Wall clock time and date at job start Tue Mar 31 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86793 * 120.00492 * 2 1 4 4 H 1.48502 * 109.47528 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47113 * 299.99434 * 3 2 1 6 6 H 1.48500 * 109.47224 * 59.99308 * 3 2 1 7 7 C 1.39934 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00182 * 197.88951 * 7 2 1 9 9 C 1.41415 * 119.99549 * 17.88998 * 7 2 1 10 10 C 1.40786 * 120.20434 * 204.41134 * 9 7 2 11 11 C 1.37643 * 119.89397 * 180.02562 * 10 9 7 12 12 C 1.38527 * 120.32291 * 359.74750 * 11 10 9 13 13 C 1.39289 * 120.42190 * 0.51419 * 12 11 10 14 14 N 1.39688 * 119.94951 * 179.76089 * 13 12 11 15 15 C 1.46499 * 120.00161 * 359.72225 * 14 13 12 16 16 C 1.50704 * 109.47142 * 179.97438 * 15 14 13 17 17 C 1.33350 * 125.18310 * 90.00208 * 16 15 14 18 18 C 1.38479 * 114.92547 * 179.97438 * 17 16 15 19 19 C 1.33493 * 114.88411 * 0.02562 * 18 17 16 20 20 Cl 1.73599 * 125.20874 * 179.97438 * 19 18 17 21 21 S 1.75875 * 125.19072 * 270.00114 * 16 15 14 22 22 C 1.38314 * 120.10091 * 359.48293 * 13 12 11 23 23 H 0.97002 * 119.99798 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.05200 * 0.02562 * 10 9 7 25 25 H 1.07994 * 119.84098 * 180.02562 * 11 10 9 26 26 H 1.08003 * 119.78908 * 180.27195 * 12 11 10 27 27 H 0.97003 * 120.00081 * 179.72166 * 14 13 12 28 28 H 1.08999 * 109.47246 * 60.00283 * 15 14 13 29 29 H 1.09002 * 109.47359 * 299.99982 * 15 14 13 30 30 H 1.07992 * 122.53936 * 0.02562 * 17 16 15 31 31 H 1.07998 * 122.55508 * 179.73070 * 18 17 16 32 32 H 1.08001 * 120.16649 * 180.23066 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.7024 1.3462 0.0006 5 1 1.8838 2.3963 -1.2126 6 1 1.8836 2.3964 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0487 -1.2344 0.2878 9 6 1.3520 -2.4071 -0.3752 10 6 1.8260 -3.6501 0.0857 11 6 1.1830 -4.8094 -0.2844 12 6 0.0677 -4.7594 -1.1045 13 6 -0.4094 -3.5373 -1.5725 14 7 -1.5319 -3.4988 -2.4030 15 6 -2.2029 -4.7435 -2.7861 16 6 -3.3760 -4.4279 -3.6779 17 6 -3.3297 -4.3450 -5.0080 18 6 -4.5364 -4.0426 -5.6163 19 6 -5.5626 -3.8795 -4.7782 20 17 -7.1886 -3.4955 -5.2497 21 16 -5.0150 -4.1129 -3.1231 22 6 0.2232 -2.3615 -1.2115 23 1 -0.4850 0.8401 -0.0004 24 1 2.6927 -3.6938 0.7285 25 1 1.5470 -5.7624 0.0699 26 1 -0.4328 -5.6741 -1.3860 27 1 -1.8672 -2.6478 -2.7261 28 1 -2.5549 -5.2568 -1.8913 29 1 -1.5018 -5.3845 -3.3206 30 1 -2.4201 -4.5026 -5.5685 31 1 -4.6383 -3.9415 -6.6867 32 1 -0.1481 -1.4131 -1.5707 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313434897.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:06 Heat of formation + Delta-G solvation = 32.228022 kcal Electronic energy + Delta-G solvation = -17419.128902 eV Core-core repulsion = 14496.021727 eV Total energy + Delta-G solvation = -2923.107175 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 293.034 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.79294 -39.03907 -37.74027 -36.47608 -35.09740 -31.95594 -31.32546 -29.07117 -27.13463 -26.39196 -24.13626 -22.81211 -21.71124 -20.47732 -19.08897 -18.78406 -17.47376 -16.85029 -16.51991 -16.34499 -15.99213 -15.24810 -14.84892 -14.63647 -14.38725 -14.28167 -14.05976 -13.71247 -13.53776 -13.12985 -12.87047 -12.72421 -12.57813 -12.43386 -12.15443 -12.04177 -11.72020 -11.53558 -11.30589 -11.07638 -10.51939 -9.69616 -9.60384 -9.23501 -8.61312 -7.93126 -6.30606 -0.31958 0.03647 0.77704 1.08959 1.16825 1.34472 1.39567 1.53505 1.54005 1.58286 2.23975 2.81648 2.93299 3.61481 3.87481 4.17499 4.30747 4.52703 4.58700 4.62028 4.80848 4.88800 5.00550 5.06816 5.21556 5.29788 5.32002 5.45053 5.59692 5.95495 6.11793 6.22929 6.25855 6.58736 6.94143 7.00676 7.07311 7.23349 8.39168 Molecular weight = 293.03amu Principal moments of inertia in cm(-1) A = 0.019488 B = 0.003478 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.446804 B = 8047.777498 C = 9084.549022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.038 3.962 3 Si 0.978 3.022 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.267 1.267 7 C -0.503 4.503 8 H 0.071 0.929 9 C 0.108 3.892 10 C -0.284 4.284 11 C -0.062 4.062 12 C -0.300 4.300 13 C 0.221 3.779 14 N -0.751 5.751 15 C 0.208 3.792 16 C -0.193 4.193 17 C -0.108 4.108 18 C -0.116 4.116 19 C -0.158 4.158 20 Cl -0.011 7.011 21 S 0.149 5.851 22 C -0.257 4.257 23 H 0.284 0.716 24 H 0.089 0.911 25 H 0.120 0.880 26 H 0.117 0.883 27 H 0.392 0.608 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.166 0.834 31 H 0.172 0.828 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.587 -6.438 -10.937 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.177 4.177 3 Si 0.799 3.201 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.533 4.533 8 H 0.089 0.911 9 C 0.105 3.895 10 C -0.305 4.305 11 C -0.081 4.081 12 C -0.323 4.323 13 C 0.120 3.880 14 N -0.384 5.384 15 C 0.082 3.918 16 C -0.311 4.311 17 C -0.140 4.140 18 C -0.148 4.148 19 C -0.302 4.302 20 Cl 0.017 6.983 21 S 0.413 5.587 22 C -0.281 4.281 23 H 0.095 0.905 24 H 0.108 0.892 25 H 0.138 0.862 26 H 0.135 0.865 27 H 0.226 0.774 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.183 0.817 31 H 0.189 0.811 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.724 -6.420 -9.556 17.159 hybrid contribution 0.657 1.152 -1.216 1.799 sum -12.067 -5.268 -10.772 17.011 Atomic orbital electron populations 1.69926 1.08883 1.30015 1.36004 1.26688 0.95446 1.04235 0.91309 0.85234 0.79494 0.76555 0.78847 1.18303 1.18956 1.19153 1.19824 0.98225 0.92713 1.42531 0.91080 1.17714 0.90987 0.92849 0.87971 1.21041 1.05804 0.93391 1.10237 1.20662 0.94631 0.96903 0.95904 1.20239 1.04264 0.95107 1.12677 1.17708 0.86688 0.93846 0.89759 1.44526 1.30824 1.07479 1.55601 1.19540 0.89211 0.87265 0.95747 1.24592 0.97771 1.10605 0.98130 1.20295 0.99642 1.01146 0.92875 1.20438 0.90365 1.01581 1.02434 1.25442 0.91958 1.14433 0.98343 1.98366 1.16269 1.92603 1.91035 1.84668 1.01606 1.68520 1.03928 1.20643 1.03548 0.95462 1.08479 0.90512 0.89249 0.86244 0.86514 0.77448 0.92031 0.89714 0.81668 0.81102 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.90 10.96 21.82 0.24 -43.66 16 2 C 0.04 1.96 5.14 85.25 0.44 2.40 16 3 Si 0.98 39.19 29.59 68.60 2.03 41.22 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 6 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 7 C -0.50 -28.07 9.05 23.46 0.21 -27.85 16 8 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 9 C 0.11 6.01 5.57 -21.31 -0.12 5.89 16 10 C -0.28 -14.46 9.79 22.75 0.22 -14.23 16 11 C -0.06 -2.76 10.02 22.20 0.22 -2.54 16 12 C -0.30 -12.77 9.32 22.59 0.21 -12.56 16 13 C 0.22 9.98 6.64 38.16 0.25 10.23 16 14 N -0.75 -27.13 5.72 -343.30 -1.96 -29.10 16 15 C 0.21 5.75 5.39 85.63 0.46 6.21 16 16 C -0.19 -4.55 5.88 24.58 0.14 -4.40 16 17 C -0.11 -2.17 10.05 21.22 0.21 -1.95 16 18 C -0.12 -2.14 10.13 21.25 0.22 -1.92 16 19 C -0.16 -3.26 7.10 66.74 0.47 -2.79 16 20 Cl -0.01 -0.21 29.29 -2.72 -0.08 -0.29 16 21 S 0.15 3.44 23.33 -56.49 -1.32 2.12 16 22 C -0.26 -13.64 8.53 22.86 0.20 -13.45 16 23 H 0.28 13.72 8.30 -92.71 -0.77 12.95 16 24 H 0.09 4.36 8.06 -2.91 -0.02 4.34 16 25 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 26 H 0.12 4.19 6.70 -2.91 -0.02 4.17 16 27 H 0.39 14.14 8.47 -92.71 -0.79 13.35 16 28 H 0.06 1.73 7.93 -2.39 -0.02 1.71 16 29 H 0.09 2.17 7.95 -2.39 -0.02 2.15 16 30 H 0.17 2.77 8.06 -2.91 -0.02 2.74 16 31 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.10 5.49 6.16 -2.91 -0.02 5.47 16 Total: -1.00 -60.20 308.46 2.43 -57.78 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.37 Total: 28.90 kcal Atomic # 6 Polarization: -60.12 SS G_CDS: 3.14 Total: -56.98 kcal Atomic # 7 Polarization: -71.03 SS G_CDS: -1.73 Total: -72.76 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Atomic # 16 Polarization: 3.44 SS G_CDS: -1.32 Total: 2.12 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -0.08 Total: -0.29 kcal Total: -60.20 2.43 -57.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313434897.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.007 kcal (2) G-P(sol) polarization free energy of solvation -60.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds