Wall clock time and date at job start Tue Mar 31 2020 06:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86797 * 119.99947 * 2 1 4 4 H 1.48497 * 109.47047 * 275.27731 * 3 2 1 5 5 H 1.48503 * 109.47608 * 35.27769 * 3 2 1 6 6 H 1.48500 * 109.47298 * 155.27901 * 3 2 1 7 7 C 1.39926 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00207 * 343.37941 * 7 2 1 9 9 C 1.41410 * 120.00033 * 163.37028 * 7 2 1 10 10 C 1.40776 * 120.20837 * 332.16244 * 9 7 2 11 11 C 1.37650 * 119.89574 * 179.97438 * 10 9 7 12 12 C 1.38525 * 120.32278 * 0.28325 * 11 10 9 13 13 C 1.39287 * 120.42092 * 359.44021 * 12 11 10 14 14 N 1.39683 * 119.94917 * 180.28149 * 13 12 11 15 15 S 1.65593 * 120.00210 * 314.98757 * 14 13 12 16 16 O 1.42105 * 106.40184 * 49.09724 * 15 14 13 17 17 O 1.42101 * 106.40742 * 182.01617 * 15 14 13 18 18 C 1.76200 * 107.21701 * 295.55680 * 15 14 13 19 19 N 1.30500 * 125.65378 * 265.50921 * 18 15 14 20 20 C 1.34127 * 109.25990 * 179.89271 * 19 18 15 21 21 C 1.34671 * 108.01797 * 0.37737 * 20 19 18 22 22 N 1.35044 * 125.65040 * 85.82075 * 18 15 14 23 23 H 0.97002 * 126.39647 * 359.97438 * 22 18 15 24 24 C 1.38319 * 120.10193 * 0.55188 * 13 12 11 25 25 H 0.97000 * 119.99572 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.05299 * 359.95589 * 10 9 7 27 27 H 1.08000 * 119.83489 * 179.97438 * 11 10 9 28 28 H 1.07996 * 119.78266 * 179.72252 * 12 11 10 29 29 H 0.97003 * 119.99762 * 134.98489 * 14 13 12 30 30 H 1.07995 * 125.99191 * 180.11300 * 20 19 18 31 31 H 1.07994 * 126.58947 * 179.81945 * 21 20 19 32 32 H 1.07995 * 120.16575 * 179.70159 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3783 2.1108 -1.3941 5 1 1.5001 2.6180 0.8086 6 1 3.5912 1.4106 0.5855 7 6 2.0080 -1.2118 0.0005 8 1 1.5019 -2.1275 0.2685 9 6 3.3777 -1.2376 -0.3499 10 6 3.9035 -0.2676 -1.2242 11 6 5.2380 -0.2984 -1.5606 12 6 6.0659 -1.2834 -1.0476 13 6 5.5610 -2.2463 -0.1770 14 7 6.4061 -3.2315 0.3391 15 16 7.4675 -4.0181 -0.6593 16 8 8.1462 -3.0108 -1.3968 17 8 8.1390 -4.9780 0.1450 18 6 6.5099 -4.9284 -1.8251 19 7 6.1631 -6.1813 -1.7117 20 6 5.4381 -6.5384 -2.7821 21 6 5.3385 -5.4682 -3.5936 22 7 6.0182 -4.4466 -2.9870 23 1 6.1267 -3.5451 -3.3281 24 6 4.2229 -2.2317 0.1729 25 1 -0.4849 0.8401 0.0004 26 1 3.2609 0.4995 -1.6306 27 1 5.6402 0.4460 -2.2317 28 1 7.1106 -1.3020 -1.3209 29 1 6.3712 -3.4549 1.2824 30 1 5.0126 -7.5143 -2.9636 31 1 4.8212 -5.4244 -4.5406 32 1 3.8293 -2.9807 0.8441 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313419427.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:00 Heat of formation + Delta-G solvation = 7.075925 kcal Electronic energy + Delta-G solvation = -21017.749675 eV Core-core repulsion = 17685.135410 eV Total energy + Delta-G solvation = -3332.614265 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.10231 -38.46659 -37.19667 -35.92039 -34.97487 -33.30464 -32.69008 -30.49117 -29.84269 -28.44064 -25.33494 -22.80233 -21.77309 -21.65597 -21.08951 -19.84860 -18.85827 -17.95665 -17.50722 -16.20233 -15.97122 -15.78185 -15.13587 -14.96410 -14.67513 -14.19528 -14.03107 -13.82329 -13.06293 -12.88939 -12.61645 -12.28307 -12.16970 -12.11607 -11.75977 -11.49720 -11.14719 -10.91670 -10.82812 -10.41595 -10.29643 -10.26453 -9.85135 -9.65417 -9.27984 -9.03758 -7.92559 -7.56303 -7.11344 -4.69001 0.24494 1.48787 2.34694 2.41352 2.68369 2.91472 2.99174 3.10611 3.12192 3.21004 3.66141 3.84303 4.26427 4.41934 4.85670 5.10465 5.16141 5.28659 5.58744 5.71532 5.92865 6.20412 6.31612 6.44641 6.49347 6.62371 6.82914 6.95430 7.02262 7.25663 7.44656 7.49584 7.60731 7.66704 7.91400 8.16884 8.43258 8.60914 9.90294 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.022281 B = 0.005306 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.365478 B = 5275.743168 C = 5778.167604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.083 3.917 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.241 1.241 7 C -0.440 4.440 8 H 0.092 0.908 9 C 0.102 3.898 10 C -0.243 4.243 11 C -0.060 4.060 12 C -0.281 4.281 13 C 0.158 3.842 14 N -1.042 6.042 15 S 2.726 3.274 16 O -0.940 6.940 17 O -0.936 6.936 18 C -0.342 4.342 19 N -0.396 5.396 20 C -0.037 4.037 21 C 0.001 3.999 22 N -0.504 5.504 23 H 0.434 0.566 24 C -0.211 4.211 25 H 0.288 0.712 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.132 0.868 29 H 0.425 0.575 30 H 0.182 0.818 31 H 0.190 0.810 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.850 -4.591 -5.453 10.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.137 4.137 3 Si 0.742 3.258 4 H -0.197 1.197 5 H -0.219 1.219 6 H -0.164 1.164 7 C -0.468 4.468 8 H 0.110 0.890 9 C 0.098 3.902 10 C -0.263 4.263 11 C -0.079 4.079 12 C -0.303 4.303 13 C 0.064 3.936 14 N -0.796 5.796 15 S 2.808 3.192 16 O -0.929 6.929 17 O -0.925 6.925 18 C -0.681 4.681 19 N -0.117 5.117 20 C -0.191 4.191 21 C -0.140 4.140 22 N -0.106 5.106 23 H 0.274 0.726 24 C -0.235 4.235 25 H 0.098 0.902 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.150 0.850 29 H 0.262 0.738 30 H 0.199 0.801 31 H 0.207 0.793 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.748 -5.021 -4.882 11.206 hybrid contribution -0.978 1.225 -0.825 1.771 sum 7.770 -3.797 -5.707 10.361 Atomic orbital electron populations 1.69679 1.08153 1.30572 1.34111 1.26216 0.94803 1.01949 0.90777 0.86264 0.81355 0.79393 0.78802 1.19660 1.21870 1.16396 1.19531 0.92475 0.96071 1.38750 0.89023 1.17562 0.92936 0.90483 0.89258 1.21122 0.95659 1.04179 1.05372 1.20488 0.93337 0.96366 0.97742 1.21063 1.00784 0.99569 1.08857 1.17245 0.89319 0.89086 0.97940 1.52971 1.56838 1.48563 1.21274 1.01630 0.72330 0.72493 0.72714 1.93593 1.69541 1.56380 1.73405 1.93612 1.70057 1.62060 1.66765 1.36981 1.22036 1.03720 1.05397 1.70201 1.09680 1.08491 1.23327 1.22719 1.03659 1.00232 0.92491 1.23347 1.00564 0.88687 1.01433 1.43055 1.37716 1.13801 1.16017 0.72583 1.20963 0.90870 1.04485 1.07159 0.90183 0.88024 0.87983 0.85008 0.73810 0.80131 0.79339 0.87467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.29 13.93 55.55 0.77 -19.52 16 2 C 0.08 2.04 5.43 -17.34 -0.09 1.95 16 3 Si 0.92 19.63 24.41 -169.99 -4.15 15.48 16 4 H -0.27 -5.59 6.70 56.52 0.38 -5.21 16 5 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.24 -5.28 6.70 56.52 0.38 -4.90 16 7 C -0.44 -11.16 9.59 -37.74 -0.36 -11.53 16 8 H 0.09 2.45 8.06 -52.49 -0.42 2.02 16 9 C 0.10 2.38 5.17 -106.85 -0.55 1.83 16 10 C -0.24 -5.37 7.06 -38.84 -0.27 -5.64 16 11 C -0.06 -1.18 10.02 -39.69 -0.40 -1.58 16 12 C -0.28 -5.35 9.20 -39.09 -0.36 -5.71 16 13 C 0.16 3.01 6.19 -83.86 -0.52 2.49 16 14 N -1.04 -16.71 5.76 32.37 0.19 -16.53 16 15 S 2.73 43.56 5.84 -107.50 -0.63 42.94 16 16 O -0.94 -15.79 14.95 -57.17 -0.85 -16.65 16 17 O -0.94 -16.66 18.01 -57.17 -1.03 -17.69 16 18 C -0.34 -5.46 8.08 -90.37 -0.73 -6.19 16 19 N -0.40 -6.59 11.24 -13.85 -0.16 -6.74 16 20 C -0.04 -0.49 11.87 -17.81 -0.21 -0.70 16 21 C 0.00 0.01 12.04 -16.56 -0.20 -0.19 16 22 N -0.50 -6.79 6.15 -13.23 -0.08 -6.88 16 23 H 0.43 5.11 8.96 -40.82 -0.37 4.74 16 24 C -0.21 -4.50 9.71 -38.67 -0.38 -4.88 16 25 H 0.29 6.58 8.30 -40.82 -0.34 6.24 16 26 H 0.10 2.24 4.34 -52.49 -0.23 2.01 16 27 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 28 H 0.13 2.39 5.56 -52.49 -0.29 2.10 16 29 H 0.42 5.77 8.95 -34.47 -0.31 5.46 16 30 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.19 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 291.56 15.07 4.39 4.39 Total: -1.00 -31.17 291.56 -8.11 -39.28 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -2.49 Total: 12.07 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: -4.08 Total: -30.16 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.72 Total: -49.67 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.88 Total: -34.33 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.15 Total: 15.48 kcal Atomic # 16 Polarization: 43.56 SS G_CDS: -0.63 Total: 42.94 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.17 -8.11 -39.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313419427.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.354 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds