Wall clock time and date at job start Tue Mar 31 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86793 * 120.00492 * 2 1 4 4 H 1.48502 * 109.47528 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47113 * 299.99434 * 3 2 1 6 6 H 1.48500 * 109.47224 * 59.99308 * 3 2 1 7 7 C 1.39934 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00182 * 197.88951 * 7 2 1 9 9 C 1.41415 * 119.99549 * 17.88998 * 7 2 1 10 10 C 1.40786 * 120.20434 * 204.41134 * 9 7 2 11 11 C 1.37643 * 119.89397 * 180.02562 * 10 9 7 12 12 C 1.38527 * 120.32291 * 359.74750 * 11 10 9 13 13 C 1.39289 * 120.42190 * 0.51419 * 12 11 10 14 14 N 1.39688 * 119.94951 * 179.76089 * 13 12 11 15 15 C 1.46499 * 120.00161 * 359.72225 * 14 13 12 16 16 C 1.50704 * 109.47142 * 179.97438 * 15 14 13 17 17 C 1.33350 * 125.18310 * 90.00208 * 16 15 14 18 18 C 1.38479 * 114.92547 * 179.97438 * 17 16 15 19 19 C 1.33493 * 114.88411 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 125.20874 * 179.97438 * 19 18 17 21 21 S 1.75875 * 125.19072 * 270.00114 * 16 15 14 22 22 C 1.38314 * 120.10091 * 359.48293 * 13 12 11 23 23 H 0.97002 * 119.99798 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.05200 * 0.02562 * 10 9 7 25 25 H 1.07994 * 119.84098 * 180.02562 * 11 10 9 26 26 H 1.08003 * 119.78908 * 180.27195 * 12 11 10 27 27 H 0.97003 * 120.00081 * 179.72166 * 14 13 12 28 28 H 1.08999 * 109.47246 * 60.00283 * 15 14 13 29 29 H 1.09002 * 109.47359 * 299.99982 * 15 14 13 30 30 H 1.07992 * 122.53936 * 0.02562 * 17 16 15 31 31 H 1.07998 * 122.55508 * 179.73070 * 18 17 16 32 32 H 1.08001 * 120.16649 * 180.23066 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.7024 1.3462 0.0006 5 1 1.8838 2.3963 -1.2126 6 1 1.8836 2.3964 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0487 -1.2344 0.2878 9 6 1.3520 -2.4071 -0.3752 10 6 1.8260 -3.6501 0.0857 11 6 1.1830 -4.8094 -0.2844 12 6 0.0677 -4.7594 -1.1045 13 6 -0.4094 -3.5373 -1.5725 14 7 -1.5319 -3.4988 -2.4030 15 6 -2.2029 -4.7435 -2.7861 16 6 -3.3760 -4.4279 -3.6779 17 6 -3.3297 -4.3450 -5.0080 18 6 -4.5364 -4.0426 -5.6163 19 6 -5.5626 -3.8795 -4.7782 20 17 -7.1886 -3.4955 -5.2497 21 16 -5.0150 -4.1129 -3.1231 22 6 0.2232 -2.3615 -1.2115 23 1 -0.4850 0.8401 -0.0004 24 1 2.6927 -3.6938 0.7285 25 1 1.5470 -5.7624 0.0699 26 1 -0.4328 -5.6741 -1.3860 27 1 -1.8672 -2.6478 -2.7261 28 1 -2.5549 -5.2568 -1.8913 29 1 -1.5018 -5.3845 -3.3206 30 1 -2.4201 -4.5026 -5.5685 31 1 -4.6383 -3.9415 -6.6867 32 1 -0.1481 -1.4131 -1.5707 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313434897.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:06 Heat of formation + Delta-G solvation = 45.433888 kcal Electronic energy + Delta-G solvation = -17418.556253 eV Core-core repulsion = 14496.021727 eV Total energy + Delta-G solvation = -2922.534526 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 293.034 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.47538 -37.68605 -36.81761 -34.92873 -33.30329 -30.64182 -29.44142 -27.63320 -25.35208 -25.06437 -23.05883 -21.02448 -19.94697 -19.54291 -17.71325 -17.23698 -16.04826 -15.60507 -14.91875 -14.73730 -14.35723 -14.12108 -13.72245 -13.39550 -13.07097 -12.70909 -12.60084 -12.34867 -12.06260 -11.67153 -11.53516 -11.32718 -11.07409 -10.99014 -10.83438 -10.60089 -10.40586 -9.67675 -9.47658 -9.27039 -8.81236 -8.75703 -8.67525 -7.32194 -6.73562 -6.21792 -4.31508 0.60833 0.94162 1.69038 2.05154 2.42525 2.85368 3.10664 3.16133 3.21486 3.32204 3.98031 4.36169 4.68344 4.71761 5.08913 5.20188 5.54077 5.74060 5.80644 5.84230 5.97913 6.21820 6.25413 6.55193 6.85645 7.07233 7.13520 7.35991 7.41529 7.77069 7.94266 8.08346 8.16674 8.47414 8.64047 8.82022 9.00713 9.10058 10.25296 Molecular weight = 293.03amu Principal moments of inertia in cm(-1) A = 0.019488 B = 0.003478 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.446804 B = 8047.777498 C = 9084.549022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.078 3.922 3 Si 0.903 3.097 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.139 3.861 10 C -0.256 4.256 11 C -0.066 4.066 12 C -0.301 4.301 13 C 0.215 3.785 14 N -0.757 5.757 15 C 0.207 3.793 16 C -0.176 4.176 17 C -0.121 4.121 18 C -0.118 4.118 19 C -0.156 4.156 20 Cl -0.021 7.021 21 S 0.168 5.832 22 C -0.229 4.229 23 H 0.277 0.723 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.392 0.608 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.905 -5.872 -9.586 15.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.135 3.865 10 C -0.276 4.276 11 C -0.084 4.084 12 C -0.324 4.324 13 C 0.117 3.883 14 N -0.392 5.392 15 C 0.080 3.920 16 C -0.294 4.294 17 C -0.152 4.152 18 C -0.150 4.150 19 C -0.300 4.300 20 Cl 0.008 6.992 21 S 0.431 5.569 22 C -0.253 4.253 23 H 0.088 0.912 24 H 0.107 0.893 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.226 0.774 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.168 0.832 31 H 0.165 0.835 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.008 -5.827 -8.190 15.660 hybrid contribution 0.581 1.103 -1.554 1.993 sum -11.427 -4.724 -9.745 15.744 Atomic orbital electron populations 1.69871 1.07519 1.28740 1.35561 1.25879 0.94665 1.01124 0.92300 0.86346 0.81110 0.81292 0.78444 1.18437 1.19833 1.20107 1.19590 0.98118 0.91277 1.40376 0.90512 1.17328 0.90051 0.91874 0.87205 1.20878 1.04844 0.92916 1.08986 1.20282 0.95069 0.96292 0.96803 1.19866 1.04599 0.94273 1.13621 1.17618 0.86143 0.94457 0.90117 1.44422 1.32065 1.05827 1.56903 1.19467 0.88449 0.88962 0.95157 1.24835 0.98308 1.08403 0.97874 1.20045 0.98773 1.02986 0.93347 1.20183 0.91065 1.02517 1.01280 1.25326 0.91230 1.14599 0.98825 1.98359 1.16906 1.92702 1.91242 1.84619 1.01459 1.68047 1.02805 1.20718 1.02563 0.95008 1.06983 0.91208 0.89344 0.89573 0.89660 0.77432 0.92029 0.90954 0.83236 0.83486 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.56 10.96 55.55 0.61 -19.95 16 2 C 0.08 1.97 5.14 -17.34 -0.09 1.88 16 3 Si 0.90 18.81 29.59 -169.99 -5.03 13.78 16 4 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 5 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.46 -12.44 9.05 -37.74 -0.34 -12.78 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 9 C 0.14 3.73 5.57 -106.85 -0.60 3.14 16 10 C -0.26 -6.40 9.79 -38.84 -0.38 -6.78 16 11 C -0.07 -1.49 10.02 -39.69 -0.40 -1.89 16 12 C -0.30 -6.66 9.32 -39.08 -0.36 -7.02 16 13 C 0.21 4.89 6.64 -83.86 -0.56 4.33 16 14 N -0.76 -14.01 5.72 -59.86 -0.34 -14.35 16 15 C 0.21 3.06 5.39 -5.19 -0.03 3.03 16 16 C -0.18 -2.24 5.88 -36.01 -0.21 -2.45 16 17 C -0.12 -1.37 10.05 -41.20 -0.41 -1.78 16 18 C -0.12 -1.25 10.13 -41.15 -0.42 -1.67 16 19 C -0.16 -1.77 7.10 29.07 0.21 -1.56 16 20 Cl -0.02 -0.21 29.29 -51.86 -1.52 -1.73 16 21 S 0.17 2.03 23.33 -107.50 -2.51 -0.48 16 22 C -0.23 -5.91 8.53 -38.68 -0.33 -6.24 16 23 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 24 H 0.09 2.10 8.06 -52.49 -0.42 1.67 16 25 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 26 H 0.09 1.67 6.70 -52.48 -0.35 1.32 16 27 H 0.39 7.12 8.47 -40.82 -0.35 6.78 16 28 H 0.06 0.93 7.93 -51.93 -0.41 0.51 16 29 H 0.07 1.03 7.95 -51.93 -0.41 0.62 16 30 H 0.15 1.50 8.06 -52.49 -0.42 1.07 16 31 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.12 3.13 6.16 -52.49 -0.32 2.80 16 LS Contribution 308.46 15.07 4.65 4.65 Total: -1.00 -27.46 308.46 -11.15 -38.61 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -3.09 Total: 9.27 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: -3.92 Total: -29.79 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.27 Total: -34.31 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.51 Total: -0.48 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.52 Total: -1.73 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.46 -11.15 -38.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313434897.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.041 kcal (2) G-P(sol) polarization free energy of solvation -27.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds