Wall clock time and date at job start Tue Mar 31 2020 06:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46861 * 332.72079 * 3 2 1 5 5 C 1.37101 * 119.99442 * 264.13362 * 4 3 2 6 6 H 1.07993 * 119.99931 * 197.44048 * 5 4 3 7 7 C 1.38953 * 119.99937 * 17.44540 * 5 4 3 8 8 N 1.31404 * 120.00368 * 21.51537 * 7 5 4 9 9 Si 1.86803 * 119.99626 * 201.51920 * 7 5 4 10 10 H 1.48498 * 109.47083 * 59.99773 * 9 7 5 11 11 H 1.48500 * 109.46881 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46901 * 299.99883 * 9 7 5 13 13 C 1.34771 * 120.00190 * 84.14316 * 4 3 2 14 14 O 1.21291 * 119.99940 * 180.02562 * 13 4 3 15 15 C 1.50698 * 120.00018 * 359.97438 * 13 4 3 16 16 O 1.42900 * 109.47020 * 180.02562 * 15 13 4 17 17 C 1.35919 * 117.00024 * 180.02562 * 16 15 13 18 18 C 1.38719 * 120.04291 * 0.27229 * 17 16 15 19 19 C 1.38147 * 119.95546 * 180.23302 * 18 17 16 20 20 C 1.38361 * 120.04541 * 359.49461 * 19 18 17 21 21 Cl 1.73603 * 119.96126 * 180.27564 * 20 19 18 22 22 C 1.38370 * 120.08402 * 0.25671 * 20 19 18 23 23 C 1.38140 * 120.04064 * 359.97438 * 22 20 19 24 24 H 4.40638 * 5.51345 * 179.97438 * 4 1 2 25 25 H 1.08995 * 109.46937 * 212.71421 * 3 2 1 26 26 H 1.08997 * 109.46887 * 92.71757 * 3 2 1 27 27 H 0.96995 * 120.00357 * 179.97438 * 8 7 5 28 28 H 1.09006 * 109.47168 * 60.00721 * 15 13 4 29 29 H 1.08994 * 109.47719 * 300.00352 * 15 13 4 30 30 H 1.08000 * 120.02426 * 359.97438 * 18 17 16 31 31 H 1.08004 * 119.97481 * 179.77341 * 19 18 17 32 32 H 1.08000 * 119.97591 * 180.02562 * 22 20 19 33 33 H 1.08005 * 120.02295 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1349 -1.2268 0.6331 5 6 3.4778 -1.2236 1.9605 6 1 4.0906 -2.0171 2.3618 7 6 3.0366 -0.1995 2.7896 8 7 1.9850 0.5124 2.4519 9 14 3.9386 0.1652 4.3842 10 1 5.3471 0.5278 4.0844 11 1 3.2737 1.2951 5.0817 12 1 3.9116 -1.0378 5.2545 13 6 3.2477 -2.3588 -0.0894 14 8 3.6520 -3.3751 0.4348 15 6 2.8705 -2.3623 -1.5484 16 8 3.0756 -3.6685 -2.0904 17 6 2.7817 -3.8440 -3.4057 18 6 2.3111 -2.7793 -4.1603 19 6 2.0084 -2.9609 -5.4959 20 6 2.1842 -4.2011 -6.0837 21 17 1.8099 -4.4250 -7.7640 22 6 2.6584 -5.2630 -5.3340 23 6 2.9577 -5.0866 -3.9970 24 1 -1.0498 -0.0002 0.0003 25 1 3.0090 0.8654 0.5554 26 1 3.0093 0.0495 -1.0265 27 1 1.6768 1.2270 3.0308 28 1 3.4902 -1.6443 -2.0857 29 1 1.8212 -2.0866 -1.6532 30 1 2.1775 -1.8102 -3.7029 31 1 1.6385 -2.1331 -6.0827 32 1 2.7954 -6.2302 -5.7947 33 1 3.3282 -5.9156 -3.4122 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305901337.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:57 Heat of formation + Delta-G solvation = 3.880667 kcal Electronic energy + Delta-G solvation = -20151.902341 eV Core-core repulsion = 16784.813062 eV Total energy + Delta-G solvation = -3367.089280 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.43353 -40.32713 -38.59456 -37.22680 -36.96127 -34.11327 -33.09052 -32.26085 -31.05593 -29.49555 -28.13077 -26.29570 -23.95114 -23.22797 -21.09310 -19.78125 -19.48732 -18.47497 -17.87806 -17.51588 -17.24475 -17.05638 -16.35988 -15.91554 -15.63258 -15.47713 -14.76617 -14.53973 -14.50194 -14.10746 -14.04600 -13.67703 -13.53439 -13.18483 -12.85505 -12.79038 -12.50364 -12.30638 -12.15754 -11.72643 -11.70096 -11.22223 -11.11993 -10.69952 -10.40343 -10.14257 -9.90479 -9.16617 -8.36479 -5.97909 0.17624 0.21872 1.18186 1.35832 1.43239 1.51517 1.70625 1.87582 2.21441 2.30471 2.37734 2.58870 2.99809 3.18707 3.67823 3.77243 3.85454 3.88309 4.00035 4.14604 4.17164 4.34972 4.49626 4.62135 4.91191 4.93550 4.95363 5.20114 5.24698 5.40055 5.44614 5.53915 5.95433 6.25831 6.42521 7.07859 7.11412 7.31240 7.86666 8.61616 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.033516 B = 0.003277 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.227737 B = 8542.184627 C = 9160.759887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.161 4.161 3 C 0.228 3.772 4 N -0.440 5.440 5 C -0.357 4.357 6 H 0.076 0.924 7 C 0.009 3.991 8 N -0.866 5.866 9 Si 0.985 3.015 10 H -0.265 1.265 11 H -0.271 1.271 12 H -0.281 1.281 13 C 0.434 3.566 14 O -0.618 6.618 15 C 0.065 3.935 16 O -0.314 6.314 17 C 0.115 3.885 18 C -0.201 4.201 19 C -0.065 4.065 20 C -0.083 4.083 21 Cl -0.067 7.067 22 C -0.065 4.065 23 C -0.152 4.152 24 H 0.233 0.767 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.275 0.725 28 H 0.112 0.888 29 H 0.097 0.903 30 H 0.152 0.848 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.991 -0.835 -17.005 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.162 4.162 3 C 0.106 3.894 4 N -0.159 5.159 5 C -0.484 4.484 6 H 0.093 0.907 7 C -0.195 4.195 8 N -0.502 5.502 9 Si 0.808 3.192 10 H -0.190 1.190 11 H -0.196 1.196 12 H -0.207 1.207 13 C 0.224 3.776 14 O -0.504 6.504 15 C -0.013 4.013 16 O -0.227 6.227 17 C 0.069 3.931 18 C -0.220 4.220 19 C -0.084 4.084 20 C -0.110 4.110 21 Cl -0.038 7.038 22 C -0.084 4.084 23 C -0.171 4.171 24 H 0.249 0.751 25 H 0.117 0.883 26 H 0.122 0.878 27 H 0.085 0.915 28 H 0.130 0.870 29 H 0.114 0.886 30 H 0.169 0.831 31 H 0.176 0.824 32 H 0.179 0.821 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.844 -1.294 -16.666 16.817 hybrid contribution -0.043 0.285 1.089 1.127 sum -1.888 -1.008 -15.577 15.723 Atomic orbital electron populations 1.25170 0.96375 1.00161 1.03853 1.23386 0.94925 1.00340 0.97548 1.18460 0.84709 0.88826 0.97415 1.43801 1.55557 1.07348 1.09231 1.19546 1.32017 1.11686 0.85159 0.90653 1.25952 0.95270 0.96317 1.01982 1.70148 1.19406 1.21061 1.39618 0.85134 0.78880 0.77748 0.77390 1.19004 1.19584 1.20678 1.20396 0.84719 0.83391 0.89118 1.90522 1.52331 1.33700 1.73874 1.22443 1.03012 0.83969 0.91855 1.86162 1.81755 1.32254 1.22543 1.19570 0.95204 0.95604 0.82724 1.21460 1.05871 0.99483 0.95174 1.21077 0.96958 0.96522 0.93831 1.20914 1.07569 0.96028 0.86461 1.98357 1.93260 1.97362 1.14869 1.21041 0.96136 0.99348 0.91835 1.20590 1.05499 0.95794 0.95197 0.75083 0.88290 0.87795 0.91500 0.87022 0.88565 0.83082 0.82390 0.82109 0.84043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -8.72 19.25 74.32 1.43 -7.29 16 2 C -0.16 -6.53 10.88 31.13 0.34 -6.19 16 3 C 0.23 9.25 4.91 84.58 0.42 9.66 16 4 N -0.44 -21.79 2.60 -645.42 -1.68 -23.47 16 5 C -0.36 -19.66 9.33 84.04 0.78 -18.88 16 6 H 0.08 4.51 7.38 -2.91 -0.02 4.49 16 7 C 0.01 0.47 4.87 84.93 0.41 0.88 16 8 N -0.87 -43.17 9.48 21.66 0.21 -42.97 16 9 Si 0.98 40.73 29.60 68.60 2.03 42.76 16 10 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 11 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 12 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 13 C 0.43 21.38 7.64 87.66 0.67 22.05 16 14 O -0.62 -36.43 16.15 15.97 0.26 -36.17 16 15 C 0.07 2.35 3.83 71.24 0.27 2.62 16 16 O -0.31 -11.90 9.67 -73.60 -0.71 -12.61 16 17 C 0.11 3.38 6.69 22.50 0.15 3.53 16 18 C -0.20 -4.75 9.04 22.36 0.20 -4.55 16 19 C -0.07 -1.30 9.82 22.28 0.22 -1.08 16 20 C -0.08 -1.68 6.32 22.33 0.14 -1.54 16 21 Cl -0.07 -1.19 28.95 -2.72 -0.08 -1.27 16 22 C -0.07 -1.33 9.82 22.28 0.22 -1.11 16 23 C -0.15 -3.88 9.99 22.36 0.22 -3.65 16 24 H 0.23 6.56 7.80 -4.43 -0.03 6.52 16 25 H 0.10 4.28 6.44 -2.39 -0.02 4.27 16 26 H 0.10 3.20 6.69 -2.39 -0.02 3.18 16 27 H 0.27 12.97 8.31 -92.71 -0.77 12.20 16 28 H 0.11 3.18 6.92 -2.38 -0.02 3.17 16 29 H 0.10 3.17 7.04 -2.39 -0.02 3.15 16 30 H 0.15 3.09 6.30 -2.91 -0.02 3.07 16 31 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 32 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 33 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -68.77 311.19 6.64 -62.12 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 1.14 Total: 17.16 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 5.48 Total: -5.54 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -1.47 Total: -66.44 kcal Atomic # 8 Polarization: -48.33 SS G_CDS: -0.45 Total: -48.79 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -68.77 6.64 -62.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305901337.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.004 kcal (2) G-P(sol) polarization free energy of solvation -68.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds