Wall clock time and date at job start Tue Mar 31 2020 06:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86797 * 119.99947 * 2 1 4 4 H 1.48497 * 109.47047 * 275.27731 * 3 2 1 5 5 H 1.48503 * 109.47608 * 35.27769 * 3 2 1 6 6 H 1.48500 * 109.47298 * 155.27901 * 3 2 1 7 7 C 1.39926 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00207 * 343.37941 * 7 2 1 9 9 C 1.41410 * 120.00033 * 163.37028 * 7 2 1 10 10 C 1.40776 * 120.20837 * 332.16244 * 9 7 2 11 11 C 1.37650 * 119.89574 * 179.97438 * 10 9 7 12 12 C 1.38525 * 120.32278 * 0.28325 * 11 10 9 13 13 C 1.39287 * 120.42092 * 359.44021 * 12 11 10 14 14 N 1.39683 * 119.94917 * 180.28149 * 13 12 11 15 15 S 1.65593 * 120.00210 * 314.98757 * 14 13 12 16 16 O 1.42105 * 106.40184 * 49.09724 * 15 14 13 17 17 O 1.42101 * 106.40742 * 182.01617 * 15 14 13 18 18 C 1.76200 * 107.21701 * 295.55680 * 15 14 13 19 19 N 1.30500 * 125.65378 * 265.50921 * 18 15 14 20 20 C 1.34127 * 109.25990 * 179.89271 * 19 18 15 21 21 C 1.34671 * 108.01797 * 0.37737 * 20 19 18 22 22 N 1.35044 * 125.65040 * 85.82075 * 18 15 14 23 23 H 0.97002 * 126.39647 * 359.97438 * 22 18 15 24 24 C 1.38319 * 120.10193 * 0.55188 * 13 12 11 25 25 H 0.97000 * 119.99572 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.05299 * 359.95589 * 10 9 7 27 27 H 1.08000 * 119.83489 * 179.97438 * 11 10 9 28 28 H 1.07996 * 119.78266 * 179.72252 * 12 11 10 29 29 H 0.97003 * 119.99762 * 134.98489 * 14 13 12 30 30 H 1.07995 * 125.99191 * 180.11300 * 20 19 18 31 31 H 1.07994 * 126.58947 * 179.81945 * 21 20 19 32 32 H 1.07995 * 120.16575 * 179.70159 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3783 2.1108 -1.3941 5 1 1.5001 2.6180 0.8086 6 1 3.5912 1.4106 0.5855 7 6 2.0080 -1.2118 0.0005 8 1 1.5019 -2.1275 0.2685 9 6 3.3777 -1.2376 -0.3499 10 6 3.9035 -0.2676 -1.2242 11 6 5.2380 -0.2984 -1.5606 12 6 6.0659 -1.2834 -1.0476 13 6 5.5610 -2.2463 -0.1770 14 7 6.4061 -3.2315 0.3391 15 16 7.4675 -4.0181 -0.6593 16 8 8.1462 -3.0108 -1.3968 17 8 8.1390 -4.9780 0.1450 18 6 6.5099 -4.9284 -1.8251 19 7 6.1631 -6.1813 -1.7117 20 6 5.4381 -6.5384 -2.7821 21 6 5.3385 -5.4682 -3.5936 22 7 6.0182 -4.4466 -2.9870 23 1 6.1267 -3.5451 -3.3281 24 6 4.2229 -2.2317 0.1729 25 1 -0.4849 0.8401 0.0004 26 1 3.2609 0.4995 -1.6306 27 1 5.6402 0.4460 -2.2317 28 1 7.1106 -1.3020 -1.3209 29 1 6.3712 -3.4549 1.2824 30 1 5.0126 -7.5143 -2.9636 31 1 4.8212 -5.4244 -4.5406 32 1 3.8293 -2.9807 0.8441 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313419427.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:00 Heat of formation + Delta-G solvation = -16.979273 kcal Electronic energy + Delta-G solvation = -21018.792787 eV Core-core repulsion = 17685.135410 eV Total energy + Delta-G solvation = -3333.657377 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.14817 -40.08188 -38.55556 -37.26308 -36.55544 -35.01195 -33.77898 -32.20184 -30.86965 -30.03919 -27.09955 -23.92974 -23.36490 -22.81514 -22.60933 -21.00931 -20.23412 -19.51728 -18.85011 -17.84355 -17.38629 -17.10571 -16.50378 -16.27734 -16.18437 -15.69341 -15.17118 -14.79027 -14.69885 -14.49709 -14.17696 -13.80015 -13.71887 -13.49638 -13.05170 -13.00443 -12.82894 -12.64771 -12.44394 -11.87835 -11.59559 -11.50470 -11.39335 -11.29858 -10.95800 -10.05092 -9.63149 -9.16631 -8.92654 -6.56674 -1.03195 0.40802 0.69318 0.74637 1.28117 1.43567 1.51553 1.57896 1.83610 1.99384 2.11219 2.40562 2.53533 3.21956 3.41001 3.85583 4.12958 4.25727 4.34168 4.36354 4.57415 4.66203 4.73423 4.88758 4.99125 5.25968 5.35182 5.49641 5.67709 5.77540 5.86936 5.96967 6.00722 6.20338 6.35488 6.56878 6.67320 6.77450 8.15192 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.022281 B = 0.005306 C = 0.004845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.365478 B = 5275.743168 C = 5778.167604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.047 3.953 3 Si 0.967 3.033 4 H -0.253 1.253 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.478 4.478 8 H 0.056 0.944 9 C 0.088 3.912 10 C -0.254 4.254 11 C -0.056 4.056 12 C -0.265 4.265 13 C 0.171 3.829 14 N -1.040 6.040 15 S 2.749 3.251 16 O -0.947 6.947 17 O -0.956 6.956 18 C -0.376 4.376 19 N -0.429 5.429 20 C -0.058 4.058 21 C 0.024 3.976 22 N -0.503 5.503 23 H 0.441 0.559 24 C -0.224 4.224 25 H 0.295 0.705 26 H 0.103 0.897 27 H 0.140 0.860 28 H 0.150 0.850 29 H 0.435 0.565 30 H 0.210 0.790 31 H 0.237 0.763 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.657 -3.964 -7.273 12.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.168 4.168 3 Si 0.790 3.210 4 H -0.178 1.178 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.507 4.507 8 H 0.074 0.926 9 C 0.085 3.915 10 C -0.273 4.273 11 C -0.074 4.074 12 C -0.286 4.286 13 C 0.076 3.924 14 N -0.795 5.795 15 S 2.833 3.167 16 O -0.937 6.937 17 O -0.945 6.945 18 C -0.715 4.715 19 N -0.151 5.151 20 C -0.211 4.211 21 C -0.118 4.118 22 N -0.107 5.107 23 H 0.283 0.717 24 C -0.248 4.248 25 H 0.105 0.895 26 H 0.120 0.880 27 H 0.158 0.842 28 H 0.167 0.833 29 H 0.274 0.726 30 H 0.226 0.774 31 H 0.253 0.747 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 10.583 -4.380 -6.670 13.255 hybrid contribution -1.377 0.812 -0.366 1.640 sum 9.206 -3.568 -7.036 12.124 Atomic orbital electron populations 1.69713 1.09283 1.31659 1.36519 1.26871 0.95356 1.04359 0.90208 0.85483 0.79734 0.76140 0.79631 1.17845 1.21060 1.17071 1.19489 0.93877 0.95434 1.41928 0.92624 1.17677 0.92367 0.91711 0.89791 1.21243 0.96904 1.03893 1.05301 1.20874 0.92197 0.96889 0.97479 1.21411 1.01520 0.98444 1.07275 1.17197 0.88695 0.89300 0.97209 1.52942 1.56034 1.48233 1.22267 1.00743 0.71810 0.71894 0.72249 1.93562 1.69933 1.56775 1.73413 1.93585 1.70702 1.62552 1.67657 1.36574 1.24190 1.04006 1.06714 1.70148 1.10749 1.09032 1.25157 1.23394 1.03533 1.02210 0.91980 1.24172 0.98294 0.87211 1.02143 1.43169 1.37461 1.14595 1.15442 0.71729 1.21032 0.91847 1.04299 1.07586 0.89455 0.87959 0.84238 0.83253 0.72613 0.77362 0.74661 0.87782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.38 13.93 21.82 0.30 -44.08 16 2 C 0.05 2.40 5.43 85.25 0.46 2.86 16 3 Si 0.97 40.00 24.41 68.60 1.67 41.68 16 4 H -0.25 -9.69 6.70 99.48 0.67 -9.02 16 5 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 6 H -0.25 -10.35 6.70 99.48 0.67 -9.69 16 7 C -0.48 -25.30 9.59 23.46 0.22 -25.07 16 8 H 0.06 3.21 8.06 -2.91 -0.02 3.18 16 9 C 0.09 4.14 5.17 -21.31 -0.11 4.03 16 10 C -0.25 -10.70 7.06 22.75 0.16 -10.54 16 11 C -0.06 -1.98 10.02 22.20 0.22 -1.76 16 12 C -0.26 -9.21 9.20 22.59 0.21 -9.00 16 13 C 0.17 6.20 6.19 38.16 0.24 6.44 16 14 N -1.04 -31.84 5.76 -51.49 -0.30 -32.14 16 15 S 2.75 83.66 5.84 -56.49 -0.33 83.33 16 16 O -0.95 -29.52 14.95 -128.00 -1.91 -31.43 16 17 O -0.96 -33.20 18.01 -128.00 -2.31 -35.50 16 18 C -0.38 -11.40 8.08 180.26 1.46 -9.94 16 19 N -0.43 -13.71 11.24 -197.74 -2.22 -15.93 16 20 C -0.06 -1.37 11.87 83.52 0.99 -0.38 16 21 C 0.02 0.46 12.04 83.09 1.00 1.46 16 22 N -0.50 -12.23 6.15 -195.76 -1.20 -13.44 16 23 H 0.44 9.04 8.96 -92.71 -0.83 8.21 16 24 C -0.22 -9.52 9.71 22.86 0.22 -9.30 16 25 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 26 H 0.10 4.29 4.34 -2.91 -0.01 4.28 16 27 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 28 H 0.15 4.79 5.56 -2.91 -0.02 4.77 16 29 H 0.43 11.39 8.95 -96.75 -0.87 10.52 16 30 H 0.21 3.45 8.06 -2.91 -0.02 3.42 16 31 H 0.24 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.10 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -68.34 291.56 -1.79 -70.13 By element: Atomic # 1 Polarization: 29.17 SS G_CDS: -0.57 Total: 28.60 kcal Atomic # 6 Polarization: -56.30 SS G_CDS: 5.07 Total: -51.22 kcal Atomic # 7 Polarization: -102.17 SS G_CDS: -3.42 Total: -105.59 kcal Atomic # 8 Polarization: -62.72 SS G_CDS: -4.22 Total: -66.94 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 1.67 Total: 41.68 kcal Atomic # 16 Polarization: 83.66 SS G_CDS: -0.33 Total: 83.33 kcal Total: -68.34 -1.79 -70.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313419427.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.155 kcal (2) G-P(sol) polarization free energy of solvation -68.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds