Wall clock time and date at job start Tue Mar 31 2020 07:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40412 * 122.21669 * 2 1 4 4 C 1.41594 * 128.82117 * 0.02562 * 3 2 1 5 5 C 1.36091 * 120.47458 * 180.02562 * 4 3 2 6 6 F 1.35108 * 119.67923 * 179.97438 * 5 4 3 7 7 C 1.39157 * 120.64568 * 359.97224 * 5 4 3 8 8 C 1.37393 * 120.15794 * 359.57463 * 7 5 4 9 9 C 1.39881 * 120.21565 * 0.66880 * 8 7 5 10 10 S 1.76003 * 130.54742 * 179.25771 * 9 8 7 11 11 C 1.33700 * 122.20885 * 180.28867 * 2 1 3 12 12 C 1.46999 * 124.66192 * 359.97438 * 11 2 1 13 13 O 1.21646 * 120.00312 * 0.02562 * 12 11 2 14 14 N 1.34778 * 119.99569 * 179.97438 * 12 11 2 15 15 C 1.46497 * 119.99963 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47429 * 180.02562 * 15 14 12 17 17 H 1.08006 * 119.99800 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00244 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99799 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00117 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46898 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47038 * 119.99583 * 20 18 16 23 23 H 1.48499 * 109.47003 * 240.00169 * 20 18 16 24 24 H 1.08999 * 109.46995 * 269.73703 * 1 2 3 25 25 H 1.08994 * 109.46790 * 29.73389 * 1 2 3 26 26 H 1.08997 * 109.47305 * 149.73830 * 1 2 3 27 27 H 1.07998 * 119.76129 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.92111 * 180.02562 * 7 5 4 29 29 H 1.08002 * 119.88816 * 179.97438 * 8 7 5 30 30 H 0.96996 * 119.99957 * 0.02562 * 14 12 11 31 31 H 1.09004 * 109.47340 * 300.00429 * 15 14 12 32 32 H 1.09004 * 109.47046 * 60.00311 * 15 14 12 33 33 H 0.97002 * 120.00356 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2556 1.1879 0.0000 4 6 1.7955 2.5270 0.0005 5 6 2.6805 3.5609 -0.0001 6 9 2.2238 4.8324 -0.0002 7 6 4.0513 3.3212 -0.0007 8 6 4.5266 2.0322 0.0082 9 6 3.6361 0.9535 0.0038 10 16 3.9391 -0.7803 -0.0047 11 6 2.2197 -1.1312 -0.0057 12 6 1.6423 -2.4831 -0.0120 13 8 0.4346 -2.6286 -0.0127 14 7 2.4510 -3.5612 -0.0180 15 6 1.8757 -4.9084 -0.0248 16 6 2.9850 -5.9284 -0.0300 17 1 4.0156 -5.6054 -0.0279 18 6 2.6843 -7.2740 -0.0373 19 7 1.4294 -7.6673 -0.0403 20 14 4.0593 -8.5384 -0.0430 21 1 5.3714 -7.8428 -0.0390 22 1 3.9491 -9.3951 1.1649 23 1 3.9508 -9.3823 -1.2601 24 1 -0.3633 -0.0047 1.0276 25 1 -0.3633 0.8923 -0.5097 26 1 -0.3634 -0.8876 -0.5179 27 1 0.7347 2.7294 0.0005 28 1 4.7432 4.1505 -0.0007 29 1 5.5914 1.8512 0.0074 30 1 3.4140 -3.4451 -0.0178 31 1 1.2607 -5.0454 0.8647 32 1 1.2601 -5.0361 -0.9152 33 1 1.2177 -8.6139 -0.0451 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334192639.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:56 Heat of formation + Delta-G solvation = -64.796405 kcal Electronic energy + Delta-G solvation = -19751.963526 eV Core-core repulsion = 16396.312681 eV Total energy + Delta-G solvation = -3355.650845 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.063 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.94746 -41.27543 -40.28104 -36.86055 -36.11772 -34.45893 -32.09922 -31.15900 -30.17577 -28.58202 -25.72334 -24.43481 -23.77515 -22.10209 -20.87439 -19.69657 -18.75639 -18.00730 -17.68616 -17.21329 -16.86788 -16.72571 -16.42023 -16.08624 -15.95719 -15.06633 -15.04913 -14.89740 -14.53975 -14.17202 -14.07756 -13.96047 -13.62279 -13.49195 -12.93752 -12.86264 -12.76881 -12.27624 -12.23924 -11.91776 -11.89799 -11.49379 -10.92412 -10.85246 -10.72174 -10.04397 -9.61714 -8.79842 -8.31961 -6.48845 -0.89170 -0.04587 0.25981 0.71256 0.76811 1.42777 1.43776 1.57357 2.01365 2.18316 2.41756 2.42275 3.03278 3.11298 3.48226 3.60454 3.81339 3.94073 4.10341 4.28948 4.37662 4.52012 4.68132 4.72410 4.91222 4.99621 5.01160 5.02109 5.18059 5.18650 5.29917 5.46587 5.58192 5.69420 5.79042 6.57569 6.69215 7.12721 7.27862 8.80352 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.034383 B = 0.003352 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.154929 B = 8352.250490 C = 9145.929908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.010 4.010 3 C -0.073 4.073 4 C -0.108 4.108 5 C 0.093 3.907 6 F -0.139 7.139 7 C -0.112 4.112 8 C -0.052 4.052 9 C -0.148 4.148 10 S 0.157 5.843 11 C -0.251 4.251 12 C 0.568 3.432 13 O -0.569 6.569 14 N -0.701 5.701 15 C 0.267 3.733 16 C -0.559 4.559 17 H 0.081 0.919 18 C 0.007 3.993 19 N -0.928 5.928 20 Si 0.984 3.016 21 H -0.254 1.254 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.074 0.926 27 H 0.154 0.846 28 H 0.179 0.821 29 H 0.171 0.829 30 H 0.402 0.598 31 H -0.004 1.004 32 H -0.004 1.004 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.505 23.492 0.089 24.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.025 4.025 3 C -0.081 4.081 4 C -0.129 4.129 5 C 0.071 3.929 6 F -0.118 7.118 7 C -0.134 4.134 8 C -0.074 4.074 9 C -0.265 4.265 10 S 0.426 5.574 11 C -0.369 4.369 12 C 0.355 3.645 13 O -0.452 6.452 14 N -0.350 5.350 15 C 0.145 3.855 16 C -0.597 4.597 17 H 0.099 0.901 18 C -0.193 4.193 19 N -0.566 5.566 20 Si 0.807 3.193 21 H -0.177 1.177 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.099 0.901 25 H 0.111 0.889 26 H 0.093 0.907 27 H 0.172 0.828 28 H 0.196 0.804 29 H 0.189 0.811 30 H 0.237 0.763 31 H 0.014 0.986 32 H 0.014 0.986 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.850 22.194 0.081 23.894 hybrid contribution -1.021 -0.085 0.020 1.025 sum 7.829 22.109 0.101 23.454 Atomic orbital electron populations 1.20902 0.88294 1.04298 1.03611 1.19174 0.98551 0.89818 0.94947 1.17748 0.91725 0.93069 1.05570 1.20819 1.01578 0.89319 1.01209 1.17157 0.93112 0.78591 1.03998 1.91530 1.89732 1.36437 1.94083 1.21467 0.93596 0.98473 0.99893 1.20720 1.00337 0.88843 0.97547 1.23287 0.96997 0.98453 1.07791 1.83975 1.00381 0.96749 1.76270 1.23471 0.99363 0.96331 1.17737 1.17575 0.86324 0.83822 0.76828 1.90693 1.15229 1.86524 1.52723 1.46149 1.09901 1.06560 1.72342 1.18665 0.94321 0.77675 0.94792 1.21597 0.93333 0.91403 1.53376 0.90071 1.26032 0.98677 1.00909 0.93666 1.70126 1.19799 1.17023 1.49648 0.85113 0.78579 0.77756 0.77814 1.17722 1.20285 1.20297 0.90089 0.88942 0.90742 0.82796 0.80400 0.81109 0.76263 0.98629 0.98627 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.16 9.22 71.24 0.66 -2.51 16 2 C -0.01 -0.30 5.86 -20.36 -0.12 -0.42 16 3 C -0.07 -1.73 5.85 -21.49 -0.13 -1.86 16 4 C -0.11 -2.07 9.58 22.60 0.22 -1.85 16 5 C 0.09 1.54 7.22 21.99 0.16 1.70 16 6 F -0.14 -2.39 17.25 44.97 0.78 -1.62 16 7 C -0.11 -1.40 10.01 22.29 0.22 -1.17 16 8 C -0.05 -0.75 10.07 22.47 0.23 -0.52 16 9 C -0.15 -3.20 6.50 23.10 0.15 -3.05 16 10 S 0.16 3.98 22.26 -56.49 -1.26 2.72 16 11 C -0.25 -8.43 6.32 23.54 0.15 -8.28 16 12 C 0.57 24.55 7.77 86.54 0.67 25.22 16 13 O -0.57 -28.22 13.90 -4.18 -0.06 -28.28 16 14 N -0.70 -31.51 5.54 -470.52 -2.61 -34.12 16 15 C 0.27 14.84 5.43 85.63 0.46 15.30 16 16 C -0.56 -30.67 9.28 25.60 0.24 -30.43 16 17 H 0.08 4.07 7.60 -2.91 -0.02 4.05 16 18 C 0.01 0.40 5.46 84.66 0.46 0.86 16 19 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 20 Si 0.98 42.18 29.54 68.60 2.03 44.20 16 21 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 22 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 24 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.09 1.94 7.33 -2.39 -0.02 1.92 16 26 H 0.07 2.60 5.72 -2.39 -0.01 2.59 16 27 H 0.15 2.44 7.41 -2.91 -0.02 2.42 16 28 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 29 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 30 H 0.40 15.67 7.37 -92.71 -0.68 14.98 16 31 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 32 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 33 H 0.27 15.02 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -69.46 305.93 3.02 -66.44 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.49 Total: 12.92 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 3.37 Total: -7.01 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -2.32 Total: -89.37 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.06 Total: -28.28 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.78 Total: -1.62 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.26 Total: 2.72 kcal Total: -69.46 3.02 -66.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334192639.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.640 kcal (2) G-P(sol) polarization free energy of solvation -69.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds