Wall clock time and date at job start Tue Mar 31 2020 06:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46861 * 332.72079 * 3 2 1 5 5 C 1.37101 * 119.99442 * 264.13362 * 4 3 2 6 6 H 1.07993 * 119.99931 * 197.44048 * 5 4 3 7 7 C 1.38953 * 119.99937 * 17.44540 * 5 4 3 8 8 N 1.31404 * 120.00368 * 21.51537 * 7 5 4 9 9 Si 1.86803 * 119.99626 * 201.51920 * 7 5 4 10 10 H 1.48498 * 109.47083 * 59.99773 * 9 7 5 11 11 H 1.48500 * 109.46881 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46901 * 299.99883 * 9 7 5 13 13 C 1.34771 * 120.00190 * 84.14316 * 4 3 2 14 14 O 1.21291 * 119.99940 * 180.02562 * 13 4 3 15 15 C 1.50698 * 120.00018 * 359.97438 * 13 4 3 16 16 O 1.42900 * 109.47020 * 180.02562 * 15 13 4 17 17 C 1.35919 * 117.00024 * 180.02562 * 16 15 13 18 18 C 1.38719 * 120.04291 * 0.27229 * 17 16 15 19 19 C 1.38147 * 119.95546 * 180.23302 * 18 17 16 20 20 C 1.38361 * 120.04541 * 359.49461 * 19 18 17 21 21 Cl 1.73603 * 119.96126 * 180.27564 * 20 19 18 22 22 C 1.38370 * 120.08402 * 0.25671 * 20 19 18 23 23 C 1.38140 * 120.04064 * 359.97438 * 22 20 19 24 24 H 4.40638 * 5.51345 * 179.97438 * 4 1 2 25 25 H 1.08995 * 109.46937 * 212.71421 * 3 2 1 26 26 H 1.08997 * 109.46887 * 92.71757 * 3 2 1 27 27 H 0.96995 * 120.00357 * 179.97438 * 8 7 5 28 28 H 1.09006 * 109.47168 * 60.00721 * 15 13 4 29 29 H 1.08994 * 109.47719 * 300.00352 * 15 13 4 30 30 H 1.08000 * 120.02426 * 359.97438 * 18 17 16 31 31 H 1.08004 * 119.97481 * 179.77341 * 19 18 17 32 32 H 1.08000 * 119.97591 * 180.02562 * 22 20 19 33 33 H 1.08005 * 120.02295 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.2268 0.6331 5 6 3.4778 -1.2236 1.9605 6 1 4.0906 -2.0171 2.3618 7 6 3.0366 -0.1995 2.7896 8 7 1.9850 0.5124 2.4519 9 14 3.9386 0.1652 4.3842 10 1 5.3471 0.5278 4.0844 11 1 3.2737 1.2951 5.0817 12 1 3.9116 -1.0378 5.2545 13 6 3.2477 -2.3588 -0.0894 14 8 3.6520 -3.3751 0.4348 15 6 2.8705 -2.3623 -1.5484 16 8 3.0756 -3.6685 -2.0904 17 6 2.7817 -3.8440 -3.4057 18 6 2.3111 -2.7793 -4.1603 19 6 2.0084 -2.9609 -5.4959 20 6 2.1842 -4.2011 -6.0837 21 17 1.8099 -4.4250 -7.7640 22 6 2.6584 -5.2630 -5.3340 23 6 2.9577 -5.0866 -3.9970 24 1 -1.0498 -0.0002 0.0003 25 1 3.0090 0.8654 0.5554 26 1 3.0093 0.0495 -1.0265 27 1 1.6768 1.2270 3.0308 28 1 3.4902 -1.6443 -2.0857 29 1 1.8212 -2.0866 -1.6532 30 1 2.1775 -1.8102 -3.7029 31 1 1.6385 -2.1331 -6.0827 32 1 2.7954 -6.2302 -5.7947 33 1 3.3282 -5.9156 -3.4122 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305901337.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:58 Heat of formation + Delta-G solvation = 20.243665 kcal Electronic energy + Delta-G solvation = -20151.192789 eV Core-core repulsion = 16784.813062 eV Total energy + Delta-G solvation = -3366.379727 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.21649 -38.73302 -37.42794 -36.20595 -35.20281 -32.29986 -31.39754 -31.27907 -29.93893 -28.05300 -26.48316 -24.52844 -22.94203 -22.15276 -19.42679 -18.37422 -18.02022 -16.79350 -16.53977 -16.26003 -15.87729 -15.66707 -14.75625 -14.44774 -14.23430 -14.06594 -13.63153 -13.37472 -13.27454 -12.57277 -12.46045 -12.32893 -12.11663 -11.73137 -11.58140 -11.34049 -11.05726 -10.81566 -10.66919 -10.58211 -10.39943 -9.50571 -9.39080 -9.22524 -9.04103 -8.56035 -8.13224 -8.01046 -6.44773 -3.98043 1.12807 1.16953 2.06942 3.04371 3.11350 3.19986 3.27157 3.53010 3.56288 3.77718 3.89511 4.11074 4.61694 4.69164 4.85190 4.92717 5.02211 5.22054 5.28634 5.34935 5.41398 5.46418 5.65650 5.80157 5.90647 6.11138 6.13176 6.21174 6.48715 6.59611 6.88953 7.39578 7.46403 7.90201 8.29210 8.66469 8.99315 9.19300 9.72267 10.55976 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.033516 B = 0.003277 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.227737 B = 8542.184627 C = 9160.759887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.122 4.122 3 C 0.228 3.772 4 N -0.433 5.433 5 C -0.317 4.317 6 H 0.107 0.893 7 C 0.034 3.966 8 N -0.860 5.860 9 Si 0.925 3.075 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.272 1.272 13 C 0.450 3.550 14 O -0.561 6.561 15 C 0.048 3.952 16 O -0.281 6.281 17 C 0.146 3.854 18 C -0.202 4.202 19 C -0.067 4.067 20 C -0.082 4.082 21 Cl -0.081 7.081 22 C -0.070 4.070 23 C -0.143 4.143 24 H 0.201 0.799 25 H 0.115 0.885 26 H 0.061 0.939 27 H 0.271 0.729 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.061 -1.973 -15.211 15.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.124 4.124 3 C 0.105 3.895 4 N -0.153 5.153 5 C -0.444 4.444 6 H 0.124 0.876 7 C -0.171 4.171 8 N -0.498 5.498 9 Si 0.751 3.249 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.237 3.763 14 O -0.443 6.443 15 C -0.031 4.031 16 O -0.192 6.192 17 C 0.099 3.901 18 C -0.221 4.221 19 C -0.086 4.086 20 C -0.109 4.109 21 Cl -0.052 7.052 22 C -0.089 4.089 23 C -0.161 4.161 24 H 0.218 0.782 25 H 0.133 0.867 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.157 0.843 31 H 0.152 0.848 32 H 0.155 0.845 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.891 -2.471 -14.831 15.062 hybrid contribution -0.254 0.672 0.641 0.963 sum -1.145 -1.799 -14.191 14.350 Atomic orbital electron populations 1.24328 0.95418 1.01871 1.05371 1.23139 0.94330 0.98810 0.96109 1.18328 0.84394 0.91091 0.95683 1.43611 1.56003 1.05939 1.09727 1.19650 1.30415 1.11125 0.83232 0.87564 1.25314 0.95039 0.97252 0.99506 1.70067 1.19447 1.21408 1.38847 0.86015 0.79581 0.78199 0.81080 1.19738 1.20959 1.19727 1.19435 0.85856 0.84300 0.86724 1.90576 1.49917 1.31751 1.72056 1.22701 1.01893 0.82892 0.95583 1.86226 1.80500 1.32202 1.20266 1.19284 0.92918 0.94044 0.83864 1.21315 1.06449 0.99626 0.94717 1.20806 0.97741 0.95751 0.94282 1.20719 1.08493 0.95932 0.85747 1.98346 1.93436 1.97400 1.16055 1.20812 0.97140 0.98204 0.92717 1.20422 1.05248 0.96163 0.94314 0.78227 0.86741 0.92105 0.91879 0.90354 0.89912 0.84329 0.84807 0.84463 0.84046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.89 19.25 29.55 0.57 -4.32 16 2 C -0.12 -2.56 10.88 -37.12 -0.40 -2.97 16 3 C 0.23 4.70 4.91 -6.82 -0.03 4.66 16 4 N -0.43 -10.49 2.60 -117.93 -0.31 -10.79 16 5 C -0.32 -8.44 9.33 -14.93 -0.14 -8.58 16 6 H 0.11 2.98 7.38 -52.49 -0.39 2.60 16 7 C 0.03 0.85 4.87 -17.47 -0.09 0.76 16 8 N -0.86 -21.62 9.48 55.50 0.53 -21.10 16 9 Si 0.93 19.76 29.60 -169.99 -5.03 14.73 16 10 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 11 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 C 0.45 10.75 7.64 -10.99 -0.08 10.67 16 14 O -0.56 -15.68 16.15 -14.36 -0.23 -15.91 16 15 C 0.05 0.87 3.83 36.00 0.14 1.01 16 16 O -0.28 -5.25 9.67 -39.39 -0.38 -5.63 16 17 C 0.15 2.20 6.69 -39.22 -0.26 1.93 16 18 C -0.20 -2.59 9.04 -39.44 -0.36 -2.95 16 19 C -0.07 -0.76 9.82 -39.57 -0.39 -1.15 16 20 C -0.08 -0.94 6.32 -39.49 -0.25 -1.19 16 21 Cl -0.08 -0.83 28.95 -51.86 -1.50 -2.33 16 22 C -0.07 -0.78 9.82 -39.57 -0.39 -1.17 16 23 C -0.14 -1.86 9.99 -39.44 -0.39 -2.26 16 24 H 0.20 3.15 7.80 -54.10 -0.42 2.73 16 25 H 0.11 2.48 6.44 -51.93 -0.33 2.15 16 26 H 0.06 0.99 6.69 -51.93 -0.35 0.65 16 27 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 28 H 0.08 1.19 6.92 -51.93 -0.36 0.83 16 29 H 0.08 1.41 7.04 -51.93 -0.37 1.05 16 30 H 0.14 1.60 6.30 -52.49 -0.33 1.27 16 31 H 0.13 1.24 8.06 -52.48 -0.42 0.81 16 32 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.14 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 311.19 15.07 4.69 4.69 Total: -1.00 -30.68 311.19 -7.27 -37.94 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -2.95 Total: 3.94 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -2.08 Total: -5.54 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.22 Total: -31.89 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.61 Total: -21.54 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.68 -7.27 -37.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305901337.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.185 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds