Wall clock time and date at job start Tue Mar 31 2020 06:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86795 * 120.00243 * 2 1 4 4 H 1.48502 * 109.47203 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47041 * 120.00250 * 3 2 1 6 6 H 1.48492 * 109.47534 * 240.00024 * 3 2 1 7 7 C 1.39930 * 119.99844 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99888 * 206.09323 * 7 2 1 9 9 C 1.41039 * 119.99981 * 26.08651 * 7 2 1 10 10 C 1.40725 * 120.30865 * 25.51079 * 9 7 2 11 11 C 1.36453 * 119.95342 * 179.97438 * 10 9 7 12 12 C 1.38894 * 120.59501 * 0.02562 * 11 10 9 13 13 C 1.38162 * 120.63025 * 359.97438 * 12 11 10 14 14 C 1.38754 * 120.02465 * 359.71987 * 13 12 11 15 15 N 1.38730 * 120.29627 * 180.27641 * 14 13 12 16 16 S 1.65599 * 119.99806 * 35.48738 * 15 14 13 17 17 O 1.42098 * 106.40286 * 173.55001 * 16 15 14 18 18 O 1.42103 * 106.40405 * 306.46420 * 16 15 14 19 19 C 1.76194 * 107.22071 * 60.00823 * 16 15 14 20 20 C 1.41386 * 126.58095 * 90.00247 * 19 16 15 21 21 C 1.34506 * 106.84225 * 179.97438 * 20 19 16 22 22 O 1.34298 * 108.42086 * 359.97438 * 21 20 19 23 23 C 1.34297 * 109.47916 * 359.77226 * 22 21 20 24 24 H 0.97003 * 120.00452 * 185.90672 * 1 2 3 25 25 H 1.07998 * 120.02350 * 359.97438 * 10 9 7 26 26 H 1.08003 * 119.69763 * 180.02562 * 11 10 9 27 27 H 1.08008 * 119.68598 * 179.97438 * 12 11 10 28 28 H 1.08002 * 119.99115 * 179.97438 * 13 12 11 29 29 H 0.96998 * 119.99925 * 215.48990 * 15 14 13 30 30 H 1.08000 * 126.57354 * 359.97438 * 20 19 16 31 31 H 1.08006 * 125.79098 * 180.02562 * 21 20 19 32 32 H 1.08000 * 125.79236 * 180.23887 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 1.2779 2.7464 0.0006 5 1 3.0966 1.6962 1.2125 6 1 3.0965 1.6964 -1.2124 7 6 2.0084 -1.2119 -0.0005 8 1 3.0059 -1.2597 0.4108 9 6 1.4109 -2.3708 -0.5382 10 6 0.4081 -2.2629 -1.5196 11 6 -0.1646 -3.3889 -2.0351 12 6 0.2323 -4.6468 -1.5998 13 6 1.2145 -4.7810 -0.6375 14 6 1.8188 -3.6535 -0.1001 15 7 2.8097 -3.7820 0.8623 16 16 3.8775 -5.0456 0.7878 17 8 4.8434 -4.8151 1.8042 18 8 3.0943 -6.2290 0.7139 19 6 4.7311 -4.9172 -0.7482 20 6 5.9339 -4.2136 -0.9875 21 6 6.2297 -4.3788 -2.2892 22 8 5.2756 -5.1412 -2.8477 23 6 4.3671 -5.4751 -1.9168 24 1 -0.4851 -0.8356 0.0864 25 1 0.0921 -1.2894 -1.8645 26 1 -0.9336 -3.3013 -2.7885 27 1 -0.2312 -5.5283 -2.0176 28 1 1.5149 -5.7641 -0.3062 29 1 2.8770 -3.1317 1.5789 30 1 6.5055 -3.6515 -0.2638 31 1 7.0892 -3.9687 -2.7986 32 1 3.4911 -6.0856 -2.0794 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334451095.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:54 Heat of formation + Delta-G solvation = -61.990320 kcal Electronic energy + Delta-G solvation = -21391.455655 eV Core-core repulsion = 18023.553701 eV Total energy + Delta-G solvation = -3367.901954 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.69989 -40.05106 -38.36393 -37.06315 -35.99545 -35.51255 -34.29832 -31.24815 -30.76006 -29.84840 -26.91145 -23.82596 -23.17681 -22.82594 -22.66401 -20.41322 -19.93236 -19.45534 -18.55754 -18.09421 -17.12267 -16.93447 -16.62417 -16.29479 -15.92843 -15.50350 -15.40982 -14.71541 -14.36014 -14.02219 -13.90967 -13.85737 -13.75157 -13.33334 -13.20012 -13.07366 -12.74005 -12.48373 -12.39430 -11.98210 -11.86644 -11.54255 -11.51475 -11.14719 -10.82060 -9.88419 -9.55911 -9.31250 -8.89733 -6.38739 -0.67159 0.36321 0.90816 0.92102 1.14928 1.52225 1.64174 1.78884 1.92415 2.13236 2.32957 2.64749 2.68541 3.16974 3.52193 3.78402 3.94931 4.34245 4.39540 4.46292 4.50285 4.65124 4.87855 4.96284 5.04513 5.13867 5.25884 5.45041 5.61836 5.75333 5.78711 5.87702 6.05355 6.17405 6.23078 6.43076 6.81280 6.94867 8.06452 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.006788 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.971275 B = 4123.791119 C = 4555.672346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.007 3.993 3 Si 1.108 2.892 4 H -0.275 1.275 5 H -0.258 1.258 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.078 0.922 9 C 0.067 3.933 10 C -0.220 4.220 11 C -0.098 4.098 12 C -0.220 4.220 13 C -0.138 4.138 14 C 0.020 3.980 15 N -1.026 6.026 16 S 2.731 3.269 17 O -0.988 6.988 18 O -0.976 6.976 19 C -0.774 4.774 20 C -0.166 4.166 21 C -0.032 4.032 22 O -0.171 6.171 23 C 0.107 3.893 24 H 0.286 0.714 25 H 0.091 0.909 26 H 0.116 0.884 27 H 0.129 0.871 28 H 0.145 0.855 29 H 0.421 0.579 30 H 0.169 0.831 31 H 0.255 0.745 32 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.730 -5.054 -4.456 11.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.210 4.210 3 Si 0.926 3.074 4 H -0.200 1.200 5 H -0.183 1.183 6 H -0.190 1.190 7 C -0.572 4.572 8 H 0.097 0.903 9 C 0.061 3.939 10 C -0.241 4.241 11 C -0.117 4.117 12 C -0.240 4.240 13 C -0.159 4.159 14 C -0.077 4.077 15 N -0.776 5.776 16 S 2.824 3.176 17 O -0.979 6.979 18 O -0.966 6.966 19 C -0.864 4.864 20 C -0.186 4.186 21 C -0.099 4.099 22 O -0.063 6.063 23 C 0.034 3.966 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.134 0.866 27 H 0.147 0.853 28 H 0.162 0.838 29 H 0.258 0.742 30 H 0.187 0.813 31 H 0.271 0.729 32 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 8.674 -4.287 -4.267 10.575 hybrid contribution 0.023 -0.842 0.115 0.850 sum 8.698 -5.129 -4.152 10.918 Atomic orbital electron populations 1.70583 1.08940 1.33392 1.30764 1.28225 0.95640 1.07169 0.90006 0.83101 0.74893 0.70370 0.79035 1.19964 1.18277 1.19022 1.20546 1.03654 0.94934 1.38043 0.90348 1.17836 0.92786 0.92112 0.91126 1.20828 1.03960 0.97650 1.01642 1.20717 0.98909 0.92826 0.99218 1.20606 1.02773 0.96804 1.03833 1.21590 0.97469 0.97514 0.99345 1.17308 0.98562 0.94138 0.97682 1.52316 1.42063 1.47551 1.35712 1.00679 0.71650 0.72564 0.72751 1.93499 1.61541 1.85832 1.57026 1.93469 1.69351 1.46593 1.87219 1.31844 1.14025 1.18572 1.21959 1.21689 0.95618 1.02867 0.98421 1.25010 0.94765 0.97069 0.93028 1.84097 1.30113 1.53554 1.38579 1.24485 0.92690 0.94960 0.84459 0.90201 0.89099 0.86603 0.85306 0.83792 0.74216 0.81332 0.72918 0.74777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.80 12.32 21.83 0.27 -41.53 16 2 C 0.01 0.33 4.92 85.25 0.42 0.75 16 3 Si 1.11 41.21 30.00 68.60 2.06 43.27 16 4 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 6 H -0.27 -9.39 7.11 99.48 0.71 -8.68 16 7 C -0.54 -26.85 8.34 23.37 0.19 -26.66 16 8 H 0.08 3.73 7.39 -2.91 -0.02 3.71 16 9 C 0.07 3.29 5.31 -21.17 -0.11 3.18 16 10 C -0.22 -10.57 7.92 22.46 0.18 -10.40 16 11 C -0.10 -4.07 9.96 22.01 0.22 -3.85 16 12 C -0.22 -8.57 10.03 22.41 0.22 -8.35 16 13 C -0.14 -5.61 9.26 22.38 0.21 -5.41 16 14 C 0.02 0.89 6.26 38.99 0.24 1.13 16 15 N -1.03 -40.57 5.35 -50.39 -0.27 -40.83 16 16 S 2.73 97.87 5.66 -56.49 -0.32 97.55 16 17 O -0.99 -38.56 17.90 -128.00 -2.29 -40.85 16 18 O -0.98 -36.87 14.83 -128.00 -1.90 -38.77 16 19 C -0.77 -24.87 6.05 22.19 0.13 -24.74 16 20 C -0.17 -4.68 10.75 22.19 0.24 -4.44 16 21 C -0.03 -0.73 12.09 66.97 0.81 0.08 16 22 O -0.17 -4.46 10.65 -2.38 -0.03 -4.48 16 23 C 0.11 3.07 11.85 66.97 0.79 3.86 16 24 H 0.29 15.24 6.76 -92.71 -0.63 14.62 16 25 H 0.09 4.60 6.52 -2.91 -0.02 4.58 16 26 H 0.12 4.17 8.06 -2.91 -0.02 4.15 16 27 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 28 H 0.14 5.51 5.18 -2.91 -0.02 5.50 16 29 H 0.42 16.19 8.09 -96.75 -0.78 15.41 16 30 H 0.17 4.26 8.06 -2.91 -0.02 4.24 16 31 H 0.26 2.99 8.06 -2.91 -0.02 2.96 16 32 H 0.24 5.61 8.06 -2.91 -0.02 5.59 16 Total: -1.00 -63.55 295.00 1.61 -61.94 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: 0.54 Total: 38.55 kcal Atomic # 6 Polarization: -78.39 SS G_CDS: 3.55 Total: -74.83 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: 0.00 Total: -82.37 kcal Atomic # 8 Polarization: -79.90 SS G_CDS: -4.22 Total: -84.11 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.06 Total: 43.27 kcal Atomic # 16 Polarization: 97.87 SS G_CDS: -0.32 Total: 97.55 kcal Total: -63.55 1.61 -61.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334451095.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.048 kcal (2) G-P(sol) polarization free energy of solvation -63.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds