Wall clock time and date at job start Tue Mar 31 2020 06:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86798 * 119.99634 * 2 1 4 4 H 1.48502 * 109.47411 * 275.41772 * 3 2 1 5 5 H 1.48497 * 109.47325 * 35.41264 * 3 2 1 6 6 H 1.48500 * 109.47592 * 155.41792 * 3 2 1 7 7 C 1.39929 * 120.00649 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99383 * 341.72710 * 7 2 1 9 9 C 1.41404 * 120.00204 * 161.73015 * 7 2 1 10 10 C 1.40780 * 120.20690 * 330.18975 * 9 7 2 11 11 C 1.37647 * 119.89355 * 180.02562 * 10 9 7 12 12 C 1.38524 * 120.32584 * 359.73817 * 11 10 9 13 13 C 1.39295 * 120.41935 * 0.52218 * 12 11 10 14 14 N 1.39685 * 119.95047 * 179.75928 * 13 12 11 15 15 C 1.46502 * 119.99896 * 359.72374 * 14 13 12 16 16 C 1.50706 * 109.47078 * 179.97438 * 15 14 13 17 17 S 1.75876 * 125.20090 * 269.97370 * 16 15 14 18 18 C 1.75883 * 90.98116 * 179.97438 * 17 16 15 19 19 C 1.33406 * 109.60797 * 0.02562 * 18 17 16 20 20 C 1.33443 * 125.19655 * 89.97315 * 16 15 14 21 21 Cl 1.73592 * 122.55225 * 359.97438 * 20 16 15 22 22 C 1.38316 * 120.09927 * 359.48281 * 13 12 11 23 23 H 0.96993 * 120.00518 * 359.97438 * 1 2 3 24 24 H 1.08004 * 120.05767 * 359.97438 * 10 9 7 25 25 H 1.08005 * 119.83880 * 180.02562 * 11 10 9 26 26 H 1.08003 * 119.78964 * 180.27953 * 12 11 10 27 27 H 0.97000 * 120.00131 * 179.72056 * 14 13 12 28 28 H 1.08993 * 109.47289 * 60.00233 * 15 14 13 29 29 H 1.09003 * 109.47139 * 299.99521 * 15 14 13 30 30 H 1.08003 * 125.19751 * 179.72992 * 18 17 16 31 31 H 1.08002 * 122.54414 * 179.97438 * 19 18 17 32 32 H 1.07996 * 120.16392 * 180.23315 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3752 2.1126 -1.3938 5 1 1.5015 2.6170 0.8113 6 1 3.5923 1.4101 0.5824 7 6 2.0081 -1.2117 -0.0005 8 1 1.5089 -2.1237 0.2923 9 6 3.3686 -1.2423 -0.3844 10 6 3.8628 -0.3098 -1.3161 11 6 5.1883 -0.3458 -1.6857 12 6 6.0408 -1.2922 -1.1411 13 6 5.5648 -2.2246 -0.2223 14 7 6.4319 -3.1778 0.3169 15 6 7.8395 -3.2001 -0.0887 16 6 8.5526 -4.3144 0.6331 17 16 9.3561 -4.1628 2.1902 18 6 9.8208 -5.8586 2.1496 19 6 9.3711 -6.4193 1.0257 20 6 8.6709 -5.5670 0.1884 21 17 7.9974 -6.0887 -1.3241 22 6 4.2360 -2.2044 0.1614 23 1 -0.4850 0.8399 0.0004 24 1 3.2029 0.4322 -1.7410 25 1 5.5666 0.3703 -2.4002 26 1 7.0802 -1.3097 -1.4339 27 1 6.1021 -3.8248 0.9599 28 1 8.3055 -2.2477 0.1636 29 1 7.9051 -3.3631 -1.1645 30 1 10.3881 -6.3671 2.9151 31 1 9.5402 -7.4589 0.7870 32 1 3.8667 -2.9244 0.8766 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313433263.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:04 Heat of formation + Delta-G solvation = 30.552685 kcal Electronic energy + Delta-G solvation = -17623.698541 eV Core-core repulsion = 14700.518718 eV Total energy + Delta-G solvation = -2923.179823 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 293.034 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.01108 -39.25051 -37.11955 -36.68429 -35.11665 -32.22812 -32.01728 -29.34735 -27.04096 -26.53527 -24.15379 -22.84489 -22.01956 -20.47565 -19.35884 -18.54775 -17.70275 -17.17883 -16.50239 -16.34196 -16.24285 -15.27395 -15.12943 -14.60239 -14.40040 -14.33812 -14.23665 -13.89313 -13.50601 -13.45547 -13.00412 -12.68206 -12.56177 -12.42731 -12.22448 -12.03831 -11.79947 -11.61893 -11.36794 -11.08227 -10.59105 -9.85712 -9.46524 -9.41952 -8.86059 -8.11084 -6.48744 -0.27009 0.24264 0.79694 0.87278 1.10500 1.30933 1.42220 1.45597 1.54282 1.54821 2.18546 2.68098 2.78275 3.53084 3.62605 4.02376 4.21616 4.37256 4.54072 4.57377 4.65246 4.74061 4.79836 5.00086 5.01256 5.09097 5.15859 5.17949 5.54168 5.75604 5.87446 6.00095 6.09246 6.39731 6.68919 6.81830 6.86865 7.04847 8.23046 Molecular weight = 293.03amu Principal moments of inertia in cm(-1) A = 0.026753 B = 0.003608 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.355894 B = 7758.364843 C = 7987.398565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.049 3.951 3 Si 0.972 3.028 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.254 1.254 7 C -0.490 4.490 8 H 0.051 0.949 9 C 0.108 3.892 10 C -0.292 4.292 11 C -0.046 4.046 12 C -0.290 4.290 13 C 0.246 3.754 14 N -0.744 5.744 15 C 0.206 3.794 16 C -0.216 4.216 17 S 0.170 5.830 18 C -0.185 4.185 19 C -0.147 4.147 20 C -0.038 4.038 21 Cl -0.055 7.055 22 C -0.294 4.294 23 H 0.292 0.708 24 H 0.092 0.908 25 H 0.127 0.873 26 H 0.125 0.875 27 H 0.396 0.604 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.206 0.794 31 H 0.168 0.832 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.344 -8.988 3.332 24.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.165 4.165 3 Si 0.795 3.205 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.178 1.178 7 C -0.520 4.520 8 H 0.069 0.931 9 C 0.105 3.895 10 C -0.313 4.313 11 C -0.065 4.065 12 C -0.313 4.313 13 C 0.144 3.856 14 N -0.375 5.375 15 C 0.080 3.920 16 C -0.335 4.335 17 S 0.434 5.566 18 C -0.321 4.321 19 C -0.176 4.176 20 C -0.080 4.080 21 Cl -0.027 7.027 22 C -0.318 4.318 23 H 0.103 0.897 24 H 0.110 0.890 25 H 0.145 0.855 26 H 0.143 0.857 27 H 0.230 0.770 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.223 0.777 31 H 0.185 0.815 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 22.435 -7.741 4.164 24.095 hybrid contribution -0.987 -1.047 -0.915 1.706 sum 21.447 -8.789 3.249 23.405 Atomic orbital electron populations 1.69734 1.09224 1.31332 1.37908 1.26816 0.95274 1.04266 0.90129 0.85402 0.79486 0.76260 0.79311 1.18447 1.20685 1.17752 1.19453 0.94770 0.95448 1.42362 0.93120 1.17573 0.91972 0.90995 0.88967 1.20968 0.97085 1.06327 1.06878 1.20758 0.92421 0.96565 0.96768 1.20335 0.99981 1.02806 1.08145 1.17543 0.88632 0.88204 0.91173 1.44501 1.07256 1.35783 1.50001 1.19511 0.80453 0.94417 0.97584 1.24420 1.09121 0.97984 1.01941 1.84541 1.49307 1.08890 1.13905 1.26052 1.06279 0.97175 1.02576 1.20108 1.01116 1.02260 0.94161 1.20128 1.02773 0.93568 0.91508 1.98387 1.83986 1.90420 1.29884 1.20487 0.92670 1.08203 1.10476 0.89733 0.89006 0.85518 0.85736 0.76978 0.90885 0.90888 0.77670 0.81490 0.88993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.76 13.93 21.82 0.30 -48.46 16 2 C 0.05 2.74 5.40 85.25 0.46 3.20 16 3 Si 0.97 44.84 24.52 68.60 1.68 46.52 16 4 H -0.26 -11.30 6.71 99.48 0.67 -10.63 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.25 -11.97 6.86 99.48 0.68 -11.29 16 7 C -0.49 -28.91 9.57 23.46 0.22 -28.69 16 8 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 9 C 0.11 5.79 5.10 -21.31 -0.11 5.68 16 10 C -0.29 -14.37 7.17 22.75 0.16 -14.21 16 11 C -0.05 -1.94 10.02 22.20 0.22 -1.72 16 12 C -0.29 -11.32 9.32 22.59 0.21 -11.10 16 13 C 0.25 10.04 6.64 38.16 0.25 10.29 16 14 N -0.74 -23.86 5.72 -343.29 -1.96 -25.83 16 15 C 0.21 5.30 5.09 85.63 0.44 5.73 16 16 C -0.22 -4.67 5.88 24.60 0.14 -4.53 16 17 S 0.17 2.81 23.33 -56.49 -1.32 1.49 16 18 C -0.18 -2.30 11.23 66.73 0.75 -1.55 16 19 C -0.15 -2.28 10.07 21.23 0.21 -2.07 16 20 C -0.04 -0.80 6.27 21.24 0.13 -0.67 16 21 Cl -0.06 -1.28 28.17 -2.72 -0.08 -1.36 16 22 C -0.29 -14.22 9.63 22.86 0.22 -14.00 16 23 H 0.29 14.95 8.30 -92.71 -0.77 14.18 16 24 H 0.09 4.54 4.73 -2.91 -0.01 4.52 16 25 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 26 H 0.12 4.05 6.70 -2.91 -0.02 4.03 16 27 H 0.40 12.26 8.47 -92.71 -0.79 11.47 16 28 H 0.07 1.79 7.93 -2.39 -0.02 1.78 16 29 H 0.07 1.94 7.32 -2.39 -0.02 1.93 16 30 H 0.21 1.13 8.06 -2.91 -0.02 1.11 16 31 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 32 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -63.94 301.46 2.26 -61.67 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.32 Total: 19.59 kcal Atomic # 6 Polarization: -56.96 SS G_CDS: 3.32 Total: -53.63 kcal Atomic # 7 Polarization: -72.62 SS G_CDS: -1.66 Total: -74.28 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.68 Total: 46.52 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -1.32 Total: 1.49 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -63.94 2.26 -61.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313433263.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.227 kcal (2) G-P(sol) polarization free energy of solvation -63.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds