05239 6.59439 6.62454 7.10584 7.64852 7.72588 7.97152 8.16411 8.33727 8.54462 8.99295 9.56292 11.08678 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.061923 B = 0.002517 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.066208 B =11122.273309 C =11553.863629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.531 4.531 8 H 0.057 0.943 9 C 0.035 3.965 10 C -0.121 4.121 11 C 0.499 3.501 12 O -0.454 6.454 13 N -0.630 5.630 14 C 0.273 3.727 15 N -0.258 5.258 16 N -0.206 5.206 17 C 0.066 3.934 18 C 0.046 3.954 19 C -0.136 4.136 20 C -0.213 4.213 21 C -0.017 4.017 22 O -0.170 6.170 23 S 0.083 5.917 24 H 0.263 0.737 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.425 0.575 30 H 0.162 0.838 31 H 0.158 0.842 32 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.404 -26.853 -0.056 27.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.570 4.570 8 H 0.075 0.925 9 C -0.003 4.003 10 C -0.162 4.162 11 C 0.285 3.715 12 O -0.319 6.319 13 N -0.283 5.283 14 C -0.096 4.096 15 N -0.103 5.103 16 N -0.045 5.045 17 C -0.212 4.212 18 C -0.008 4.008 19 C -0.160 4.160 20 C -0.232 4.232 21 C -0.087 4.087 22 O -0.065 6.065 23 S 0.324 5.676 24 H 0.073 0.927 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.263 0.737 30 H 0.180 0.820 31 H 0.175 0.825 32 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 5.454 -26.302 -0.053 26.862 hybrid contribution 0.893 0.721 0.001 1.148 sum 6.347 -25.581 -0.052 26.356 Atomic orbital electron populations 1.69978 1.06079 1.26922 1.49552 1.25024 0.94845 0.99316 0.95126 0.86618 0.79520 0.83030 0.78560 1.20203 1.21244 1.20209 1.21106 0.92905 0.90743 1.52213 0.92476 1.18971 0.93115 0.89118 0.99059 1.21984 1.00976 0.89831 1.03380 1.22402 0.89463 0.84504 0.75106 1.90845 1.13712 1.85729 1.41620 1.43900 1.10725 1.01461 1.72251 1.27324 0.91586 0.91507 0.99226 1.71807 1.06563 1.11397 1.20551 1.71573 1.28770 0.92477 1.11725 1.25705 0.90307 0.94616 1.10597 1.18271 0.87732 0.83672 1.11101 1.21983 0.97256 0.94097 1.02704 1.21868 0.96943 0.96023 1.08400 1.24285 0.91832 0.88128 1.04432 1.84074 1.36568 1.14148 1.71742 1.85754 1.09299 0.99402 1.73166 0.92730 0.95484 0.95477 0.89254 0.89258 0.73700 0.81994 0.82472 0.77197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -14.52 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.04 0.90 4.26 -27.88 -0.12 0.78 16 10 C -0.12 -2.23 5.64 -27.89 -0.16 -2.39 16 11 C 0.50 9.18 7.79 -10.99 -0.09 9.09 16 12 O -0.45 -10.68 14.69 5.55 0.08 -10.59 16 13 N -0.63 -8.65 5.40 -11.61 -0.06 -8.72 16 14 C 0.27 4.12 8.41 -86.85 -0.73 3.39 16 15 N -0.26 -4.80 9.79 31.05 0.30 -4.50 16 16 N -0.21 -3.45 11.57 32.88 0.38 -3.07 16 17 C 0.07 0.90 7.58 -14.49 -0.11 0.79 16 18 C 0.05 0.53 7.23 -36.70 -0.27 0.27 16 19 C -0.14 -1.38 10.82 -39.32 -0.43 -1.80 16 20 C -0.21 -1.54 10.88 -39.82 -0.43 -1.98 16 21 C -0.02 -0.11 12.08 29.51 0.36 0.24 16 22 O -0.17 -1.67 10.68 4.38 0.05 -1.62 16 23 S 0.08 0.94 23.52 -107.50 -2.53 -1.59 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 26 H 0.03 0.77 8.10 -51.93 -0.42 0.34 16 27 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 29 H 0.42 3.77 8.82 -40.82 -0.36 3.41 16 30 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.16 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.21 0.44 8.06 -52.49 -0.42 0.02 16 LS Contribution 310.58 15.07 4.68 4.68 Total: -1.00 -36.20 310.58 -6.62 -42.82 By element: Atomic # 1 Polarization: 0.31 SS G_CDS: -2.86 Total: -2.55 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -2.38 Total: -4.86 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 1.36 Total: -42.49 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.13 Total: -12.22 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.53 Total: -1.59 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -36.20 -6.62 -42.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292391736.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.505 kcal (2) G-P(sol) polarization free energy of solvation -36.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds