Wall clock time and date at job start Tue Mar 31 2020 06:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35958 * 126.96088 * 2 1 4 4 C 1.46816 * 125.14659 * 359.93300 * 3 2 1 5 5 O 1.21712 * 119.99500 * 355.87998 * 4 3 2 6 6 N 1.34775 * 120.00146 * 175.87111 * 4 3 2 7 7 C 1.46493 * 119.99871 * 4.51721 * 6 4 3 8 8 C 1.36782 * 119.99460 * 184.51351 * 6 4 3 9 9 H 1.08003 * 120.00778 * 330.40982 * 8 6 4 10 10 C 1.39081 * 119.99639 * 150.41212 * 8 6 4 11 11 N 1.31355 * 119.99953 * 159.88721 * 10 8 6 12 12 Si 1.86799 * 119.99765 * 339.88544 * 10 8 6 13 13 H 1.48498 * 109.47201 * 92.93794 * 12 10 8 14 14 H 1.48503 * 109.46989 * 212.93871 * 12 10 8 15 15 H 1.48496 * 109.47217 * 332.93173 * 12 10 8 16 16 O 1.34945 * 109.71244 * 179.97438 * 3 2 1 17 17 C 1.34757 * 110.86009 * 359.97438 * 16 3 2 18 18 C 1.40740 * 107.61468 * 0.02562 * 17 16 3 19 19 C 1.39716 * 120.08969 * 180.02562 * 18 17 16 20 20 C 1.36647 * 119.73422 * 359.97438 * 19 18 17 21 21 C 1.38797 * 120.45045 * 0.02562 * 20 19 18 22 22 C 1.37954 * 120.72980 * 359.75709 * 21 20 19 23 23 Cl 1.73596 * 120.07699 * 180.02562 * 22 21 20 24 24 H 1.08992 * 109.47334 * 270.03037 * 1 2 3 25 25 H 1.09000 * 109.47121 * 30.03459 * 1 2 3 26 26 H 1.09001 * 109.46508 * 150.02621 * 1 2 3 27 27 H 1.09005 * 109.47624 * 54.87112 * 7 6 4 28 28 H 1.09003 * 109.46967 * 174.86415 * 7 6 4 29 29 H 1.09000 * 109.47424 * 294.86611 * 7 6 4 30 30 H 0.97005 * 119.99629 * 180.02562 * 11 10 8 31 31 H 1.08006 * 120.13615 * 180.02562 * 19 18 17 32 32 H 1.07999 * 119.77576 * 179.97438 * 20 19 18 33 33 H 1.07997 * 119.63002 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3245 1.0864 0.0000 4 6 1.8734 2.4835 -0.0014 5 8 0.6860 2.7395 -0.0784 6 7 2.7741 3.4825 0.0828 7 6 4.2073 3.1791 0.0759 8 6 2.3500 4.7797 0.1746 9 1 1.4144 5.0753 -0.2769 10 6 3.1236 5.7181 0.8493 11 7 2.9508 6.9997 0.6187 12 14 4.4083 5.1559 2.0833 13 1 5.7217 5.0207 1.4036 14 1 4.5168 6.1563 3.1754 15 1 4.0078 3.8440 2.6519 16 8 3.6132 0.6862 0.0006 17 6 3.6981 -0.6587 0.0015 18 6 2.3862 -1.1682 0.0010 19 6 2.1709 -2.5487 0.0023 20 6 3.2389 -3.4012 0.0036 21 6 4.5351 -2.9048 0.0041 22 6 4.7694 -1.5454 -0.0017 23 17 6.3975 -0.9431 -0.0016 24 1 -0.3633 0.0005 1.0276 25 1 -0.3633 0.8897 -0.5144 26 1 -0.3632 -0.8903 -0.5134 27 1 4.4496 2.5894 -0.8082 28 1 4.7755 4.1092 0.0590 29 1 4.4632 2.6132 0.9716 30 1 3.4907 7.6542 1.0891 31 1 1.1645 -2.9405 0.0015 32 1 3.0733 -4.4684 0.0050 33 1 5.3694 -3.5906 0.0056 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334445776.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:23 Heat of formation + Delta-G solvation = -16.879236 kcal Electronic energy + Delta-G solvation = -21078.673480 eV Core-core repulsion = 17710.683984 eV Total energy + Delta-G solvation = -3367.989497 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.64136 -40.53076 -39.02181 -37.52795 -37.13150 -34.76351 -34.28103 -31.42609 -31.06263 -28.99135 -28.46903 -27.07668 -24.66036 -23.83098 -21.78710 -20.95514 -19.33674 -18.92237 -18.17785 -17.82542 -17.49270 -17.15068 -16.29964 -16.02095 -15.68359 -15.47717 -14.83301 -14.63209 -14.45723 -14.31910 -14.02563 -13.98167 -13.86893 -13.56276 -13.25190 -12.94947 -12.66126 -12.54172 -12.36869 -12.26603 -11.99118 -11.89177 -11.30753 -10.81268 -10.74813 -10.02237 -9.76202 -9.17056 -8.65909 -6.22187 -0.54566 0.17603 0.68649 1.00249 1.15352 1.27406 1.36605 1.43096 2.05812 2.09380 2.43489 2.53847 2.85867 3.31042 3.50872 3.76928 3.89010 4.12366 4.17981 4.19981 4.28048 4.35553 4.45346 4.60627 4.76742 4.83562 4.93967 4.98687 5.17470 5.30118 5.33632 5.39523 5.55353 5.84369 5.90294 6.33627 6.67421 7.04883 7.55334 8.49528 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.018429 B = 0.005944 C = 0.004674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.004280 B = 4709.599262 C = 5989.325708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.101 4.101 3 C -0.034 4.034 4 C 0.518 3.482 5 O -0.579 6.579 6 N -0.455 5.455 7 C 0.059 3.941 8 C -0.340 4.340 9 H 0.066 0.934 10 C 0.021 3.979 11 N -0.891 5.891 12 Si 0.945 3.055 13 H -0.240 1.240 14 H -0.277 1.277 15 H -0.266 1.266 16 O -0.186 6.186 17 C 0.038 3.962 18 C -0.136 4.136 19 C -0.053 4.053 20 C -0.115 4.115 21 C -0.065 4.065 22 C -0.049 4.049 23 Cl -0.065 7.065 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.100 0.900 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.287 0.713 31 H 0.165 0.835 32 H 0.186 0.814 33 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.979 -24.265 0.297 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 C -0.083 4.083 4 C 0.308 3.692 5 O -0.466 6.466 6 N -0.173 5.173 7 C -0.083 4.083 8 C -0.467 4.467 9 H 0.084 0.916 10 C -0.184 4.184 11 N -0.527 5.527 12 Si 0.767 3.233 13 H -0.164 1.164 14 H -0.204 1.204 15 H -0.190 1.190 16 O -0.088 6.088 17 C -0.011 4.011 18 C -0.137 4.137 19 C -0.071 4.071 20 C -0.133 4.133 21 C -0.083 4.083 22 C -0.076 4.076 23 Cl -0.036 7.036 24 H 0.097 0.903 25 H 0.084 0.916 26 H 0.119 0.881 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.183 0.817 32 H 0.203 0.797 33 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.857 -23.610 0.278 24.327 hybrid contribution 0.514 1.019 0.418 1.216 sum 6.371 -22.590 0.696 23.482 Atomic orbital electron populations 1.20396 0.86399 1.03998 1.03302 1.21645 0.97878 0.89185 1.01725 1.21941 0.81409 0.94758 1.10213 1.16971 0.85725 0.82163 0.84339 1.90659 1.16505 1.82522 1.56875 1.43683 1.05666 1.05621 1.62351 1.22221 0.81314 1.01822 1.02963 1.18867 1.08939 0.82726 1.36210 0.91625 1.26061 0.99971 0.94483 0.97839 1.69782 1.41095 1.01927 1.39896 0.85984 0.79604 0.78658 0.79039 1.16410 1.20352 1.19036 1.84259 1.27084 1.20901 1.76528 1.19882 0.95783 0.81839 1.03619 1.19928 0.90341 0.95524 1.07897 1.20896 1.02385 0.88393 0.95414 1.21245 0.89859 1.02233 0.99956 1.21432 1.00272 0.90415 0.96205 1.20040 0.83112 0.92514 1.11919 1.98377 1.19390 1.88660 1.97140 0.90283 0.91620 0.88092 0.90063 0.89973 0.91541 0.90288 0.81727 0.79702 0.80514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.56 9.86 71.24 0.70 -1.86 16 2 C -0.10 -3.51 6.39 -18.32 -0.12 -3.63 16 3 C -0.03 -1.42 6.80 23.99 0.16 -1.25 16 4 C 0.52 26.63 7.59 86.49 0.66 27.29 16 5 O -0.58 -32.76 14.35 -4.39 -0.06 -32.82 16 6 N -0.46 -23.99 2.73 -663.33 -1.81 -25.80 16 7 C 0.06 2.56 6.73 127.77 0.86 3.42 16 8 C -0.34 -20.38 9.58 84.12 0.81 -19.58 16 9 H 0.07 4.49 7.70 -2.91 -0.02 4.47 16 10 C 0.02 1.19 5.20 84.97 0.44 1.63 16 11 N -0.89 -52.19 13.95 21.69 0.30 -51.88 16 12 Si 0.94 42.45 24.36 68.60 1.67 44.12 16 13 H -0.24 -9.51 6.66 99.48 0.66 -8.85 16 14 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.27 -12.03 6.70 99.48 0.67 -11.37 16 16 O -0.19 -7.10 7.23 -13.39 -0.10 -7.20 16 17 C 0.04 1.18 7.20 23.08 0.17 1.34 16 18 C -0.14 -3.83 6.37 -20.24 -0.13 -3.96 16 19 C -0.05 -0.94 10.06 22.25 0.22 -0.71 16 20 C -0.12 -1.43 9.98 22.03 0.22 -1.21 16 21 C -0.06 -1.01 9.80 22.34 0.22 -0.79 16 22 C -0.05 -1.19 6.33 22.40 0.14 -1.05 16 23 Cl -0.06 -1.56 28.96 -2.72 -0.08 -1.64 16 24 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.06 2.42 6.30 -2.39 -0.02 2.41 16 26 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.08 3.21 7.12 -2.38 -0.02 3.20 16 28 H 0.08 3.54 4.56 -2.39 -0.01 3.53 16 29 H 0.07 2.73 6.41 -2.39 -0.02 2.71 16 30 H 0.29 15.24 8.31 -92.70 -0.77 14.47 16 31 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 32 H 0.19 0.66 8.06 -2.91 -0.02 0.64 16 33 H 0.18 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -73.33 294.78 5.35 -67.98 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 1.08 Total: 7.61 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: 4.35 Total: -0.36 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -1.51 Total: -77.68 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.16 Total: -40.02 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 1.67 Total: 44.12 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.64 kcal Total: -73.33 5.35 -67.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334445776.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.100 kcal (2) G-P(sol) polarization free energy of solvation -73.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds