Wall clock time and date at job start Tue Mar 31 2020 06:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86803 * 119.99956 * 2 1 4 4 H 1.48498 * 109.47162 * 270.00174 * 3 2 1 5 5 H 1.48498 * 109.46983 * 30.00303 * 3 2 1 6 6 H 1.48501 * 109.46742 * 150.00320 * 3 2 1 7 7 C 1.39902 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00129 * 185.58313 * 7 2 1 9 9 C 1.41152 * 119.99527 * 5.57910 * 7 2 1 10 10 C 1.40899 * 120.15337 * 214.18320 * 9 7 2 11 11 C 1.36372 * 119.84406 * 180.02562 * 10 9 7 12 12 C 1.39469 * 120.18384 * 0.02631 * 11 10 9 13 13 N 1.39268 * 119.83754 * 180.27171 * 12 11 10 14 14 C 1.34777 * 120.00254 * 325.97179 * 13 12 11 15 15 O 1.21286 * 119.99635 * 354.22348 * 14 13 12 16 16 C 1.50695 * 120.00022 * 174.22231 * 14 13 12 17 17 C 1.53832 * 113.66030 * 279.00237 * 16 14 13 18 18 C 1.51775 * 86.68756 * 220.75994 * 17 16 14 19 19 O 1.20764 * 135.74789 * 205.15153 * 18 17 16 20 20 C 1.51572 * 88.46873 * 25.07785 * 18 17 16 21 21 C 1.39578 * 120.31886 * 359.97438 * 12 11 10 22 22 Cl 1.73599 * 119.92369 * 179.97438 * 21 12 11 23 23 C 1.36471 * 120.14798 * 359.97438 * 21 12 11 24 24 H 0.97000 * 119.99885 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.07698 * 0.02612 * 10 9 7 26 26 H 1.08001 * 119.90346 * 180.02562 * 11 10 9 27 27 H 0.96996 * 119.99730 * 145.97047 * 13 12 11 28 28 H 1.09001 * 112.87930 * 50.33450 * 16 14 13 29 29 H 1.09004 * 113.66674 * 335.18989 * 17 16 14 30 30 H 1.09001 * 113.66836 * 106.26247 * 17 16 14 31 31 H 1.09000 * 113.66633 * 220.45913 * 20 18 17 32 32 H 1.09009 * 113.67061 * 89.38875 * 20 18 17 33 33 H 1.08001 * 120.09354 * 179.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4902 2.0465 -1.4000 5 1 1.4402 2.6526 0.7001 6 1 3.5403 1.4401 0.7000 7 6 2.0083 -1.2116 -0.0005 8 1 3.0844 -1.2138 0.0904 9 6 1.3074 -2.4310 -0.1199 10 6 1.7691 -3.5812 0.5502 11 6 1.0874 -4.7562 0.4300 12 6 -0.0640 -4.8218 -0.3542 13 7 -0.7577 -6.0241 -0.4674 14 6 -0.0866 -7.1928 -0.4591 15 8 1.1263 -7.1955 -0.4589 16 6 -0.8431 -8.4961 -0.4501 17 6 -1.3439 -8.9096 0.9444 18 6 -0.9356 -10.3239 0.5748 19 8 -1.2664 -11.4356 0.9113 20 6 0.0651 -9.7368 -0.4004 21 6 -0.5278 -3.6868 -1.0213 22 17 -1.9618 -3.7802 -1.9953 23 6 0.1435 -2.5039 -0.9094 24 1 -0.4850 0.8401 0.0004 25 1 2.6608 -3.5324 1.1576 26 1 1.4402 -5.6383 0.9436 27 1 -1.7240 -6.0203 -0.5521 28 1 -1.6101 -8.5462 -1.2230 29 1 -0.7611 -8.4856 1.7621 30 1 -2.4183 -8.7841 1.0784 31 1 0.1221 -10.2755 -1.3463 32 1 1.0440 -9.5451 0.0393 33 1 -0.2159 -1.6263 -1.4263 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335038524.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:35 Heat of formation + Delta-G solvation = -37.606184 kcal Electronic energy + Delta-G solvation = -20130.598642 eV Core-core repulsion = 16761.710358 eV Total energy + Delta-G solvation = -3368.888285 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.73015 -39.26889 -37.68401 -35.97418 -35.60482 -34.54981 -33.08821 -29.56320 -29.28251 -26.42138 -26.22696 -24.33845 -21.91607 -20.96548 -19.84379 -19.13635 -17.73111 -17.36845 -16.67885 -16.09129 -15.57514 -15.41865 -15.04071 -14.68276 -14.33318 -13.66013 -13.45371 -13.13788 -12.92325 -12.69945 -12.53414 -12.32647 -11.88678 -11.60688 -11.40473 -11.34943 -11.20895 -11.02276 -10.53895 -10.41339 -10.18609 -9.95614 -9.69716 -9.57554 -9.36664 -8.97588 -7.65782 -7.12677 -6.84508 -4.52302 1.60405 2.24337 2.72434 2.87616 3.02301 3.04988 3.06212 3.13677 3.48182 3.66924 3.85382 4.13109 4.46839 4.48063 4.71974 4.96134 5.07972 5.29713 5.35903 5.38920 5.56546 5.81176 6.05046 6.43020 6.52749 6.78414 6.89630 7.05717 7.19997 7.21262 7.42812 7.55411 7.76160 7.98279 8.00738 8.34017 8.53616 8.68521 8.72471 10.10039 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.030158 B = 0.003668 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.206066 B = 7631.152819 C = 8261.342282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.071 3.929 3 Si 0.916 3.084 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.457 4.457 8 H 0.082 0.918 9 C 0.115 3.885 10 C -0.202 4.202 11 C -0.070 4.070 12 C 0.009 3.991 13 N -0.645 5.645 14 C 0.515 3.485 15 O -0.527 6.527 16 C -0.128 4.128 17 C -0.177 4.177 18 C 0.362 3.638 19 O -0.428 6.428 20 C -0.167 4.167 21 C -0.018 4.018 22 Cl -0.119 7.119 23 C -0.134 4.134 24 H 0.283 0.717 25 H 0.104 0.896 26 H 0.112 0.888 27 H 0.399 0.601 28 H 0.120 0.880 29 H 0.124 0.876 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.107 -9.192 -0.524 10.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.487 4.487 8 H 0.101 0.899 9 C 0.112 3.888 10 C -0.223 4.223 11 C -0.091 4.091 12 C -0.084 4.084 13 N -0.288 5.288 14 C 0.301 3.699 15 O -0.403 6.403 16 C -0.149 4.149 17 C -0.215 4.215 18 C 0.236 3.764 19 O -0.299 6.299 20 C -0.205 4.205 21 C -0.046 4.046 22 Cl -0.090 7.090 23 C -0.154 4.154 24 H 0.094 0.906 25 H 0.122 0.878 26 H 0.130 0.870 27 H 0.234 0.766 28 H 0.138 0.862 29 H 0.142 0.858 30 H 0.120 0.880 31 H 0.116 0.884 32 H 0.151 0.849 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.760 -9.655 -0.404 10.370 hybrid contribution -0.437 1.031 -0.221 1.141 sum -4.197 -8.624 -0.625 9.612 Atomic orbital electron populations 1.69760 1.07369 1.29466 1.35995 1.25924 0.94961 1.01387 0.92299 0.86176 0.80269 0.80192 0.79326 1.19272 1.20201 1.18564 1.19535 0.95226 0.89916 1.44009 0.89948 1.17568 0.90778 0.92497 0.87979 1.20880 1.02915 0.93573 1.04891 1.20217 0.94236 0.97585 0.97015 1.16826 0.99757 0.84010 1.07856 1.42951 1.10030 1.04477 1.71327 1.19986 0.88034 0.84528 0.77306 1.90706 1.13565 1.87032 1.49044 1.22363 0.99923 0.93334 0.99303 1.24040 1.04323 0.95505 0.97619 1.25688 0.81746 0.88997 0.79985 1.90428 1.58284 1.25618 1.55563 1.23936 1.00858 0.94191 1.01498 1.20392 0.90280 0.95770 0.98178 1.98256 1.40804 1.98642 1.71344 1.20948 0.98035 0.94904 1.01560 0.90639 0.87802 0.87014 0.76590 0.86186 0.85847 0.88049 0.88392 0.84920 0.84876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.60 10.95 55.55 0.61 -18.99 16 2 C 0.07 1.70 5.31 -17.34 -0.09 1.60 16 3 Si 0.92 17.86 29.56 -169.99 -5.03 12.83 16 4 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 5 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.46 -11.38 9.03 -37.85 -0.34 -11.72 16 8 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 9 C 0.11 2.87 5.51 -106.80 -0.59 2.28 16 10 C -0.20 -4.69 9.74 -39.25 -0.38 -5.07 16 11 C -0.07 -1.53 8.58 -39.80 -0.34 -1.87 16 12 C 0.01 0.19 6.28 -83.52 -0.52 -0.34 16 13 N -0.64 -10.38 5.03 -9.71 -0.05 -10.42 16 14 C 0.52 7.70 7.07 -10.99 -0.08 7.63 16 15 O -0.53 -9.84 13.63 5.55 0.08 -9.77 16 16 C -0.13 -1.27 4.17 -90.99 -0.38 -1.65 16 17 C -0.18 -1.54 7.62 -26.92 -0.21 -1.74 16 18 C 0.36 3.69 9.14 -28.16 -0.26 3.44 16 19 O -0.43 -5.72 17.99 6.00 0.11 -5.62 16 20 C -0.17 -1.61 7.37 -27.02 -0.20 -1.81 16 21 C -0.02 -0.39 6.30 -39.72 -0.25 -0.64 16 22 Cl -0.12 -2.17 27.90 -51.86 -1.45 -3.62 16 23 C -0.13 -3.25 8.33 -39.24 -0.33 -3.58 16 24 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 25 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 26 H 0.11 2.32 6.45 -52.49 -0.34 1.98 16 27 H 0.40 5.41 8.02 -40.82 -0.33 5.08 16 28 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.12 1.09 8.09 -51.93 -0.42 0.67 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.13 1.39 7.45 -51.92 -0.39 1.01 16 33 H 0.13 3.38 6.45 -52.49 -0.34 3.04 16 LS Contribution 305.90 15.07 4.61 4.61 Total: -1.00 -28.29 305.90 -8.13 -36.42 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -3.05 Total: 8.02 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: -3.96 Total: -13.47 kcal Atomic # 7 Polarization: -29.97 SS G_CDS: 0.56 Total: -29.41 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: 0.18 Total: -15.38 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -1.45 Total: -3.62 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.29 -8.13 -36.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335038524.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.185 kcal (2) G-P(sol) polarization free energy of solvation -28.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds