Wall clock time and date at job start Tue Mar 31 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30841 * 1 3 3 Si 1.86792 * 120.00179 * 2 1 4 4 H 1.48499 * 109.47361 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47355 * 300.00260 * 3 2 1 6 6 H 1.48509 * 109.47154 * 60.00244 * 3 2 1 7 7 C 1.39926 * 119.99482 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99593 * 197.88687 * 7 2 1 9 9 C 1.41409 * 120.00595 * 17.88514 * 7 2 1 10 10 C 1.40777 * 120.21074 * 204.41307 * 9 7 2 11 11 C 1.37650 * 119.89796 * 180.02562 * 10 9 7 12 12 C 1.38523 * 120.32032 * 359.74373 * 11 10 9 13 13 C 1.39295 * 120.42373 * 0.51429 * 12 11 10 14 14 N 1.39689 * 119.95124 * 179.76248 * 13 12 11 15 15 C 1.46496 * 119.99842 * 359.72127 * 14 13 12 16 16 C 1.50705 * 109.47047 * 180.02562 * 15 14 13 17 17 C 1.33401 * 125.19552 * 90.00116 * 16 15 14 18 18 C 1.38470 * 114.91089 * 180.02562 * 17 16 15 19 19 Cl 1.73605 * 122.54732 * 179.97438 * 18 17 16 20 20 C 1.33437 * 114.90454 * 0.02562 * 18 17 16 21 21 S 1.75881 * 125.19425 * 269.70108 * 16 15 14 22 22 C 1.38314 * 120.09781 * 359.48819 * 13 12 11 23 23 H 0.97003 * 119.99457 * 359.97438 * 1 2 3 24 24 H 1.08009 * 120.05273 * 0.02562 * 10 9 7 25 25 H 1.07999 * 119.84270 * 180.02562 * 11 10 9 26 26 H 1.08003 * 119.78703 * 180.28070 * 12 11 10 27 27 H 0.96999 * 119.99640 * 179.73115 * 14 13 12 28 28 H 1.09007 * 109.46835 * 60.00378 * 15 14 13 29 29 H 1.08992 * 109.47553 * 300.00293 * 15 14 13 30 30 H 1.08002 * 122.54627 * 0.02645 * 17 16 15 31 31 H 1.08001 * 125.20475 * 179.97438 * 20 18 17 32 32 H 1.08003 * 120.16603 * 180.22620 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.7024 1.3463 -0.0006 5 1 1.8837 2.3964 -1.2124 6 1 1.8837 2.3964 1.2126 7 6 2.0079 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2868 9 6 1.3522 -2.4067 -0.3772 10 6 1.8261 -3.6501 0.0826 11 6 1.1831 -4.8092 -0.2885 12 6 0.0678 -4.7586 -1.1084 13 6 -0.4094 -3.5360 -1.5753 14 7 -1.5321 -3.4968 -2.4057 15 6 -2.2029 -4.7412 -2.7898 16 6 -3.3754 -4.4251 -3.6822 17 6 -3.3284 -4.3415 -5.0128 18 6 -4.5346 -4.0375 -5.6211 19 17 -4.6992 -3.8799 -7.3421 20 6 -5.5607 -3.8738 -4.7838 21 16 -5.0163 -4.1173 -3.1290 22 6 0.2232 -2.3605 -1.2134 23 1 -0.4849 0.8401 0.0004 24 1 2.6929 -3.6944 0.7254 25 1 1.5472 -5.7626 0.0651 26 1 -0.4328 -5.6731 -1.3905 27 1 -1.8673 -2.6456 -2.7281 28 1 -2.5548 -5.2553 -1.8953 29 1 -1.5019 -5.3817 -3.3248 30 1 -2.4186 -4.4989 -5.5731 31 1 -6.5718 -3.6338 -5.0776 32 1 -0.1481 -1.4118 -1.5719 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313454665.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:08 Heat of formation + Delta-G solvation = 30.901422 kcal Electronic energy + Delta-G solvation = -17464.720668 eV Core-core repulsion = 14541.555967 eV Total energy + Delta-G solvation = -2923.164701 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 293.034 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.82871 -39.17436 -37.36021 -36.37772 -35.09093 -32.02318 -31.32848 -29.22533 -27.14198 -26.58511 -24.07404 -22.80215 -21.71310 -20.42265 -19.09184 -18.72978 -17.47610 -16.94296 -16.52741 -16.34497 -15.99392 -15.29231 -14.87012 -14.62223 -14.35694 -14.14372 -14.07456 -13.76223 -13.39121 -13.26754 -12.81884 -12.71731 -12.46524 -12.39957 -12.15721 -12.06541 -11.78434 -11.54032 -11.31100 -11.07733 -10.52330 -9.89858 -9.43794 -9.23802 -8.61613 -7.93741 -6.30902 -0.27477 0.26881 0.65127 1.08685 1.33917 1.36120 1.39404 1.53659 1.55969 1.58078 2.23801 2.81427 2.92265 3.57269 3.87186 4.01444 4.23764 4.36411 4.52283 4.59649 4.80110 4.84920 4.97781 5.00159 5.10066 5.21346 5.30452 5.44605 5.59242 5.95058 6.11360 6.22544 6.25416 6.58376 6.93745 7.00010 7.06959 7.22879 8.38964 Molecular weight = 293.03amu Principal moments of inertia in cm(-1) A = 0.018056 B = 0.003555 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.382246 B = 7873.242853 C = 8628.329532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.038 3.962 3 Si 0.977 3.023 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.504 4.504 8 H 0.071 0.929 9 C 0.109 3.891 10 C -0.284 4.284 11 C -0.062 4.062 12 C -0.300 4.300 13 C 0.221 3.779 14 N -0.751 5.751 15 C 0.209 3.791 16 C -0.194 4.194 17 C -0.117 4.117 18 C -0.061 4.061 19 Cl -0.051 7.051 20 C -0.202 4.202 21 S 0.175 5.825 22 C -0.258 4.258 23 H 0.285 0.715 24 H 0.089 0.911 25 H 0.120 0.880 26 H 0.117 0.883 27 H 0.392 0.608 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.153 0.847 31 H 0.198 0.802 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.191 -6.349 -10.135 17.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.176 4.176 3 Si 0.798 3.202 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.191 1.191 7 C -0.534 4.534 8 H 0.089 0.911 9 C 0.106 3.894 10 C -0.305 4.305 11 C -0.081 4.081 12 C -0.323 4.323 13 C 0.120 3.880 14 N -0.384 5.384 15 C 0.083 3.917 16 C -0.312 4.312 17 C -0.149 4.149 18 C -0.100 4.100 19 Cl -0.022 7.022 20 C -0.339 4.339 21 S 0.438 5.562 22 C -0.282 4.282 23 H 0.095 0.905 24 H 0.108 0.892 25 H 0.138 0.862 26 H 0.135 0.865 27 H 0.226 0.774 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.171 0.829 31 H 0.215 0.785 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.183 -6.366 -8.868 17.116 hybrid contribution 0.941 1.115 -1.480 2.078 sum -12.242 -5.251 -10.348 16.868 Atomic orbital electron populations 1.69930 1.08860 1.30018 1.35966 1.26681 0.95455 1.04204 0.91299 0.85239 0.79493 0.76571 0.78863 1.18337 1.19000 1.19058 1.19831 0.98236 0.92757 1.42545 0.91090 1.17702 0.90955 0.92838 0.87941 1.21044 1.05802 0.93384 1.10247 1.20662 0.94608 0.96910 0.95886 1.20241 1.04290 0.95087 1.12696 1.17710 0.86691 0.93860 0.89750 1.44515 1.30869 1.07446 1.55596 1.19520 0.89228 0.87255 0.95686 1.24395 0.99273 1.10408 0.97136 1.20026 0.98737 1.02665 0.93453 1.19793 0.94643 1.08976 0.86595 1.98364 1.97908 1.96536 1.09441 1.25956 1.04193 1.08159 0.95639 1.84554 1.00056 1.66714 1.04827 1.20649 1.03566 0.95466 1.08496 0.90491 0.89235 0.86235 0.86530 0.77448 0.91530 0.90297 0.82905 0.78517 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.78 10.96 21.82 0.24 -43.54 16 2 C 0.04 1.99 5.14 85.25 0.44 2.42 16 3 Si 0.98 39.23 29.59 68.60 2.03 41.26 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 7 C -0.50 -28.16 9.05 23.46 0.21 -27.95 16 8 H 0.07 3.87 7.91 -2.91 -0.02 3.84 16 9 C 0.11 6.07 5.57 -21.31 -0.12 5.95 16 10 C -0.28 -14.49 9.79 22.75 0.22 -14.26 16 11 C -0.06 -2.75 10.02 22.20 0.22 -2.53 16 12 C -0.30 -12.84 9.32 22.59 0.21 -12.63 16 13 C 0.22 10.02 6.64 38.16 0.25 10.27 16 14 N -0.75 -27.31 5.72 -343.30 -1.96 -29.28 16 15 C 0.21 5.83 5.39 85.64 0.46 6.29 16 16 C -0.19 -4.62 5.88 24.59 0.14 -4.47 16 17 C -0.12 -2.64 9.94 21.23 0.21 -2.43 16 18 C -0.06 -1.25 6.27 21.24 0.13 -1.12 16 19 Cl -0.05 -0.98 29.11 -2.72 -0.08 -1.06 16 20 C -0.20 -3.64 11.08 66.73 0.74 -2.90 16 21 S 0.17 3.54 23.33 -56.49 -1.32 2.22 16 22 C -0.26 -13.71 8.53 22.86 0.20 -13.51 16 23 H 0.28 13.68 8.30 -92.71 -0.77 12.91 16 24 H 0.09 4.37 8.06 -2.91 -0.02 4.35 16 25 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 26 H 0.12 4.21 6.70 -2.91 -0.02 4.19 16 27 H 0.39 14.22 8.47 -92.71 -0.79 13.43 16 28 H 0.07 1.83 7.93 -2.38 -0.02 1.82 16 29 H 0.08 2.10 7.95 -2.39 -0.02 2.09 16 30 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 31 H 0.20 2.49 8.06 -2.91 -0.02 2.46 16 32 H 0.10 5.51 6.16 -2.91 -0.02 5.49 16 Total: -1.00 -60.16 308.30 2.61 -57.55 By element: Atomic # 1 Polarization: 29.36 SS G_CDS: 0.37 Total: 29.73 kcal Atomic # 6 Polarization: -60.20 SS G_CDS: 3.33 Total: -56.88 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -1.73 Total: -72.82 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Atomic # 16 Polarization: 3.54 SS G_CDS: -1.32 Total: 2.22 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -60.16 2.61 -57.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313454665.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.450 kcal (2) G-P(sol) polarization free energy of solvation -60.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds