Wall clock time and date at job start Tue Mar 31 2020 06:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99757 * 2 1 4 4 H 1.48498 * 109.47179 * 239.99939 * 3 2 1 5 5 H 1.48498 * 109.47254 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47193 * 119.99914 * 3 2 1 7 7 C 1.37872 * 120.00405 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00231 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.50694 * 109.47229 * 180.02562 * 10 9 7 12 12 O 1.21287 * 119.99938 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00276 * 180.02562 * 11 10 9 14 14 C 1.38971 * 120.00222 * 180.02562 * 13 11 10 15 15 N 1.30274 * 126.06278 * 0.02562 * 14 13 11 16 16 N 1.26102 * 117.74146 * 179.73751 * 15 14 13 17 17 C 1.30581 * 117.62512 * 359.97438 * 16 15 14 18 18 C 1.47109 * 126.10043 * 180.02562 * 17 16 15 19 19 C 1.36258 * 125.95801 * 359.69773 * 18 17 16 20 20 C 1.40824 * 106.72517 * 179.90859 * 19 18 17 21 21 C 1.34795 * 107.07073 * 0.34695 * 20 19 18 22 22 O 1.34322 * 108.72215 * 359.78381 * 21 20 19 23 23 S 1.76464 * 126.06471 * 179.71184 * 14 13 11 24 24 H 0.96998 * 120.00489 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46580 * 60.00448 * 9 7 2 26 26 H 1.08994 * 109.47199 * 300.00227 * 9 7 2 27 27 H 1.09005 * 109.47027 * 60.00449 * 10 9 7 28 28 H 1.08999 * 109.47682 * 300.00710 * 10 9 7 29 29 H 0.96994 * 120.00219 * 359.97438 * 13 11 10 30 30 H 1.07998 * 126.64199 * 0.03227 * 19 18 17 31 31 H 1.08001 * 126.46542 * 180.13608 * 20 19 18 32 32 H 1.08001 * 125.63726 * 179.76391 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4920 -4.9671 -0.0025 12 8 0.2791 -4.9672 -0.0024 13 7 2.1659 -6.1343 -0.0031 14 6 1.4711 -7.3378 -0.0042 15 7 0.1757 -7.4755 -0.0052 16 7 -0.2901 -8.6474 -0.0113 17 6 0.5615 -9.6373 -0.0166 18 6 0.2256 -11.0695 -0.0246 19 6 -1.0309 -11.5967 -0.0219 20 6 -0.8829 -12.9971 -0.0342 21 6 0.4401 -13.2551 -0.0359 22 8 1.1068 -12.0891 -0.0301 23 16 2.1872 -8.9507 -0.0123 24 1 -0.4851 0.8400 -0.0004 25 1 0.6242 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 2.8727 -3.6047 0.8878 28 1 2.8715 -3.6038 -0.8922 29 1 3.1359 -6.1343 -0.0035 30 1 -1.9605 -11.0470 -0.0141 31 1 -1.6792 -13.7267 -0.0378 32 1 0.8897 -14.2371 -0.0408 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292391736.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:42 Heat of formation + Delta-G solvation = 24.192687 kcal Electronic energy + Delta-G solvation = -19261.161340 eV Core-core repulsion = 15929.289314 eV Total energy + Delta-G solvation = -3331.872027 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.61049 -42.35166 -40.89156 -36.56746 -35.59879 -34.26798 -33.32608 -32.76497 -29.96964 -28.19696 -26.90253 -24.71577 -23.26753 -22.74781 -22.02858 -20.81543 -20.25273 -19.10084 -18.73056 -18.01434 -17.57704 -17.27360 -17.05137 -16.48478 -16.20797 -16.09559 -15.26512 -14.64811 -14.45434 -14.25018 -14.04454 -13.91585 -13.55126 -13.31184 -12.91596 -12.73107 -12.53011 -11.95720 -11.93672 -11.68359 -11.51278 -11.33850 -11.32022 -10.91376 -10.86491 -10.55684 -10.25336 -9.19908 -8.17460 -6.31819 -1.10120 -0.76169 -0.14865 0.55530 1.30078 1.38050 1.43989 1.48021 1.55627 1.61019 1.74053 1.81393 2.43524 3.13262 3.16207 3.52268 3.79021 3.94969 3.96338 4.15537 4.43565 4.50955 4.67233 4.81118 4.94450 4.97470 5.01269 5.44319 5.50266 5.59915 5.84398 5.91216 5.97370 6.14937 6.83078 6.92826 7.38841 7.44899 8.95030 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.061923 B = 0.002517 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 452.066208 B =11122.273309 C =11553.863629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.009 4.009 3 Si 0.975 3.025 4 H -0.261 1.261 5 H -0.292 1.292 6 H -0.261 1.261 7 C -0.541 4.541 8 H 0.083 0.917 9 C 0.037 3.963 10 C -0.107 4.107 11 C 0.507 3.493 12 O -0.519 6.519 13 N -0.609 5.609 14 C 0.240 3.760 15 N -0.309 5.309 16 N -0.252 5.252 17 C 0.068 3.932 18 C 0.003 3.997 19 C -0.134 4.134 20 C -0.224 4.224 21 C 0.011 3.989 22 O -0.178 6.178 23 S 0.183 5.817 24 H 0.262 0.738 25 H -0.016 1.016 26 H -0.016 1.016 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.449 0.551 30 H 0.155 0.845 31 H 0.186 0.814 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.848 -29.454 -0.071 31.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.798 3.202 4 H -0.186 1.186 5 H -0.218 1.218 6 H -0.186 1.186 7 C -0.579 4.579 8 H 0.101 0.899 9 C 0.000 4.000 10 C -0.147 4.147 11 C 0.294 3.706 12 O -0.389 6.389 13 N -0.264 5.264 14 C -0.129 4.129 15 N -0.153 5.153 16 N -0.091 5.091 17 C -0.210 4.210 18 C -0.051 4.051 19 C -0.159 4.159 20 C -0.243 4.243 21 C -0.058 4.058 22 O -0.073 6.073 23 S 0.426 5.574 24 H 0.071 0.929 25 H 0.002 0.998 26 H 0.002 0.998 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.292 0.708 30 H 0.173 0.827 31 H 0.203 0.797 32 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 8.981 -28.945 -0.067 30.306 hybrid contribution -0.191 1.137 0.004 1.153 sum 8.790 -27.808 -0.063 29.164 Atomic orbital electron populations 1.70178 1.08413 1.27882 1.51426 1.26157 0.95676 1.04077 0.94722 0.85361 0.77980 0.77280 0.79544 1.18560 1.21768 1.18574 1.21667 0.94222 0.91209 1.50784 0.89915 1.18754 0.93814 0.92446 0.95020 1.21732 0.99286 0.87189 1.06531 1.22223 0.88517 0.85807 0.74007 1.90834 1.16361 1.86818 1.44881 1.43273 1.11553 1.00160 1.71423 1.27387 0.91758 0.93332 1.00438 1.71732 1.09113 1.12970 1.21525 1.71536 1.29937 0.92678 1.14939 1.26232 0.91776 0.95489 1.07491 1.18177 0.88607 0.83335 1.14953 1.22264 0.96748 0.95931 1.00932 1.22226 0.98408 0.94866 1.08757 1.25359 0.91716 0.88571 1.00153 1.84073 1.36689 1.14627 1.71950 1.85283 1.05945 0.94878 1.71325 0.92922 0.99794 0.99784 0.85931 0.85941 0.70798 0.82695 0.79672 0.72331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.50 13.29 21.44 0.28 -59.21 16 2 C -0.01 -0.51 5.46 84.65 0.46 -0.05 16 3 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 4 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 5 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 6 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 7 C -0.54 -29.70 9.11 25.60 0.23 -29.47 16 8 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 9 C 0.04 2.01 4.26 29.85 0.13 2.14 16 10 C -0.11 -3.91 5.64 29.84 0.17 -3.74 16 11 C 0.51 19.14 7.79 87.66 0.68 19.82 16 12 O -0.52 -26.18 14.69 -3.05 -0.04 -26.22 16 13 N -0.61 -16.37 5.40 -309.04 -1.67 -18.04 16 14 C 0.24 7.31 8.41 179.03 1.51 8.82 16 15 N -0.31 -12.13 9.79 -55.67 -0.54 -12.68 16 16 N -0.25 -8.90 11.57 -49.88 -0.58 -9.48 16 17 C 0.07 1.85 7.58 87.21 0.66 2.52 16 18 C 0.00 0.06 7.23 24.14 0.17 0.24 16 19 C -0.13 -2.61 10.82 22.44 0.24 -2.37 16 20 C -0.22 -2.57 10.88 22.11 0.24 -2.33 16 21 C 0.01 0.10 12.08 67.03 0.81 0.91 16 22 O -0.18 -2.99 10.68 -7.24 -0.08 -3.07 16 23 S 0.18 3.85 23.52 -56.49 -1.33 2.53 16 24 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 25 H -0.02 -1.01 8.10 -2.39 -0.02 -1.03 16 26 H -0.02 -1.00 8.10 -2.39 -0.02 -1.02 16 27 H 0.12 3.66 8.14 -2.38 -0.02 3.64 16 28 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 29 H 0.45 6.92 8.82 -92.71 -0.82 6.10 16 30 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 31 H 0.19 1.00 8.06 -2.91 -0.02 0.98 16 32 H 0.26 -0.51 8.06 -2.91 -0.02 -0.53 16 Total: -1.00 -86.97 310.58 3.74 -83.24 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: 0.36 Total: 0.82 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 5.31 Total: -3.51 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -2.51 Total: -99.41 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.12 Total: -29.29 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.33 Total: 2.53 kcal Total: -86.97 3.74 -83.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292391736.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.429 kcal (2) G-P(sol) polarization free energy of solvation -86.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds