Wall clock time and date at job start Tue Mar 31 2020 06:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35958 * 126.96088 * 2 1 4 4 C 1.46816 * 125.14659 * 359.93300 * 3 2 1 5 5 O 1.21712 * 119.99500 * 355.87998 * 4 3 2 6 6 N 1.34775 * 120.00146 * 175.87111 * 4 3 2 7 7 C 1.46493 * 119.99871 * 4.51721 * 6 4 3 8 8 C 1.36782 * 119.99460 * 184.51351 * 6 4 3 9 9 H 1.08003 * 120.00778 * 330.40982 * 8 6 4 10 10 C 1.39081 * 119.99639 * 150.41212 * 8 6 4 11 11 N 1.31355 * 119.99953 * 159.88721 * 10 8 6 12 12 Si 1.86799 * 119.99765 * 339.88544 * 10 8 6 13 13 H 1.48498 * 109.47201 * 92.93794 * 12 10 8 14 14 H 1.48503 * 109.46989 * 212.93871 * 12 10 8 15 15 H 1.48496 * 109.47217 * 332.93173 * 12 10 8 16 16 O 1.34945 * 109.71244 * 179.97438 * 3 2 1 17 17 C 1.34757 * 110.86009 * 359.97438 * 16 3 2 18 18 C 1.40740 * 107.61468 * 0.02562 * 17 16 3 19 19 C 1.39716 * 120.08969 * 180.02562 * 18 17 16 20 20 C 1.36647 * 119.73422 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.45045 * 0.02562 * 20 19 18 22 22 C 1.37954 * 120.72980 * 359.75709 * 21 20 19 23 23 Cl 1.73596 * 120.07699 * 180.02562 * 22 21 20 24 24 H 1.08992 * 109.47334 * 270.03037 * 1 2 3 25 25 H 1.09000 * 109.47121 * 30.03459 * 1 2 3 26 26 H 1.09001 * 109.46508 * 150.02621 * 1 2 3 27 27 H 1.09005 * 109.47624 * 54.87112 * 7 6 4 28 28 H 1.09003 * 109.46967 * 174.86415 * 7 6 4 29 29 H 1.09000 * 109.47424 * 294.86611 * 7 6 4 30 30 H 0.97005 * 119.99629 * 180.02562 * 11 10 8 31 31 H 1.08006 * 120.13615 * 180.02562 * 19 18 17 32 32 H 1.07999 * 119.77576 * 179.97438 * 20 19 18 33 33 H 1.07997 * 119.63002 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3245 1.0864 0.0000 4 6 1.8734 2.4835 -0.0014 5 8 0.6860 2.7395 -0.0784 6 7 2.7741 3.4825 0.0828 7 6 4.2073 3.1791 0.0759 8 6 2.3500 4.7797 0.1746 9 1 1.4144 5.0753 -0.2769 10 6 3.1236 5.7181 0.8493 11 7 2.9508 6.9997 0.6187 12 14 4.4083 5.1559 2.0833 13 1 5.7217 5.0207 1.4036 14 1 4.5168 6.1563 3.1754 15 1 4.0078 3.8440 2.6519 16 8 3.6132 0.6862 0.0006 17 6 3.6981 -0.6587 0.0015 18 6 2.3862 -1.1682 0.0010 19 6 2.1709 -2.5487 0.0023 20 6 3.2389 -3.4012 0.0036 21 6 4.5351 -2.9048 0.0041 22 6 4.7694 -1.5454 -0.0017 23 17 6.3975 -0.9431 -0.0016 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8897 -0.5144 26 1 -0.3632 -0.8903 -0.5134 27 1 4.4496 2.5894 -0.8082 28 1 4.7755 4.1092 0.0590 29 1 4.4632 2.6132 0.9716 30 1 3.4907 7.6542 1.0891 31 1 1.1645 -2.9405 0.0015 32 1 3.0733 -4.4684 0.0050 33 1 5.3694 -3.5906 0.0056 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334445776.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:23 Heat of formation + Delta-G solvation = 2.014403 kcal Electronic energy + Delta-G solvation = -21077.854191 eV Core-core repulsion = 17710.683984 eV Total energy + Delta-G solvation = -3367.170207 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.36176 -38.78325 -37.88435 -36.51193 -35.27751 -33.40129 -32.28356 -30.40343 -29.90388 -27.51873 -26.68361 -25.40188 -23.30352 -22.72055 -20.44029 -19.49808 -17.53366 -17.35390 -16.86833 -16.34113 -16.03418 -15.69619 -14.99588 -14.46785 -14.36251 -13.91541 -13.56820 -13.03340 -12.87546 -12.71764 -12.67837 -12.61222 -12.31171 -12.20233 -11.83170 -11.77673 -11.57438 -11.29142 -10.94296 -10.71677 -10.49724 -10.02752 -9.60641 -9.38678 -8.90799 -8.67335 -8.12304 -7.89319 -6.63080 -4.09237 0.59890 1.19558 1.99579 2.01530 2.72372 2.96242 3.13478 3.16669 3.49909 3.89563 3.95866 4.09638 4.58657 4.63132 4.79496 4.90954 5.04813 5.10494 5.31684 5.43409 5.55903 5.82453 5.86211 6.00193 6.00974 6.05639 6.06083 6.17942 6.31930 6.35771 6.48765 6.68768 7.07262 7.31918 7.99807 8.26443 8.68558 9.06052 9.48625 10.46684 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.005944 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.004280 B = 4709.599262 C = 5989.325708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.130 4.130 3 C 0.020 3.980 4 C 0.511 3.489 5 O -0.545 6.545 6 N -0.434 5.434 7 C 0.052 3.948 8 C -0.312 4.312 9 H 0.119 0.881 10 C 0.059 3.941 11 N -0.845 5.845 12 Si 0.882 3.118 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.262 1.262 16 O -0.171 6.171 17 C 0.057 3.943 18 C -0.112 4.112 19 C -0.063 4.063 20 C -0.131 4.131 21 C -0.091 4.091 22 C -0.024 4.024 23 Cl -0.062 7.062 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.280 0.720 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.392 -18.901 -0.393 19.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.133 4.133 3 C -0.031 4.031 4 C 0.300 3.700 5 O -0.429 6.429 6 N -0.152 5.152 7 C -0.092 4.092 8 C -0.439 4.439 9 H 0.137 0.863 10 C -0.149 4.149 11 N -0.479 5.479 12 Si 0.709 3.291 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.186 1.186 16 O -0.072 6.072 17 C 0.007 3.993 18 C -0.113 4.113 19 C -0.081 4.081 20 C -0.150 4.150 21 C -0.110 4.110 22 C -0.051 4.051 23 Cl -0.033 7.033 24 H 0.087 0.913 25 H 0.113 0.887 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.255 -18.235 -0.397 18.729 hybrid contribution 1.098 -0.194 0.722 1.329 sum 5.353 -18.430 0.326 19.194 Atomic orbital electron populations 1.20309 0.87578 1.03450 1.02565 1.21157 0.96966 0.88707 1.06502 1.22804 0.79700 0.96328 1.04268 1.16460 0.86110 0.80511 0.86942 1.90704 1.14990 1.80916 1.56327 1.43677 1.04139 1.06572 1.60780 1.22201 0.83423 1.01752 1.01779 1.19301 1.09761 0.80563 1.34250 0.86310 1.25391 0.97811 0.94834 0.96886 1.69699 1.39074 1.00731 1.38429 0.86963 0.81023 0.79523 0.81604 1.19756 1.21026 1.18581 1.84383 1.28237 1.19086 1.75493 1.19344 0.94089 0.82768 1.03086 1.19788 0.91645 0.94385 1.05499 1.20406 0.99858 0.90316 0.97556 1.20646 0.91261 1.00092 1.02956 1.20810 0.98311 0.91514 1.00371 1.19706 0.83639 0.91694 1.10076 1.98378 1.19561 1.88355 1.97029 0.91304 0.88651 0.92224 0.91516 0.89763 0.92501 0.90957 0.84944 0.84602 0.84070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 9.86 36.01 0.36 -0.94 16 2 C -0.13 -2.32 6.39 -102.24 -0.65 -2.97 16 3 C 0.02 0.40 6.80 -36.93 -0.25 0.15 16 4 C 0.51 12.39 7.59 -12.79 -0.10 12.30 16 5 O -0.55 -14.34 14.35 5.18 0.07 -14.26 16 6 N -0.43 -10.83 2.73 -123.65 -0.34 -11.17 16 7 C 0.05 1.10 6.73 59.84 0.40 1.50 16 8 C -0.31 -8.66 9.58 -15.03 -0.14 -8.81 16 9 H 0.12 3.65 7.70 -52.48 -0.40 3.24 16 10 C 0.06 1.59 5.20 -17.44 -0.09 1.50 16 11 N -0.84 -23.46 13.95 55.50 0.77 -22.68 16 12 Si 0.88 20.18 24.36 -169.99 -4.14 16.04 16 13 H -0.27 -5.77 6.66 56.52 0.38 -5.40 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.26 -6.03 6.70 56.52 0.38 -5.66 16 16 O -0.17 -3.28 7.23 2.66 0.02 -3.26 16 17 C 0.06 0.94 7.20 -38.33 -0.28 0.67 16 18 C -0.11 -1.75 6.37 -105.20 -0.67 -2.42 16 19 C -0.06 -0.74 10.06 -39.60 -0.40 -1.14 16 20 C -0.13 -1.28 9.98 -39.95 -0.40 -1.68 16 21 C -0.09 -0.98 9.80 -39.48 -0.39 -1.36 16 22 C -0.02 -0.33 6.33 -39.38 -0.25 -0.58 16 23 Cl -0.06 -0.83 28.96 -51.86 -1.50 -2.33 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.09 1.71 6.30 -51.93 -0.33 1.39 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.29 7.12 -51.93 -0.37 0.92 16 28 H 0.08 1.80 4.56 -51.93 -0.24 1.57 16 29 H 0.06 1.17 6.41 -51.93 -0.33 0.83 16 30 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 32 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 33 H 0.14 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 294.78 15.07 4.44 4.44 Total: -1.00 -30.00 294.78 -6.49 -36.50 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -2.97 Total: 0.51 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -2.86 Total: -3.79 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.44 Total: -33.85 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.09 Total: -17.52 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.14 Total: 16.04 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.00 -6.49 -36.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334445776.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.512 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds