Wall clock time and date at job start Tue Mar 31 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36750 * 120.00142 * 2 1 4 4 H 1.08004 * 119.99796 * 174.23353 * 3 2 1 5 5 C 1.39085 * 120.00077 * 354.23881 * 3 2 1 6 6 N 1.31344 * 120.00100 * 5.10431 * 5 3 2 7 7 Si 1.86799 * 120.00145 * 185.10733 * 5 3 2 8 8 H 1.48503 * 109.47295 * 89.99631 * 7 5 3 9 9 H 1.48496 * 109.47465 * 210.00162 * 7 5 3 10 10 H 1.48498 * 109.46949 * 329.99906 * 7 5 3 11 11 C 1.34774 * 119.99606 * 180.02562 * 2 1 3 12 12 O 1.21781 * 120.00121 * 185.46407 * 11 2 1 13 13 C 1.41790 * 120.00435 * 5.46867 * 11 2 1 14 14 C 1.35755 * 120.15145 * 75.33897 * 13 11 2 15 15 C 1.47063 * 117.86085 * 180.88277 * 14 13 11 16 16 C 1.39477 * 121.47138 * 196.12381 * 15 14 13 17 17 C 1.38051 * 119.49675 * 179.66826 * 16 15 14 18 18 Cl 1.73596 * 119.84083 * 180.27462 * 17 16 15 19 19 C 1.38677 * 120.32234 * 0.29577 * 17 16 15 20 20 C 1.38262 * 120.62767 * 359.97438 * 19 17 16 21 21 C 1.38326 * 119.88071 * 359.97438 * 20 19 17 22 22 O 1.35592 * 121.29652 * 179.97438 * 21 20 19 23 23 C 1.43342 * 117.05502 * 145.44489 * 22 21 20 24 24 H 1.08992 * 109.47652 * 184.81488 * 1 2 3 25 25 H 1.09004 * 109.46601 * 304.81265 * 1 2 3 26 26 H 1.09000 * 109.47205 * 64.81081 * 1 2 3 27 27 H 0.96999 * 119.99790 * 180.02562 * 6 5 3 28 28 H 1.07999 * 121.06854 * 0.90439 * 14 13 11 29 29 H 1.08000 * 120.25119 * 359.95290 * 16 15 14 30 30 H 1.07999 * 119.68866 * 179.97438 * 19 17 16 31 31 H 1.08005 * 120.06175 * 180.02562 * 20 19 17 32 32 H 1.09007 * 109.66862 * 288.42833 * 23 22 21 33 33 H 1.09002 * 108.95983 * 168.82997 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1488 1.1843 0.0000 4 1 3.2247 1.1866 0.0940 5 6 1.4587 2.3858 -0.1209 6 7 0.1453 2.3903 -0.1342 7 14 2.3997 3.9930 -0.2645 8 1 2.6627 4.2865 -1.6963 9 1 1.5950 5.0923 0.3264 10 1 3.6896 3.8780 0.4622 11 6 2.1388 -1.1672 -0.0005 12 8 3.3525 -1.1698 0.0999 13 6 1.4347 -2.3923 -0.1181 14 6 0.9331 -2.7780 -1.3192 15 6 0.1945 -4.0482 -1.3796 16 6 -0.0643 -4.6830 -2.5943 17 6 -0.7555 -5.8779 -2.6032 18 17 -1.0762 -6.6792 -4.1093 19 6 -1.1954 -6.4411 -1.4147 20 6 -0.9489 -5.8170 -0.2058 21 6 -0.2569 -4.6196 -0.1769 22 8 0.0002 -3.9827 0.9922 23 6 1.2422 -3.2737 1.0890 24 1 -0.3634 -1.0239 0.0862 25 1 -0.3633 0.5867 0.8438 26 1 -0.3633 0.4374 -0.9299 27 1 -0.3359 3.2282 -0.2189 28 1 1.0723 -2.1716 -2.2020 29 1 0.2776 -4.2453 -3.5206 30 1 -1.7356 -7.3761 -1.4335 31 1 -1.2953 -6.2639 0.7144 32 1 2.0663 -3.9844 1.1533 33 1 1.2284 -2.6559 1.9869 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334739264.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:59 Heat of formation + Delta-G solvation = -31.984583 kcal Electronic energy + Delta-G solvation = -20639.378315 eV Core-core repulsion = 17270.733801 eV Total energy + Delta-G solvation = -3368.644514 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.97166 -40.46961 -38.77659 -37.18744 -36.84031 -35.33750 -33.57638 -31.80857 -31.28594 -28.44699 -27.17766 -26.79057 -24.89952 -23.73721 -22.07996 -19.71873 -19.10958 -18.99367 -18.33087 -17.41612 -17.37471 -16.61497 -16.10341 -16.01334 -15.80078 -15.45603 -14.92911 -14.70312 -14.46294 -14.25195 -13.76932 -13.69654 -13.62774 -12.99975 -12.85495 -12.84446 -12.78500 -12.49442 -12.24720 -12.13364 -11.99416 -11.76320 -11.11056 -11.02118 -10.54314 -10.01168 -9.70501 -8.97463 -8.34228 -5.99723 -0.52117 0.09861 0.96569 1.11239 1.32221 1.39773 1.52500 1.77397 2.19212 2.22434 2.60024 3.00460 3.01923 3.51956 3.58743 3.62089 3.93876 4.02638 4.13910 4.25145 4.29080 4.52100 4.56896 4.70840 4.80468 4.91757 5.07032 5.11210 5.24367 5.34340 5.36586 5.40477 5.48002 5.92839 6.15070 6.36561 7.04738 7.33543 7.87028 8.57390 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.025691 B = 0.003807 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.626528 B = 7353.113371 C = 7763.403003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.132 3.868 2 N -0.442 5.442 3 C -0.348 4.348 4 H 0.082 0.918 5 C 0.000 4.000 6 N -0.890 5.890 7 Si 0.997 3.003 8 H -0.270 1.270 9 H -0.267 1.267 10 H -0.272 1.272 11 C 0.463 3.537 12 O -0.639 6.639 13 C -0.177 4.177 14 C -0.064 4.064 15 C -0.129 4.129 16 C -0.063 4.063 17 C -0.068 4.068 18 Cl -0.062 7.062 19 C -0.062 4.062 20 C -0.125 4.125 21 C 0.118 3.882 22 O -0.308 6.308 23 C 0.124 3.876 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.275 0.725 28 H 0.132 0.868 29 H 0.147 0.853 30 H 0.173 0.827 31 H 0.170 0.830 32 H 0.091 0.909 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.518 -16.164 -3.086 18.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 N -0.158 5.158 3 C -0.475 4.475 4 H 0.100 0.900 5 C -0.202 4.202 6 N -0.529 5.529 7 Si 0.820 3.180 8 H -0.195 1.195 9 H -0.191 1.191 10 H -0.197 1.197 11 C 0.254 3.746 12 O -0.530 6.530 13 C -0.180 4.180 14 C -0.084 4.084 15 C -0.130 4.130 16 C -0.082 4.082 17 C -0.094 4.094 18 Cl -0.033 7.033 19 C -0.080 4.080 20 C -0.143 4.143 21 C 0.072 3.928 22 O -0.222 6.222 23 C 0.049 3.951 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.149 0.851 29 H 0.165 0.835 30 H 0.190 0.810 31 H 0.187 0.813 32 H 0.109 0.891 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.295 -16.027 -2.991 17.861 hybrid contribution 0.693 1.343 -0.428 1.570 sum -6.602 -14.684 -3.419 16.459 Atomic orbital electron populations 1.21610 0.78555 0.97834 1.03033 1.43991 1.07151 1.04897 1.59722 1.19824 0.93143 0.83850 1.50731 0.90021 1.26167 0.96753 1.02355 0.94933 1.70236 1.06723 1.28698 1.47257 0.84873 0.77936 0.76348 0.78831 1.19501 1.19129 1.19718 1.16924 0.87279 0.84369 0.86070 1.90643 1.15558 1.87918 1.58892 1.21433 1.01465 0.97437 0.97656 1.22102 0.94881 0.94851 0.96522 1.19017 1.04449 0.95909 0.93633 1.21050 0.96217 0.93542 0.97354 1.20826 1.04505 0.95785 0.88333 1.98370 1.94438 1.79075 1.31432 1.21320 0.97268 1.00641 0.88800 1.20797 1.01841 0.91501 1.00191 1.19549 0.96980 0.91992 0.84250 1.86102 1.39007 1.64304 1.32815 1.21655 0.84769 0.93055 0.95645 0.93290 0.91980 0.92844 0.91407 0.85066 0.83484 0.80986 0.81300 0.89139 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 6.22 8.59 127.77 1.10 7.32 16 2 N -0.44 -23.44 3.02 -668.89 -2.02 -25.45 16 3 C -0.35 -19.86 9.56 84.13 0.80 -19.05 16 4 H 0.08 4.97 7.17 -2.91 -0.02 4.95 16 5 C 0.00 0.00 5.46 84.97 0.46 0.46 16 6 N -0.89 -45.94 9.43 21.69 0.20 -45.73 16 7 Si 1.00 41.86 29.56 68.60 2.03 43.88 16 8 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 9 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 C 0.46 23.54 6.74 85.12 0.57 24.11 16 12 O -0.64 -37.47 16.67 -4.61 -0.08 -37.55 16 13 C -0.18 -7.03 3.69 -19.56 -0.07 -7.11 16 14 C -0.06 -2.26 9.15 24.01 0.22 -2.04 16 15 C -0.13 -3.72 5.80 -20.09 -0.12 -3.84 16 16 C -0.06 -1.51 9.63 22.52 0.22 -1.29 16 17 C -0.07 -1.37 6.32 22.33 0.14 -1.23 16 18 Cl -0.06 -1.12 28.94 -2.72 -0.08 -1.20 16 19 C -0.06 -1.04 9.80 22.38 0.22 -0.82 16 20 C -0.12 -2.42 10.01 22.30 0.22 -2.20 16 21 C 0.12 3.17 6.46 22.87 0.15 3.32 16 22 O -0.31 -9.20 10.43 -89.02 -0.93 -10.13 16 23 C 0.12 4.05 6.94 71.24 0.49 4.54 16 24 H 0.05 2.03 5.99 -2.39 -0.01 2.01 16 25 H 0.06 3.07 6.93 -2.39 -0.02 3.05 16 26 H 0.05 2.61 7.15 -2.39 -0.02 2.59 16 27 H 0.28 13.23 8.31 -92.71 -0.77 12.46 16 28 H 0.13 4.66 8.06 -2.91 -0.02 4.63 16 29 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 31 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 32 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 33 H 0.12 3.82 8.08 -2.39 -0.02 3.80 16 Total: -1.00 -66.25 301.53 4.69 -61.56 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 1.15 Total: 12.44 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: 4.41 Total: 2.18 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -1.81 Total: -71.19 kcal Atomic # 8 Polarization: -46.67 SS G_CDS: -1.01 Total: -47.68 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -66.25 4.69 -61.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334739264.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.574 kcal (2) G-P(sol) polarization free energy of solvation -66.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds