Wall clock time and date at job start Tue Mar 31 2020 06:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86795 * 120.00243 * 2 1 4 4 H 1.48502 * 109.47203 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47041 * 120.00250 * 3 2 1 6 6 H 1.48492 * 109.47534 * 240.00024 * 3 2 1 7 7 C 1.39930 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99888 * 206.09323 * 7 2 1 9 9 C 1.41039 * 119.99981 * 26.08651 * 7 2 1 10 10 C 1.40725 * 120.30865 * 25.51079 * 9 7 2 11 11 C 1.36453 * 119.95342 * 179.97438 * 10 9 7 12 12 C 1.38894 * 120.59501 * 0.02562 * 11 10 9 13 13 C 1.38162 * 120.63025 * 359.97438 * 12 11 10 14 14 C 1.38754 * 120.02465 * 359.71987 * 13 12 11 15 15 N 1.38730 * 120.29627 * 180.27641 * 14 13 12 16 16 S 1.65599 * 119.99806 * 35.48738 * 15 14 13 17 17 O 1.42098 * 106.40286 * 173.55001 * 16 15 14 18 18 O 1.42103 * 106.40405 * 306.46420 * 16 15 14 19 19 C 1.76194 * 107.22071 * 60.00823 * 16 15 14 20 20 C 1.41386 * 126.58095 * 90.00247 * 19 16 15 21 21 C 1.34506 * 106.84225 * 179.97438 * 20 19 16 22 22 O 1.34298 * 108.42086 * 359.97438 * 21 20 19 23 23 C 1.34297 * 109.47916 * 359.77226 * 22 21 20 24 24 H 0.97003 * 120.00452 * 185.90672 * 1 2 3 25 25 H 1.07998 * 120.02350 * 359.97438 * 10 9 7 26 26 H 1.08003 * 119.69763 * 180.02562 * 11 10 9 27 27 H 1.08008 * 119.68598 * 179.97438 * 12 11 10 28 28 H 1.08002 * 119.99115 * 179.97438 * 13 12 11 29 29 H 0.96998 * 119.99925 * 215.48990 * 15 14 13 30 30 H 1.08000 * 126.57354 * 359.97438 * 20 19 16 31 31 H 1.08006 * 125.79098 * 180.02562 * 21 20 19 32 32 H 1.08000 * 125.79236 * 180.23887 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 1.2779 2.7464 0.0006 5 1 3.0966 1.6962 1.2125 6 1 3.0965 1.6964 -1.2124 7 6 2.0084 -1.2119 -0.0005 8 1 3.0059 -1.2597 0.4108 9 6 1.4109 -2.3708 -0.5382 10 6 0.4081 -2.2629 -1.5196 11 6 -0.1646 -3.3889 -2.0351 12 6 0.2323 -4.6468 -1.5998 13 6 1.2145 -4.7810 -0.6375 14 6 1.8188 -3.6535 -0.1001 15 7 2.8097 -3.7820 0.8623 16 16 3.8775 -5.0456 0.7878 17 8 4.8434 -4.8151 1.8042 18 8 3.0943 -6.2290 0.7139 19 6 4.7311 -4.9172 -0.7482 20 6 5.9339 -4.2136 -0.9875 21 6 6.2297 -4.3788 -2.2892 22 8 5.2756 -5.1412 -2.8477 23 6 4.3671 -5.4751 -1.9168 24 1 -0.4851 -0.8356 0.0864 25 1 0.0921 -1.2894 -1.8645 26 1 -0.9336 -3.3013 -2.7885 27 1 -0.2312 -5.5283 -2.0176 28 1 1.5149 -5.7641 -0.3062 29 1 2.8770 -3.1317 1.5789 30 1 6.5055 -3.6515 -0.2638 31 1 7.0892 -3.9687 -2.7986 32 1 3.4911 -6.0856 -2.0794 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334451095.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:54 Heat of formation + Delta-G solvation = -42.589259 kcal Electronic energy + Delta-G solvation = -21390.614361 eV Core-core repulsion = 18023.553701 eV Total energy + Delta-G solvation = -3367.060661 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.56845 -38.34043 -36.81260 -35.51770 -34.29631 -33.82417 -33.12937 -29.67687 -29.45182 -28.15519 -25.14360 -22.55746 -21.70874 -21.43752 -21.01102 -19.05583 -18.32222 -18.00280 -16.99997 -16.49805 -15.95801 -15.63700 -14.94645 -14.74160 -14.39880 -14.26876 -13.79759 -13.05813 -12.88872 -12.71881 -12.62344 -12.21027 -12.07898 -11.78805 -11.57104 -11.45498 -11.15690 -11.05296 -10.76791 -10.49500 -10.36320 -10.16885 -9.81847 -9.45354 -9.08478 -8.77954 -7.79483 -7.51390 -7.15995 -4.56283 0.79225 1.55816 2.27357 2.63657 2.66032 3.03987 3.08227 3.17730 3.27739 3.54727 3.90823 4.10493 4.41595 4.48974 4.83139 5.20786 5.30461 5.39038 5.75007 5.99591 6.02518 6.09454 6.22698 6.33742 6.60499 6.77895 6.86814 6.87810 7.19357 7.32644 7.59435 7.67020 7.77462 7.85556 7.99429 8.16968 8.58554 8.71139 9.90490 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.006788 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.971275 B = 4123.791119 C = 4555.672346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.040 3.960 3 Si 1.062 2.938 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.515 4.515 8 H 0.079 0.921 9 C 0.094 3.906 10 C -0.202 4.202 11 C -0.092 4.092 12 C -0.232 4.232 13 C -0.129 4.129 14 C 0.016 3.984 15 N -1.019 6.019 16 S 2.708 3.292 17 O -0.973 6.973 18 O -0.963 6.963 19 C -0.754 4.754 20 C -0.134 4.134 21 C -0.053 4.053 22 O -0.171 6.171 23 C 0.110 3.890 24 H 0.301 0.699 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.096 0.904 28 H 0.132 0.868 29 H 0.420 0.580 30 H 0.160 0.840 31 H 0.208 0.792 32 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.505 -4.358 -3.282 9.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.183 4.183 3 Si 0.885 3.115 4 H -0.198 1.198 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.543 4.543 8 H 0.097 0.903 9 C 0.088 3.912 10 C -0.222 4.222 11 C -0.112 4.112 12 C -0.252 4.252 13 C -0.150 4.150 14 C -0.081 4.081 15 N -0.771 5.771 16 S 2.799 3.201 17 O -0.963 6.963 18 O -0.953 6.953 19 C -0.840 4.840 20 C -0.153 4.153 21 C -0.120 4.120 22 O -0.064 6.064 23 C 0.037 3.963 24 H 0.115 0.885 25 H 0.126 0.874 26 H 0.109 0.891 27 H 0.114 0.886 28 H 0.150 0.850 29 H 0.258 0.742 30 H 0.177 0.823 31 H 0.225 0.775 32 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 7.476 -3.579 -3.116 8.855 hybrid contribution 0.344 -0.858 -0.194 0.944 sum 7.820 -4.436 -3.310 9.581 Atomic orbital electron populations 1.70476 1.08209 1.34475 1.27891 1.27016 0.95626 1.04321 0.91342 0.83674 0.75764 0.73928 0.78128 1.19770 1.19971 1.19974 1.20411 1.03360 0.94117 1.36428 0.90342 1.17548 0.92034 0.91165 0.90481 1.20820 1.03017 0.97497 1.00893 1.20436 0.98641 0.93177 0.98905 1.20187 1.03919 0.96003 1.05086 1.21351 0.97262 0.97356 0.99059 1.17175 0.98451 0.94396 0.98049 1.52239 1.41481 1.47492 1.35882 1.01721 0.72251 0.73570 0.72608 1.93519 1.61341 1.85704 1.55786 1.93502 1.68820 1.46234 1.86751 1.32106 1.12842 1.16555 1.22517 1.21376 0.95529 1.01593 0.96839 1.24136 0.94850 0.99339 0.93646 1.84064 1.29996 1.53532 1.38783 1.24133 0.92126 0.95183 0.84808 0.88532 0.87389 0.89050 0.88595 0.85012 0.74234 0.82269 0.77513 0.76422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.61 12.32 55.55 0.68 -18.92 16 2 C 0.04 0.95 4.92 -17.33 -0.09 0.86 16 3 Si 1.06 20.36 30.00 -169.99 -5.10 15.26 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 6 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.51 -12.46 8.34 -37.89 -0.32 -12.77 16 8 H 0.08 1.83 7.39 -52.48 -0.39 1.44 16 9 C 0.09 2.27 5.31 -106.64 -0.57 1.70 16 10 C -0.20 -4.78 7.92 -39.29 -0.31 -5.09 16 11 C -0.09 -1.98 9.96 -39.98 -0.40 -2.38 16 12 C -0.23 -4.78 10.03 -39.37 -0.40 -5.17 16 13 C -0.13 -2.72 9.26 -39.42 -0.36 -3.08 16 14 C 0.02 0.36 6.26 -83.29 -0.52 -0.16 16 15 N -1.02 -20.14 5.35 32.72 0.17 -19.96 16 16 S 2.71 49.42 5.66 -107.50 -0.61 48.81 16 17 O -0.97 -19.19 17.90 -57.17 -1.02 -20.22 16 18 O -0.96 -18.71 14.83 -57.17 -0.85 -19.56 16 19 C -0.75 -12.63 6.05 -39.70 -0.24 -12.87 16 20 C -0.13 -2.01 10.75 -39.70 -0.43 -2.44 16 21 C -0.05 -0.68 12.09 29.41 0.36 -0.33 16 22 O -0.17 -2.47 10.65 5.74 0.06 -2.41 16 23 C 0.11 1.69 11.85 29.42 0.35 2.04 16 24 H 0.30 7.68 6.76 -40.82 -0.28 7.41 16 25 H 0.11 2.64 6.52 -52.49 -0.34 2.30 16 26 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 27 H 0.10 1.73 8.06 -52.48 -0.42 1.31 16 28 H 0.13 2.65 5.18 -52.49 -0.27 2.38 16 29 H 0.42 7.93 8.09 -34.47 -0.28 7.65 16 30 H 0.16 2.13 8.06 -52.49 -0.42 1.70 16 31 H 0.21 1.71 8.06 -52.48 -0.42 1.29 16 32 H 0.22 2.85 8.06 -52.49 -0.42 2.43 16 LS Contribution 295.00 15.07 4.45 4.45 Total: -1.00 -29.61 295.00 -7.60 -37.21 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -2.47 Total: 15.04 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: -2.92 Total: -39.69 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.86 Total: -38.89 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -1.81 Total: -42.19 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.10 Total: 15.26 kcal Atomic # 16 Polarization: 49.42 SS G_CDS: -0.61 Total: 48.81 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.61 -7.60 -37.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334451095.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.382 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds