Wall clock time and date at job start Tue Mar 31 2020 06:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86800 * 119.99637 * 2 1 4 4 H 1.48501 * 109.47066 * 269.99661 * 3 2 1 5 5 H 1.48495 * 109.47633 * 30.00060 * 3 2 1 6 6 H 1.48498 * 109.47136 * 150.00294 * 3 2 1 7 7 C 1.39924 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99740 * 192.15008 * 7 2 1 9 9 C 1.41404 * 120.00259 * 12.15470 * 7 2 1 10 10 C 1.40777 * 120.21118 * 208.41428 * 9 7 2 11 11 C 1.37647 * 119.89579 * 180.02562 * 10 9 7 12 12 C 1.38518 * 120.32748 * 359.74176 * 11 10 9 13 13 C 1.39302 * 120.41973 * 0.51780 * 12 11 10 14 14 N 1.39681 * 119.95022 * 179.76262 * 13 12 11 15 15 S 1.65602 * 119.99995 * 313.70230 * 14 13 12 16 16 O 1.42109 * 106.40093 * 184.29873 * 15 14 13 17 17 O 1.42097 * 106.40384 * 51.37457 * 15 14 13 18 18 C 1.76206 * 107.21505 * 297.83447 * 15 14 13 19 19 C 1.34668 * 125.98603 * 150.93732 * 18 15 14 20 20 N 1.36885 * 106.81643 * 180.02562 * 19 18 15 21 21 H 0.97000 * 126.39895 * 179.97438 * 20 19 18 22 22 C 1.35041 * 107.20385 * 0.02562 * 20 19 18 23 23 N 1.30502 * 108.69984 * 359.97438 * 22 20 19 24 24 C 1.38318 * 120.09772 * 359.48251 * 13 12 11 25 25 H 0.97001 * 119.99707 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.05450 * 359.97438 * 10 9 7 27 27 H 1.08006 * 119.83750 * 180.02562 * 11 10 9 28 28 H 1.07995 * 119.79074 * 180.27925 * 12 11 10 29 29 H 0.97002 * 119.99956 * 133.69887 * 14 13 12 30 30 H 1.08001 * 126.58930 * 0.05517 * 19 18 15 31 31 H 1.07997 * 125.65177 * 180.02562 * 22 20 19 32 32 H 1.07988 * 120.16191 * 180.23104 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4398 2.6527 0.7000 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2118 0.0005 8 1 3.0699 -1.2221 0.1974 9 6 1.3248 -2.4228 -0.2568 10 6 1.7933 -3.6311 0.2932 11 6 1.1235 -4.8062 0.0381 12 6 -0.0133 -4.8057 -0.7533 13 6 -0.4856 -3.6187 -1.3087 14 7 -1.6301 -3.6303 -2.1094 15 16 -1.8002 -4.7747 -3.2942 16 8 -3.0010 -4.4604 -3.9862 17 8 -1.5667 -6.0319 -2.6743 18 6 -0.4863 -4.5349 -4.4434 19 6 0.0850 -5.4892 -5.2026 20 7 1.0573 -4.8752 -5.9452 21 1 1.6448 -5.3010 -6.5891 22 6 1.0466 -3.5663 -5.6133 23 7 0.1207 -3.3701 -4.7147 24 6 0.1738 -2.4277 -1.0638 25 1 -0.4850 0.8401 -0.0004 26 1 2.6773 -3.6361 0.9136 27 1 1.4835 -5.7326 0.4608 28 1 -0.5346 -5.7321 -0.9442 29 1 -2.3253 -2.9680 -1.9714 30 1 -0.1744 -6.5374 -5.2222 31 1 1.6960 -2.8074 -6.0240 32 1 -0.1936 -1.5064 -1.4907 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313473912.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:56 Heat of formation + Delta-G solvation = -19.043781 kcal Electronic energy + Delta-G solvation = -21069.306912 eV Core-core repulsion = 17735.560011 eV Total energy + Delta-G solvation = -3333.746901 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.06894 -39.70431 -38.24014 -37.02703 -36.21911 -34.90523 -33.70609 -31.38442 -30.86860 -29.58203 -27.11857 -23.66252 -23.04903 -22.94555 -22.54105 -20.47060 -20.02076 -19.07879 -18.59955 -17.64005 -17.19669 -16.79048 -16.42610 -16.30875 -15.84147 -15.34836 -15.19444 -14.95333 -14.62130 -14.22195 -13.78042 -13.37105 -13.30766 -13.25583 -12.87657 -12.78089 -12.71707 -12.60819 -12.06766 -11.64793 -11.60090 -11.36878 -11.23824 -11.04002 -10.93773 -10.02920 -9.25047 -8.93900 -8.50783 -6.31826 -0.58218 0.65121 0.97718 1.15684 1.41828 1.53765 1.55547 1.69469 1.87391 2.14035 2.25328 2.65025 2.79516 3.56827 3.74285 3.81193 4.11331 4.19635 4.41906 4.64115 4.67543 4.88315 5.02552 5.20750 5.21996 5.28793 5.46180 5.60305 5.96472 6.07127 6.16180 6.26227 6.35901 6.44240 6.75605 6.79374 7.00213 7.06279 8.42221 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.017642 B = 0.005704 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.742852 B = 4907.711858 C = 5313.039394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.034 3.966 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.496 4.496 8 H 0.076 0.924 9 C 0.087 3.913 10 C -0.241 4.241 11 C -0.082 4.082 12 C -0.267 4.267 13 C 0.158 3.842 14 N -1.043 6.043 15 S 2.747 3.253 16 O -0.988 6.988 17 O -0.966 6.966 18 C -0.588 4.588 19 C 0.080 3.920 20 N -0.539 5.539 21 H 0.449 0.551 22 C 0.193 3.807 23 N -0.465 5.465 24 C -0.168 4.168 25 H 0.286 0.714 26 H 0.102 0.898 27 H 0.126 0.874 28 H 0.133 0.867 29 H 0.424 0.576 30 H 0.228 0.772 31 H 0.253 0.747 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.898 -6.921 -12.110 14.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.526 4.526 8 H 0.094 0.906 9 C 0.084 3.916 10 C -0.261 4.261 11 C -0.100 4.100 12 C -0.289 4.289 13 C 0.063 3.937 14 N -0.794 5.794 15 S 2.837 3.163 16 O -0.978 6.978 17 O -0.956 6.956 18 C -0.801 4.801 19 C -0.065 4.065 20 N -0.142 5.142 21 H 0.293 0.707 22 C -0.095 4.095 23 N -0.184 5.184 24 C -0.192 4.192 25 H 0.096 0.904 26 H 0.120 0.880 27 H 0.144 0.856 28 H 0.151 0.849 29 H 0.261 0.739 30 H 0.245 0.755 31 H 0.269 0.731 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.900 -6.758 -11.835 13.760 hybrid contribution 0.939 0.656 -0.636 1.311 sum 2.839 -6.101 -12.471 14.171 Atomic orbital electron populations 1.69858 1.08786 1.30217 1.36760 1.26693 0.95572 1.04279 0.91464 0.85210 0.79012 0.76172 0.79321 1.18868 1.19566 1.18211 1.19769 0.96436 0.91592 1.44815 0.90559 1.17847 0.91755 0.93229 0.88738 1.21280 1.04152 0.93478 1.07158 1.20745 0.94722 0.97357 0.97215 1.21244 1.02808 0.97159 1.07708 1.17209 0.87160 0.94729 0.94581 1.52627 1.27634 1.51371 1.47813 1.00233 0.72063 0.72279 0.71693 1.93538 1.45152 1.84842 1.74250 1.93528 1.86300 1.41042 1.74729 1.32924 1.25737 0.97537 1.23911 1.23124 0.90557 1.00144 0.92645 1.43538 1.28312 1.09153 1.33227 0.70721 1.26086 1.00037 0.86436 0.96978 1.70302 1.08813 1.24779 1.14466 1.21200 0.99010 0.96077 1.02880 0.90390 0.87955 0.85587 0.84912 0.73932 0.75530 0.73147 0.87422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.62 10.89 21.82 0.24 -43.38 16 2 C 0.03 1.71 5.23 85.25 0.45 2.16 16 3 Si 0.98 38.44 29.58 68.60 2.03 40.47 16 4 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 6 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 7 C -0.50 -26.65 9.06 23.46 0.21 -26.43 16 8 H 0.08 3.93 7.87 -2.91 -0.02 3.91 16 9 C 0.09 4.73 5.55 -21.31 -0.12 4.61 16 10 C -0.24 -11.80 9.79 22.75 0.22 -11.58 16 11 C -0.08 -3.65 10.01 22.20 0.22 -3.43 16 12 C -0.27 -12.22 9.23 22.59 0.21 -12.01 16 13 C 0.16 7.45 6.13 38.17 0.23 7.68 16 14 N -1.04 -42.56 5.76 -51.49 -0.30 -42.85 16 15 S 2.75 100.55 5.77 -56.49 -0.33 100.22 16 16 O -0.99 -39.00 18.02 -128.00 -2.31 -41.31 16 17 O -0.97 -36.69 15.05 -128.00 -1.93 -38.62 16 18 C -0.59 -19.52 6.95 83.52 0.58 -18.94 16 19 C 0.08 1.83 11.90 83.09 0.99 2.82 16 20 N -0.54 -8.96 6.15 -198.30 -1.22 -10.18 16 21 H 0.45 2.74 8.96 -92.71 -0.83 1.91 16 22 C 0.19 4.47 13.04 180.26 2.35 6.82 16 23 N -0.47 -16.15 11.25 -197.78 -2.23 -18.37 16 24 C -0.17 -8.88 8.58 22.86 0.20 -8.69 16 25 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 26 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 27 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 28 H 0.13 5.77 5.68 -2.91 -0.02 5.75 16 29 H 0.42 16.04 8.96 -96.74 -0.87 15.17 16 30 H 0.23 3.29 8.06 -2.91 -0.02 3.26 16 31 H 0.25 3.49 8.06 -2.91 -0.02 3.46 16 32 H 0.11 6.01 6.24 -2.92 -0.02 5.99 16 Total: -1.00 -76.20 297.50 -0.99 -77.19 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: -0.50 Total: 33.83 kcal Atomic # 6 Polarization: -62.53 SS G_CDS: 5.54 Total: -56.98 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -3.50 Total: -114.79 kcal Atomic # 8 Polarization: -75.70 SS G_CDS: -4.23 Total: -79.93 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Atomic # 16 Polarization: 100.55 SS G_CDS: -0.33 Total: 100.22 kcal Total: -76.20 -0.99 -77.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313473912.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.142 kcal (2) G-P(sol) polarization free energy of solvation -76.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds