Wall clock time and date at job start Tue Mar 31 2020 07:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33697 * 122.21164 * 2 1 4 4 C 1.46946 * 124.66847 * 359.97438 * 3 2 1 5 5 O 1.21655 * 119.99435 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00126 * 179.72695 * 4 3 2 7 7 C 1.46506 * 119.99577 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.46559 * 179.97438 * 7 6 4 9 9 H 1.08002 * 120.00332 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99699 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00036 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 120.00010 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.46942 * 359.97438 * 12 10 8 14 14 H 1.48497 * 109.47020 * 119.99661 * 12 10 8 15 15 H 1.48502 * 109.46685 * 239.99953 * 12 10 8 16 16 S 1.75477 * 110.67103 * 180.24668 * 3 2 1 17 17 C 1.76019 * 91.61786 * 359.65190 * 16 3 2 18 18 C 1.39889 * 130.50936 * 180.02562 * 17 16 3 19 19 C 1.37393 * 120.38733 * 180.36417 * 18 17 16 20 20 C 1.38931 * 120.22248 * 359.95273 * 19 18 17 21 21 C 1.37163 * 120.52011 * 0.02562 * 20 19 18 22 22 F 1.35091 * 119.84022 * 180.02562 * 21 20 19 23 23 C 1.40017 * 109.53389 * 0.34338 * 17 16 3 24 24 H 1.09001 * 109.47439 * 90.02470 * 1 2 3 25 25 H 1.08998 * 109.47076 * 210.02408 * 1 2 3 26 26 H 1.09005 * 109.47474 * 330.02179 * 1 2 3 27 27 H 0.96995 * 119.99715 * 359.97438 * 6 4 3 28 28 H 1.08999 * 109.46879 * 299.99061 * 7 6 4 29 29 H 1.08993 * 109.47500 * 59.99674 * 7 6 4 30 30 H 0.97005 * 119.99861 * 179.97438 * 11 10 8 31 31 H 1.07994 * 119.80534 * 0.33911 * 18 17 16 32 32 H 1.07991 * 119.88803 * 179.97438 * 19 18 17 33 33 H 1.07999 * 119.73627 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2197 1.1312 0.0000 4 6 1.6427 2.4826 -0.0005 5 8 0.4349 2.6282 -0.0015 6 7 2.4514 3.5607 0.0051 7 6 1.8761 4.9080 0.0051 8 6 2.9855 5.9279 0.0126 9 1 4.0160 5.6048 0.0173 10 6 2.6849 7.2735 0.0134 11 7 1.4300 7.6669 0.0071 12 14 4.0601 8.5378 0.0219 13 1 5.3720 7.8421 0.0275 14 1 3.9564 9.3901 -1.1897 15 1 3.9449 9.3861 1.2353 16 16 3.9389 0.7801 -0.0071 17 6 3.6357 -0.9537 0.0007 18 6 4.5268 -2.0321 0.0008 19 6 4.0559 -3.3228 0.0002 20 6 2.6884 -3.5683 0.0005 21 6 1.7940 -2.5284 0.0008 22 9 0.4673 -2.7829 0.0016 23 6 2.2552 -1.1875 0.0004 24 1 -0.3634 -0.0004 -1.0276 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3634 0.8902 0.5135 27 1 3.4144 3.4445 0.0098 28 1 1.2649 5.0421 -0.8874 29 1 1.2569 5.0387 0.8925 30 1 1.2185 8.6136 0.0081 31 1 5.5911 -1.8489 0.0010 32 1 4.7510 -4.1492 -0.0001 33 1 2.3269 -4.5860 0.0004 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334407060.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:00 Heat of formation + Delta-G solvation = -64.780995 kcal Electronic energy + Delta-G solvation = -20000.095957 eV Core-core repulsion = 16644.445780 eV Total energy + Delta-G solvation = -3355.650177 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.063 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.05472 -41.20058 -40.21962 -37.03944 -36.17412 -34.47449 -31.83833 -31.10059 -30.24084 -28.67494 -25.57952 -24.55874 -23.81979 -22.10912 -20.90995 -19.77671 -18.75123 -17.93655 -17.56691 -17.20295 -16.91341 -16.78255 -16.44169 -16.38400 -15.84784 -15.57818 -14.94407 -14.84077 -14.31978 -14.10107 -13.97606 -13.86645 -13.69611 -13.65430 -12.91711 -12.77455 -12.70241 -12.38537 -12.24586 -12.04870 -11.92947 -11.50512 -10.94209 -10.86326 -10.55806 -10.07752 -9.71810 -8.75067 -8.32755 -6.50007 -0.89661 -0.01671 0.23579 0.65799 0.74619 1.42103 1.43473 1.57092 1.99935 2.16666 2.41392 2.44573 3.02365 3.11257 3.45011 3.61693 3.82699 3.83223 4.23587 4.26531 4.35331 4.48945 4.60531 4.76297 4.92838 4.97207 5.06035 5.14480 5.16043 5.24462 5.26234 5.40789 5.56603 5.74701 5.77516 6.55877 6.67283 7.10790 7.26387 8.79662 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.030284 B = 0.003647 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.372981 B = 7676.749123 C = 8580.650300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.008 4.008 3 C -0.258 4.258 4 C 0.568 3.432 5 O -0.571 6.571 6 N -0.700 5.700 7 C 0.267 3.733 8 C -0.560 4.560 9 H 0.082 0.918 10 C 0.007 3.993 11 N -0.928 5.928 12 Si 0.986 3.014 13 H -0.253 1.253 14 H -0.277 1.277 15 H -0.277 1.277 16 S 0.162 5.838 17 C -0.113 4.113 18 C -0.097 4.097 19 C -0.045 4.045 20 C -0.147 4.147 21 C 0.128 3.872 22 F -0.137 7.137 23 C -0.142 4.142 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.402 0.598 28 H -0.005 1.005 29 H -0.005 1.005 30 H 0.270 0.730 31 H 0.166 0.834 32 H 0.190 0.810 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.907 -25.338 0.003 27.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.023 4.023 3 C -0.377 4.377 4 C 0.355 3.645 5 O -0.454 6.454 6 N -0.348 5.348 7 C 0.145 3.855 8 C -0.597 4.597 9 H 0.100 0.900 10 C -0.193 4.193 11 N -0.566 5.566 12 Si 0.809 3.191 13 H -0.177 1.177 14 H -0.202 1.202 15 H -0.202 1.202 16 S 0.431 5.569 17 C -0.230 4.230 18 C -0.120 4.120 19 C -0.067 4.067 20 C -0.168 4.168 21 C 0.107 3.893 22 F -0.115 7.115 23 C -0.151 4.151 24 H 0.095 0.905 25 H 0.104 0.896 26 H 0.094 0.906 27 H 0.238 0.762 28 H 0.013 0.987 29 H 0.013 0.987 30 H 0.079 0.921 31 H 0.184 0.816 32 H 0.207 0.793 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 10.200 -23.986 -0.009 26.064 hybrid contribution -1.371 0.449 -0.010 1.443 sum 8.829 -23.537 -0.019 25.138 Atomic orbital electron populations 1.20950 0.88868 1.04133 1.03351 1.19133 0.98271 0.90142 0.94705 1.23375 0.99523 0.96178 1.18581 1.17555 0.86313 0.83836 0.76808 1.90691 1.15339 1.86556 1.52830 1.46133 1.09860 1.06506 1.72346 1.18677 0.94389 0.77660 0.94760 1.21592 0.93296 0.91386 1.53463 0.90010 1.26057 0.98744 1.00924 0.93608 1.70135 1.19866 1.17032 1.49610 0.85090 0.78499 0.77682 0.77842 1.17679 1.20242 1.20247 1.83917 1.00026 0.96644 1.76351 1.23114 0.95647 0.98685 1.05575 1.21011 1.00145 0.90112 1.00707 1.21504 0.94566 0.97009 0.93620 1.21397 0.93512 0.99147 1.02753 1.17881 0.77879 0.91536 1.02011 1.91462 1.32068 1.94489 1.93525 1.18085 0.93255 0.92641 1.11093 0.90484 0.89603 0.90561 0.76232 0.98678 0.98683 0.92083 0.81648 0.79285 0.80905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.80 8.93 71.24 0.64 -3.17 16 2 C -0.01 -0.27 5.86 -20.38 -0.12 -0.39 16 3 C -0.26 -9.30 6.31 23.52 0.15 -9.15 16 4 C 0.57 25.73 7.77 86.52 0.67 26.40 16 5 O -0.57 -29.69 13.90 -4.21 -0.06 -29.75 16 6 N -0.70 -32.44 5.54 -470.57 -2.61 -35.04 16 7 C 0.27 15.13 5.43 85.63 0.46 15.59 16 8 C -0.56 -31.11 9.28 25.60 0.24 -30.87 16 9 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 10 C 0.01 0.37 5.46 84.66 0.46 0.83 16 11 N -0.93 -56.18 13.29 21.45 0.28 -55.89 16 12 Si 0.99 42.56 29.54 68.60 2.03 44.59 16 13 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 14 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 15 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 16 S 0.16 4.29 22.26 -56.49 -1.26 3.04 16 17 C -0.11 -2.55 6.50 23.10 0.15 -2.40 16 18 C -0.10 -1.30 10.06 22.47 0.23 -1.08 16 19 C -0.05 -0.40 10.03 22.24 0.22 -0.18 16 20 C -0.15 -1.87 9.96 22.18 0.22 -1.64 16 21 C 0.13 2.75 7.34 22.90 0.17 2.92 16 22 F -0.14 -3.20 14.89 44.97 0.67 -2.53 16 23 C -0.14 -3.78 5.85 -21.45 -0.13 -3.90 16 24 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 25 H 0.09 2.45 6.25 -2.39 -0.01 2.43 16 26 H 0.08 2.98 5.73 -2.38 -0.01 2.97 16 27 H 0.40 16.14 7.37 -92.71 -0.68 15.46 16 28 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H 0.00 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 31 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 32 H 0.19 -0.03 8.06 -2.92 -0.02 -0.05 16 33 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -73.44 303.35 2.91 -70.53 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.49 Total: 12.10 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 3.36 Total: -7.04 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -2.32 Total: -90.94 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.06 Total: -29.75 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.67 Total: -2.53 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -1.26 Total: 3.04 kcal Total: -73.44 2.91 -70.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334407060.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.746 kcal (2) G-P(sol) polarization free energy of solvation -73.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds