Wall clock time and date at job start Tue Mar 31 2020 07:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33697 * 122.21164 * 2 1 4 4 C 1.46946 * 124.66847 * 359.97438 * 3 2 1 5 5 O 1.21655 * 119.99435 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00126 * 179.72695 * 4 3 2 7 7 C 1.46506 * 119.99577 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.46559 * 179.97438 * 7 6 4 9 9 H 1.08002 * 120.00332 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99699 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00036 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 120.00010 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46942 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47020 * 119.99661 * 12 10 8 15 15 H 1.48502 * 109.46685 * 239.99953 * 12 10 8 16 16 S 1.75477 * 110.67103 * 180.24668 * 3 2 1 17 17 C 1.76019 * 91.61786 * 359.65190 * 16 3 2 18 18 C 1.39889 * 130.50936 * 180.02562 * 17 16 3 19 19 C 1.37393 * 120.38733 * 180.36417 * 18 17 16 20 20 C 1.38931 * 120.22248 * 359.95273 * 19 18 17 21 21 C 1.37163 * 120.52011 * 0.02562 * 20 19 18 22 22 F 1.35091 * 119.84022 * 180.02562 * 21 20 19 23 23 C 1.40017 * 109.53389 * 0.34338 * 17 16 3 24 24 H 1.09001 * 109.47439 * 90.02470 * 1 2 3 25 25 H 1.08998 * 109.47076 * 210.02408 * 1 2 3 26 26 H 1.09005 * 109.47474 * 330.02179 * 1 2 3 27 27 H 0.96995 * 119.99715 * 359.97438 * 6 4 3 28 28 H 1.08999 * 109.46879 * 299.99061 * 7 6 4 29 29 H 1.08993 * 109.47500 * 59.99674 * 7 6 4 30 30 H 0.97005 * 119.99861 * 179.97438 * 11 10 8 31 31 H 1.07994 * 119.80534 * 0.33911 * 18 17 16 32 32 H 1.07991 * 119.88803 * 179.97438 * 19 18 17 33 33 H 1.07999 * 119.73627 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2197 1.1312 0.0000 4 6 1.6427 2.4826 -0.0005 5 8 0.4349 2.6282 -0.0015 6 7 2.4514 3.5607 0.0051 7 6 1.8761 4.9080 0.0051 8 6 2.9855 5.9279 0.0126 9 1 4.0160 5.6048 0.0173 10 6 2.6849 7.2735 0.0134 11 7 1.4300 7.6669 0.0071 12 14 4.0601 8.5378 0.0219 13 1 5.3720 7.8421 0.0275 14 1 3.9564 9.3901 -1.1897 15 1 3.9449 9.3861 1.2353 16 16 3.9389 0.7801 -0.0071 17 6 3.6357 -0.9537 0.0007 18 6 4.5268 -2.0321 0.0008 19 6 4.0559 -3.3228 0.0002 20 6 2.6884 -3.5683 0.0005 21 6 1.7940 -2.5284 0.0008 22 9 0.4673 -2.7829 0.0016 23 6 2.2552 -1.1875 0.0004 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3634 0.8902 0.5135 27 1 3.4144 3.4445 0.0098 28 1 1.2649 5.0421 -0.8874 29 1 1.2569 5.0387 0.8925 30 1 1.2185 8.6136 0.0081 31 1 5.5911 -1.8489 0.0010 32 1 4.7510 -4.1492 -0.0001 33 1 2.3269 -4.5860 0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334407060.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:01 Heat of formation + Delta-G solvation = -45.133425 kcal Electronic energy + Delta-G solvation = -19999.243974 eV Core-core repulsion = 16644.445780 eV Total energy + Delta-G solvation = -3354.798194 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.063 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.16454 -39.98737 -38.83733 -35.89997 -34.29090 -32.43855 -30.98065 -30.08211 -28.69124 -26.95644 -24.16924 -23.47391 -22.39904 -20.65914 -19.48483 -18.70187 -17.28728 -16.66303 -16.42070 -15.95540 -15.78291 -15.42511 -14.98278 -14.78411 -14.56006 -14.32140 -13.61550 -13.50053 -12.99897 -12.96025 -12.67943 -12.53297 -12.05819 -11.90381 -11.81904 -11.37550 -11.07394 -10.97663 -10.93063 -10.87471 -10.34311 -9.64265 -9.43723 -9.22700 -8.85497 -8.77574 -8.02219 -7.76091 -6.21001 -4.28290 0.15241 0.76627 1.26812 1.74620 1.83020 3.19924 3.21716 3.28774 3.31939 3.65095 3.77057 3.97104 4.30192 4.45033 4.46794 4.65476 4.91500 5.15567 5.16251 5.28520 5.36996 5.57965 5.63302 5.71030 5.88444 5.92018 5.95013 6.27534 6.44451 6.60997 7.20807 7.26845 7.43322 7.58749 7.89774 8.45498 8.67049 8.90406 9.38064 10.89187 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.030284 B = 0.003647 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.372981 B = 7676.749123 C = 8580.650300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.018 4.018 3 C -0.213 4.213 4 C 0.569 3.431 5 O -0.532 6.532 6 N -0.701 5.701 7 C 0.249 3.751 8 C -0.545 4.545 9 H 0.064 0.936 10 C 0.065 3.935 11 N -0.884 5.884 12 Si 0.905 3.095 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.281 1.281 16 S 0.142 5.858 17 C -0.113 4.113 18 C -0.095 4.095 19 C -0.073 4.073 20 C -0.162 4.162 21 C 0.147 3.853 22 F -0.128 7.128 23 C -0.109 4.109 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.104 0.896 27 H 0.389 0.611 28 H 0.032 0.968 29 H 0.032 0.968 30 H 0.266 0.734 31 H 0.135 0.865 32 H 0.141 0.859 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.297 -22.242 0.024 23.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.031 4.031 3 C -0.332 4.332 4 C 0.353 3.647 5 O -0.412 6.412 6 N -0.349 5.349 7 C 0.129 3.871 8 C -0.584 4.584 9 H 0.082 0.918 10 C -0.139 4.139 11 N -0.521 5.521 12 Si 0.732 3.268 13 H -0.196 1.196 14 H -0.207 1.207 15 H -0.207 1.207 16 S 0.411 5.589 17 C -0.230 4.230 18 C -0.118 4.118 19 C -0.095 4.095 20 C -0.183 4.183 21 C 0.126 3.874 22 F -0.107 7.107 23 C -0.119 4.119 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.123 0.877 27 H 0.222 0.778 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.153 0.847 32 H 0.158 0.842 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.566 -20.855 0.012 21.864 hybrid contribution -0.233 -0.212 -0.016 0.315 sum 6.333 -21.067 -0.004 21.999 Atomic orbital electron populations 1.21023 0.88194 1.04784 1.03547 1.18902 0.98311 0.89174 0.96711 1.23878 0.96633 0.98483 1.14213 1.17025 0.86816 0.82464 0.78437 1.90723 1.13583 1.85481 1.51406 1.46434 1.09121 1.07819 1.71485 1.19222 0.94755 0.74936 0.98159 1.21233 0.92667 0.90968 1.53486 0.91777 1.24944 0.95950 0.98465 0.94554 1.69980 1.17165 1.16262 1.48733 0.86342 0.81651 0.81028 0.77809 1.19563 1.20723 1.20727 1.84233 1.03561 0.95115 1.75960 1.22869 0.95625 0.98873 1.05655 1.20513 0.99049 0.90532 1.01681 1.20872 0.94494 0.96425 0.97688 1.20891 0.93335 0.98582 1.05508 1.17570 0.77586 0.91532 1.00698 1.91486 1.31310 1.94558 1.93320 1.18062 0.92702 0.92611 1.08493 0.90523 0.91379 0.87725 0.77807 0.95025 0.95030 0.92409 0.84687 0.84151 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 8.93 36.00 0.32 -1.50 16 2 C -0.02 -0.28 5.86 -105.42 -0.62 -0.90 16 3 C -0.21 -3.67 6.31 -37.65 -0.24 -3.90 16 4 C 0.57 11.97 7.77 -12.74 -0.10 11.87 16 5 O -0.53 -12.63 13.90 5.23 0.07 -12.55 16 6 N -0.70 -15.29 5.54 -62.72 -0.35 -15.64 16 7 C 0.25 6.59 5.43 -5.19 -0.03 6.56 16 8 C -0.55 -14.76 9.28 -34.44 -0.32 -15.07 16 9 H 0.06 1.63 7.60 -52.49 -0.40 1.23 16 10 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 11 N -0.88 -25.80 13.29 55.43 0.74 -25.07 16 12 Si 0.90 20.72 29.54 -169.99 -5.02 15.69 16 13 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 16 S 0.14 1.93 22.26 -107.50 -2.39 -0.46 16 17 C -0.11 -1.41 6.50 -38.30 -0.25 -1.65 16 18 C -0.09 -0.87 10.06 -39.27 -0.39 -1.26 16 19 C -0.07 -0.55 10.03 -39.63 -0.40 -0.95 16 20 C -0.16 -1.43 9.96 -39.72 -0.40 -1.82 16 21 C 0.15 1.75 7.34 -38.61 -0.28 1.47 16 22 F -0.13 -1.58 14.89 2.25 0.03 -1.55 16 23 C -0.11 -1.51 5.85 -107.07 -0.63 -2.13 16 24 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.07 0.93 6.25 -51.93 -0.32 0.61 16 26 H 0.10 1.86 5.73 -51.93 -0.30 1.56 16 27 H 0.39 7.51 7.37 -40.82 -0.30 7.21 16 28 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 33 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 303.35 15.07 4.57 4.57 Total: -1.00 -31.10 303.35 -8.76 -39.87 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -2.99 Total: 2.74 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -3.42 Total: -7.61 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: 0.39 Total: -40.70 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.07 Total: -12.55 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.03 Total: -1.55 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.39 Total: -0.46 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.10 -8.76 -39.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334407060.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.266 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds