Wall clock time and date at job start Tue Mar 31 2020 06:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17409 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46834 * 167.52531 * 3 2 1 5 5 C 1.36909 * 119.99917 * 284.64776 * 4 3 2 6 6 H 1.08004 * 119.99629 * 288.36624 * 5 4 3 7 7 C 1.39013 * 120.00249 * 108.37082 * 5 4 3 8 8 N 1.31387 * 120.00163 * 63.66188 * 7 5 4 9 9 Si 1.86802 * 120.00071 * 243.66179 * 7 5 4 10 10 H 1.48499 * 109.47068 * 89.99509 * 9 7 5 11 11 H 1.48503 * 109.47100 * 210.00079 * 9 7 5 12 12 H 1.48505 * 109.46794 * 329.99952 * 9 7 5 13 13 C 1.34779 * 119.99875 * 104.64558 * 4 3 2 14 14 O 1.21628 * 120.00074 * 192.05663 * 13 4 3 15 15 C 1.47378 * 119.99835 * 12.05246 * 13 4 3 16 16 C 1.39796 * 120.18281 * 316.61377 * 15 13 4 17 17 C 1.37717 * 119.91250 * 179.97438 * 16 15 13 18 18 C 1.38715 * 120.29393 * 359.97438 * 17 16 15 19 19 Cl 1.73598 * 119.81444 * 180.02562 * 18 17 16 20 20 C 1.38228 * 120.36893 * 359.74235 * 18 17 16 21 21 C 1.38621 * 120.07622 * 0.51564 * 20 18 17 22 22 O 1.35661 * 120.14158 * 179.76604 * 21 20 18 23 23 C 1.42899 * 117.00245 * 359.72263 * 22 21 20 24 24 H 4.40641 * 5.51353 * 180.02562 * 4 1 2 25 25 H 1.09003 * 109.47109 * 47.52805 * 3 2 1 26 26 H 1.08999 * 109.47294 * 287.52958 * 3 2 1 27 27 H 0.96998 * 120.00060 * 180.02562 * 8 7 5 28 28 H 1.08002 * 120.04823 * 359.97438 * 16 15 13 29 29 H 1.08005 * 119.85442 * 180.02562 * 17 16 15 30 30 H 1.07996 * 119.95886 * 180.25605 * 20 18 17 31 31 H 1.08994 * 109.47661 * 179.97438 * 23 22 21 32 32 H 1.09003 * 109.47151 * 59.99560 * 23 22 21 33 33 H 1.08999 * 109.47390 * 300.00213 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1337 1.3496 -0.2984 5 6 3.0790 1.8295 -1.5794 6 1 3.7472 1.4374 -2.3319 7 6 2.1634 2.8214 -1.9116 8 7 2.2496 4.0082 -1.3545 9 14 0.8105 2.4669 -3.1500 10 1 -0.3859 1.9468 -2.4407 11 1 0.4560 3.7179 -3.8673 12 1 1.2863 1.4542 -4.1264 13 6 3.6362 2.1180 0.6883 14 8 3.8365 3.3020 0.4949 15 6 3.9430 1.5236 2.0015 16 6 3.0468 0.6299 2.5951 17 6 3.3393 0.0774 3.8222 18 6 4.5204 0.4032 4.4727 19 17 4.8769 -0.3012 6.0188 20 6 5.4177 1.2810 3.8940 21 6 5.1363 1.8503 2.6618 22 8 6.0138 2.7157 2.0948 23 6 7.2078 3.0012 2.8262 24 1 -1.0501 -0.0004 0.0003 25 1 3.0097 -0.6931 -0.7580 26 1 3.0096 -0.3087 0.9799 27 1 1.6105 4.7001 -1.5860 28 1 2.1262 0.3730 2.0921 29 1 2.6465 -0.6133 4.2798 30 1 6.3372 1.5268 4.4044 31 1 7.8202 3.7045 2.2620 32 1 7.7666 2.0787 2.9840 33 1 6.9477 3.4377 3.7905 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305907448.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:05 Heat of formation + Delta-G solvation = 30.629546 kcal Electronic energy + Delta-G solvation = -21113.078788 eV Core-core repulsion = 17747.149427 eV Total energy + Delta-G solvation = -3365.929361 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.60031 -39.80434 -38.59239 -37.27458 -36.55280 -34.69344 -33.14853 -32.08252 -31.28974 -28.42390 -27.98361 -26.70424 -24.20799 -23.37843 -21.47216 -19.40546 -19.32721 -18.58757 -17.69794 -17.47989 -16.82870 -16.55832 -16.32004 -16.13521 -15.81896 -15.45179 -14.91598 -14.58840 -14.34121 -13.99141 -13.95053 -13.84891 -13.30262 -13.05411 -12.81920 -12.66853 -12.51458 -12.22573 -12.13456 -11.95460 -11.77600 -11.30831 -10.96302 -10.53905 -9.99732 -9.79472 -9.29863 -9.12413 -8.52435 -5.95379 -0.19277 0.24134 0.97939 1.31158 1.43679 1.52211 1.84744 2.00785 2.19845 2.33156 2.37019 2.57503 2.73405 3.28491 3.68201 3.75713 3.96049 4.03775 4.14327 4.29282 4.36819 4.44776 4.50795 4.55855 4.70082 4.82115 4.95412 5.07832 5.19306 5.21684 5.45149 5.50621 6.35708 6.39621 6.82494 7.13542 7.17234 7.58749 8.35178 8.43437 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.020674 B = 0.005491 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.003136 B = 5098.222980 C = 6167.191893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.205 4.205 3 C 0.187 3.813 4 N -0.460 5.460 5 C -0.476 4.476 6 H 0.061 0.939 7 C 0.107 3.893 8 N -0.747 5.747 9 Si 0.883 3.117 10 H -0.261 1.261 11 H -0.287 1.287 12 H -0.261 1.261 13 C 0.503 3.497 14 O -0.540 6.540 15 C -0.174 4.174 16 C -0.059 4.059 17 C -0.143 4.143 18 C 0.016 3.984 19 Cl -0.047 7.047 20 C -0.200 4.200 21 C 0.166 3.834 22 O -0.325 6.325 23 C 0.013 3.987 24 H 0.242 0.758 25 H 0.088 0.912 26 H 0.121 0.879 27 H 0.267 0.733 28 H 0.150 0.850 29 H 0.169 0.831 30 H 0.167 0.833 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.331 -9.613 13.842 17.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.207 4.207 3 C 0.065 3.935 4 N -0.184 5.184 5 C -0.597 4.597 6 H 0.079 0.921 7 C -0.117 4.117 8 N -0.369 5.369 9 Si 0.704 3.296 10 H -0.186 1.186 11 H -0.213 1.213 12 H -0.185 1.185 13 C 0.291 3.709 14 O -0.418 6.418 15 C -0.178 4.178 16 C -0.077 4.077 17 C -0.162 4.162 18 C -0.012 4.012 19 Cl -0.018 7.018 20 C -0.219 4.219 21 C 0.118 3.882 22 O -0.238 6.238 23 C -0.081 4.081 24 H 0.258 0.742 25 H 0.106 0.894 26 H 0.139 0.861 27 H 0.077 0.923 28 H 0.167 0.833 29 H 0.186 0.814 30 H 0.185 0.815 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.511 -8.683 13.753 16.639 hybrid contribution -0.630 0.298 -0.755 1.027 sum 2.882 -8.385 12.998 15.734 Atomic orbital electron populations 1.25527 0.96593 0.99805 1.01143 1.24089 0.95633 1.00711 1.00222 1.19308 0.83829 0.87157 1.03208 1.43107 1.55877 1.13134 1.06277 1.18036 1.26887 1.28934 0.85824 0.92115 1.26297 0.97671 0.91842 0.95908 1.71185 1.27294 1.01200 1.37233 0.86740 0.82567 0.78976 0.81365 1.18562 1.21332 1.18469 1.19288 0.79238 0.87482 0.84849 1.90748 1.53032 1.16119 1.81877 1.20094 0.96437 1.03504 0.97781 1.21463 0.98562 0.93043 0.94682 1.21112 0.97201 1.03315 0.94538 1.20810 0.95381 0.96438 0.88531 1.98370 1.94659 1.82486 1.26291 1.21148 1.03210 1.02251 0.95277 1.18954 0.89068 0.89082 0.91061 1.86308 1.31334 1.58820 1.47296 1.23456 0.84009 1.02692 0.97901 0.74160 0.89362 0.86149 0.92279 0.83274 0.81398 0.81545 0.87209 0.90413 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.33 19.25 74.32 1.43 -5.90 16 2 C -0.21 -8.04 12.13 31.12 0.38 -7.67 16 3 C 0.19 7.56 5.43 84.57 0.46 8.02 16 4 N -0.46 -24.09 2.55 -649.19 -1.65 -25.74 16 5 C -0.48 -27.84 8.36 84.09 0.70 -27.14 16 6 H 0.06 3.70 8.06 -2.91 -0.02 3.67 16 7 C 0.11 6.11 5.33 84.95 0.45 6.57 16 8 N -0.75 -45.55 11.74 21.67 0.25 -45.30 16 9 Si 0.88 41.74 29.69 68.60 2.04 43.78 16 10 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 13 C 0.50 27.10 6.94 86.65 0.60 27.70 16 14 O -0.54 -34.49 14.15 9.18 0.13 -34.36 16 15 C -0.17 -7.25 5.38 -20.01 -0.11 -7.36 16 16 C -0.06 -1.93 7.36 22.52 0.17 -1.77 16 17 C -0.14 -3.60 9.80 22.26 0.22 -3.38 16 18 C 0.02 0.38 6.32 22.38 0.14 0.52 16 19 Cl -0.05 -0.91 28.94 -2.72 -0.08 -0.99 16 20 C -0.20 -5.40 8.80 22.36 0.20 -5.20 16 21 C 0.17 6.12 6.67 22.85 0.15 6.27 16 22 O -0.33 -12.75 9.37 -76.47 -0.72 -13.46 16 23 C 0.01 0.32 9.81 113.37 1.11 1.44 16 24 H 0.24 6.15 7.80 -4.41 -0.03 6.12 16 25 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 26 H 0.12 4.14 3.90 -2.39 -0.01 4.13 16 27 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 28 H 0.15 4.88 4.86 -2.91 -0.01 4.87 16 29 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 30 H 0.17 3.42 6.30 -2.91 -0.02 3.41 16 31 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.08 1.46 7.65 -2.39 -0.02 1.44 16 33 H 0.07 1.45 7.67 -2.39 -0.02 1.43 16 Total: -1.00 -78.03 308.23 7.03 -71.00 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 1.15 Total: 12.98 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: 5.90 Total: -7.90 kcal Atomic # 7 Polarization: -69.64 SS G_CDS: -1.40 Total: -71.04 kcal Atomic # 8 Polarization: -47.24 SS G_CDS: -0.59 Total: -47.83 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.04 Total: 43.78 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -78.03 7.03 -71.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305907448.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.634 kcal (2) G-P(sol) polarization free energy of solvation -78.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds