Wall clock time and date at job start Tue Mar 31 2020 06:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86800 * 119.99637 * 2 1 4 4 H 1.48501 * 109.47066 * 269.99661 * 3 2 1 5 5 H 1.48495 * 109.47633 * 30.00060 * 3 2 1 6 6 H 1.48498 * 109.47136 * 150.00294 * 3 2 1 7 7 C 1.39924 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99740 * 192.15008 * 7 2 1 9 9 C 1.41404 * 120.00259 * 12.15470 * 7 2 1 10 10 C 1.40777 * 120.21118 * 208.41428 * 9 7 2 11 11 C 1.37647 * 119.89579 * 180.02562 * 10 9 7 12 12 C 1.38518 * 120.32748 * 359.74176 * 11 10 9 13 13 C 1.39302 * 120.41973 * 0.51780 * 12 11 10 14 14 N 1.39681 * 119.95022 * 179.76262 * 13 12 11 15 15 S 1.65602 * 119.99995 * 313.70230 * 14 13 12 16 16 O 1.42109 * 106.40093 * 184.29873 * 15 14 13 17 17 O 1.42097 * 106.40384 * 51.37457 * 15 14 13 18 18 C 1.76206 * 107.21505 * 297.83447 * 15 14 13 19 19 C 1.34668 * 125.98603 * 150.93732 * 18 15 14 20 20 N 1.36885 * 106.81643 * 180.02562 * 19 18 15 21 21 H 0.97000 * 126.39895 * 179.97438 * 20 19 18 22 22 C 1.35041 * 107.20385 * 0.02562 * 20 19 18 23 23 N 1.30502 * 108.69984 * 359.97438 * 22 20 19 24 24 C 1.38318 * 120.09772 * 359.48251 * 13 12 11 25 25 H 0.97001 * 119.99707 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.05450 * 359.97438 * 10 9 7 27 27 H 1.08006 * 119.83750 * 180.02562 * 11 10 9 28 28 H 1.07995 * 119.79074 * 180.27925 * 12 11 10 29 29 H 0.97002 * 119.99956 * 133.69887 * 14 13 12 30 30 H 1.08001 * 126.58930 * 0.05517 * 19 18 15 31 31 H 1.07997 * 125.65177 * 180.02562 * 22 20 19 32 32 H 1.07988 * 120.16191 * 180.23104 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2118 0.0005 8 1 3.0699 -1.2221 0.1974 9 6 1.3248 -2.4228 -0.2568 10 6 1.7933 -3.6311 0.2932 11 6 1.1235 -4.8062 0.0381 12 6 -0.0133 -4.8057 -0.7533 13 6 -0.4856 -3.6187 -1.3087 14 7 -1.6301 -3.6303 -2.1094 15 16 -1.8002 -4.7747 -3.2942 16 8 -3.0010 -4.4604 -3.9862 17 8 -1.5667 -6.0319 -2.6743 18 6 -0.4863 -4.5349 -4.4434 19 6 0.0850 -5.4892 -5.2026 20 7 1.0573 -4.8752 -5.9452 21 1 1.6448 -5.3010 -6.5891 22 6 1.0466 -3.5663 -5.6133 23 7 0.1207 -3.3701 -4.7147 24 6 0.1738 -2.4277 -1.0638 25 1 -0.4850 0.8401 -0.0004 26 1 2.6773 -3.6361 0.9136 27 1 1.4835 -5.7326 0.4608 28 1 -0.5346 -5.7321 -0.9442 29 1 -2.3253 -2.9680 -1.9714 30 1 -0.1744 -6.5374 -5.2222 31 1 1.6960 -2.8074 -6.0240 32 1 -0.1936 -1.5064 -1.4907 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313473912.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:56 Heat of formation + Delta-G solvation = 6.222471 kcal Electronic energy + Delta-G solvation = -21068.211285 eV Core-core repulsion = 17735.560011 eV Total energy + Delta-G solvation = -3332.651274 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.05313 -37.89070 -36.71562 -35.51799 -34.44751 -33.09134 -32.66716 -29.79991 -29.48860 -27.77874 -25.20571 -22.54931 -21.97464 -21.08502 -20.77377 -19.31267 -18.61408 -17.35759 -17.03792 -15.93910 -15.88529 -15.28257 -14.89882 -14.61685 -14.45843 -14.22572 -14.06522 -13.37729 -12.86135 -12.44963 -12.07697 -11.80904 -11.73236 -11.50787 -11.35880 -11.11118 -11.07970 -10.83406 -10.36958 -10.32474 -10.15133 -9.84554 -9.71831 -9.20999 -9.14071 -8.94451 -7.33055 -7.10727 -6.65027 -4.34742 0.83991 1.68250 2.78983 2.80179 2.96545 3.00984 3.10353 3.13117 3.24283 3.31332 3.97295 4.03558 4.63940 4.67275 4.90858 5.01957 5.28251 5.64389 5.67318 6.10278 6.23188 6.41899 6.72775 6.86366 7.09958 7.12703 7.15912 7.29167 7.41423 7.77462 7.79240 7.94194 8.05731 8.10418 8.33492 8.66522 8.93206 8.97558 10.26934 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.017642 B = 0.005704 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.742852 B = 4907.711858 C = 5313.039394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.115 3.885 10 C -0.225 4.225 11 C -0.085 4.085 12 C -0.260 4.260 13 C 0.145 3.855 14 N -1.036 6.036 15 S 2.728 3.272 16 O -0.970 6.970 17 O -0.953 6.953 18 C -0.542 4.542 19 C 0.060 3.940 20 N -0.563 5.563 21 H 0.424 0.576 22 C 0.186 3.814 23 N -0.405 5.405 24 C -0.146 4.146 25 H 0.279 0.721 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.123 0.877 29 H 0.420 0.580 30 H 0.192 0.808 31 H 0.216 0.784 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.588 -6.229 -10.831 12.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.112 3.888 10 C -0.245 4.245 11 C -0.104 4.104 12 C -0.282 4.282 13 C 0.051 3.949 14 N -0.789 5.789 15 S 2.814 3.186 16 O -0.960 6.960 17 O -0.942 6.942 18 C -0.753 4.753 19 C -0.082 4.082 20 N -0.165 5.165 21 H 0.262 0.738 22 C -0.101 4.101 23 N -0.123 5.123 24 C -0.169 4.169 25 H 0.090 0.910 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.140 0.860 29 H 0.257 0.743 30 H 0.209 0.791 31 H 0.233 0.767 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.604 -6.036 -10.566 12.184 hybrid contribution 1.349 0.551 -0.917 1.721 sum 1.953 -5.485 -11.483 12.875 Atomic orbital electron populations 1.69786 1.07370 1.28997 1.36486 1.25853 0.94807 1.01080 0.92434 0.86300 0.80337 0.80800 0.79142 1.19443 1.20381 1.18801 1.19516 0.96213 0.90517 1.43107 0.90545 1.17469 0.91030 0.92169 0.88119 1.21095 1.03408 0.93398 1.06616 1.20393 0.95387 0.96556 0.98093 1.20999 1.02491 0.96947 1.07779 1.17226 0.87039 0.95358 0.95255 1.52566 1.28389 1.50990 1.46965 1.01133 0.72052 0.73262 0.72121 1.93565 1.43542 1.84707 1.74188 1.93567 1.85898 1.40610 1.74170 1.33430 1.24179 0.95905 1.21767 1.22565 0.91748 0.99268 0.94625 1.43610 1.29068 1.10031 1.33778 0.73795 1.25402 1.01241 0.84858 0.98578 1.70397 1.06465 1.23653 1.11753 1.21342 0.98050 0.95948 1.01586 0.90977 0.88921 0.88910 0.85956 0.74345 0.79136 0.76720 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.51 10.89 55.55 0.61 -19.91 16 2 C 0.07 1.87 5.23 -17.34 -0.09 1.78 16 3 Si 0.91 18.69 29.58 -169.99 -5.03 13.66 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.16 9.06 -37.75 -0.34 -12.50 16 8 H 0.08 1.93 7.87 -52.48 -0.41 1.52 16 9 C 0.12 3.05 5.55 -106.85 -0.59 2.45 16 10 C -0.22 -5.50 9.79 -38.84 -0.38 -5.88 16 11 C -0.09 -1.95 10.01 -39.69 -0.40 -2.35 16 12 C -0.26 -6.01 9.23 -39.08 -0.36 -6.37 16 13 C 0.15 3.37 6.13 -83.86 -0.51 2.86 16 14 N -1.04 -20.67 5.76 32.37 0.19 -20.48 16 15 S 2.73 50.04 5.77 -107.50 -0.62 49.42 16 16 O -0.97 -19.05 18.02 -57.17 -1.03 -20.08 16 17 O -0.95 -18.48 15.05 -57.17 -0.86 -19.34 16 18 C -0.54 -9.26 6.95 -17.82 -0.12 -9.38 16 19 C 0.06 0.77 11.90 -16.56 -0.20 0.57 16 20 N -0.56 -5.65 6.15 -14.03 -0.09 -5.73 16 21 H 0.42 2.20 8.96 -40.82 -0.37 1.83 16 22 C 0.19 2.37 13.04 -90.38 -1.18 1.20 16 23 N -0.41 -7.16 11.25 -13.86 -0.16 -7.32 16 24 C -0.15 -3.73 8.58 -38.67 -0.33 -4.06 16 25 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 26 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 27 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 28 H 0.12 2.72 5.68 -52.49 -0.30 2.42 16 29 H 0.42 7.60 8.96 -34.47 -0.31 7.29 16 30 H 0.19 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.22 1.82 8.06 -52.49 -0.42 1.39 16 32 H 0.13 3.36 6.24 -52.49 -0.33 3.03 16 LS Contribution 297.50 15.07 4.48 4.48 Total: -1.00 -34.51 297.50 -9.55 -44.07 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -2.54 Total: 12.91 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: -4.51 Total: -31.68 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.55 Total: -53.44 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -1.89 Total: -39.42 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Atomic # 16 Polarization: 50.04 SS G_CDS: -0.62 Total: 49.42 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -34.51 -9.55 -44.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313473912.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.292 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds