Wall clock time and date at job start Tue Mar 31 2020 06:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86803 * 119.99956 * 2 1 4 4 H 1.48498 * 109.47162 * 270.00174 * 3 2 1 5 5 H 1.48498 * 109.46983 * 30.00303 * 3 2 1 6 6 H 1.48501 * 109.46742 * 150.00320 * 3 2 1 7 7 C 1.39902 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00129 * 185.58313 * 7 2 1 9 9 C 1.41152 * 119.99527 * 5.57910 * 7 2 1 10 10 C 1.40899 * 120.15337 * 214.18320 * 9 7 2 11 11 C 1.36372 * 119.84406 * 180.02562 * 10 9 7 12 12 C 1.39469 * 120.18384 * 0.02631 * 11 10 9 13 13 N 1.39268 * 119.83754 * 180.27171 * 12 11 10 14 14 C 1.34777 * 120.00254 * 325.97179 * 13 12 11 15 15 O 1.21286 * 119.99635 * 354.22348 * 14 13 12 16 16 C 1.50695 * 120.00022 * 174.22231 * 14 13 12 17 17 C 1.53832 * 113.66030 * 279.00237 * 16 14 13 18 18 C 1.51775 * 86.68756 * 220.75994 * 17 16 14 19 19 O 1.20764 * 135.74789 * 205.15153 * 18 17 16 20 20 C 1.51572 * 88.46873 * 25.07785 * 18 17 16 21 21 C 1.39578 * 120.31886 * 359.97438 * 12 11 10 22 22 Cl 1.73599 * 119.92369 * 179.97438 * 21 12 11 23 23 C 1.36471 * 120.14798 * 359.97438 * 21 12 11 24 24 H 0.97000 * 119.99885 * 359.97438 * 1 2 3 25 25 H 1.08001 * 120.07698 * 0.02612 * 10 9 7 26 26 H 1.08001 * 119.90346 * 180.02562 * 11 10 9 27 27 H 0.96996 * 119.99730 * 145.97047 * 13 12 11 28 28 H 1.09001 * 112.87930 * 50.33450 * 16 14 13 29 29 H 1.09004 * 113.66674 * 335.18989 * 17 16 14 30 30 H 1.09001 * 113.66836 * 106.26247 * 17 16 14 31 31 H 1.09000 * 113.66633 * 220.45913 * 20 18 17 32 32 H 1.09009 * 113.67061 * 89.38875 * 20 18 17 33 33 H 1.08001 * 120.09354 * 179.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4902 2.0465 -1.4000 5 1 1.4402 2.6526 0.7001 6 1 3.5403 1.4401 0.7000 7 6 2.0083 -1.2116 -0.0005 8 1 3.0844 -1.2138 0.0904 9 6 1.3074 -2.4310 -0.1199 10 6 1.7691 -3.5812 0.5502 11 6 1.0874 -4.7562 0.4300 12 6 -0.0640 -4.8218 -0.3542 13 7 -0.7577 -6.0241 -0.4674 14 6 -0.0866 -7.1928 -0.4591 15 8 1.1263 -7.1955 -0.4589 16 6 -0.8431 -8.4961 -0.4501 17 6 -1.3439 -8.9096 0.9444 18 6 -0.9356 -10.3239 0.5748 19 8 -1.2664 -11.4356 0.9113 20 6 0.0651 -9.7368 -0.4004 21 6 -0.5278 -3.6868 -1.0213 22 17 -1.9618 -3.7802 -1.9953 23 6 0.1435 -2.5039 -0.9094 24 1 -0.4850 0.8401 0.0004 25 1 2.6608 -3.5324 1.1576 26 1 1.4402 -5.6383 0.9436 27 1 -1.7240 -6.0203 -0.5521 28 1 -1.6101 -8.5462 -1.2230 29 1 -0.7611 -8.4856 1.7621 30 1 -2.4183 -8.7841 1.0784 31 1 0.1221 -10.2755 -1.3463 32 1 1.0440 -9.5451 0.0393 33 1 -0.2159 -1.6263 -1.4263 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335038524.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:34 Heat of formation + Delta-G solvation = -53.386058 kcal Electronic energy + Delta-G solvation = -20131.282909 eV Core-core repulsion = 16761.710358 eV Total energy + Delta-G solvation = -3369.572551 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.81080 -40.48609 -39.20292 -37.22898 -36.99109 -36.08493 -34.74173 -31.31787 -30.97889 -27.71603 -27.09090 -25.73748 -23.55770 -22.61697 -21.17267 -19.99109 -19.39003 -18.67251 -18.09581 -17.16132 -16.90951 -16.61172 -16.15393 -16.03329 -15.86640 -15.14710 -14.80823 -14.62807 -14.36397 -13.99857 -13.81904 -13.59886 -13.38568 -13.03495 -12.85238 -12.67656 -12.39586 -12.19722 -12.13250 -12.01501 -11.87974 -11.55723 -11.22756 -10.89406 -10.57146 -10.46468 -9.41127 -8.83233 -8.59333 -6.36612 0.60488 0.79526 0.94127 1.39031 1.42268 1.44377 1.54623 1.72772 2.23307 2.27416 2.71854 2.81163 3.29624 3.55836 3.69722 3.84465 4.09447 4.22181 4.31914 4.58154 4.69020 4.74634 4.86595 4.88831 4.99503 5.06791 5.22087 5.27606 5.44409 5.68551 5.85113 6.01043 6.21393 6.40530 6.51198 6.63441 6.85368 6.89733 7.30476 8.36914 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.030158 B = 0.003668 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.206066 B = 7631.152819 C = 8261.342282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.034 3.966 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.493 4.493 8 H 0.080 0.920 9 C 0.085 3.915 10 C -0.212 4.212 11 C -0.078 4.078 12 C 0.027 3.973 13 N -0.642 5.642 14 C 0.518 3.482 15 O -0.564 6.564 16 C -0.117 4.117 17 C -0.166 4.166 18 C 0.371 3.629 19 O -0.461 6.461 20 C -0.167 4.167 21 C -0.027 4.027 22 Cl -0.087 7.087 23 C -0.152 4.152 24 H 0.288 0.712 25 H 0.109 0.891 26 H 0.121 0.879 27 H 0.415 0.585 28 H 0.154 0.846 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.113 0.887 32 H 0.124 0.876 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.223 -10.108 -0.790 11.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.523 4.523 8 H 0.098 0.902 9 C 0.082 3.918 10 C -0.233 4.233 11 C -0.098 4.098 12 C -0.068 4.068 13 N -0.287 5.287 14 C 0.307 3.693 15 O -0.442 6.442 16 C -0.138 4.138 17 C -0.204 4.204 18 C 0.247 3.753 19 O -0.335 6.335 20 C -0.205 4.205 21 C -0.056 4.056 22 Cl -0.058 7.058 23 C -0.172 4.172 24 H 0.099 0.901 25 H 0.127 0.873 26 H 0.139 0.861 27 H 0.252 0.748 28 H 0.172 0.828 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.905 -10.599 -0.676 11.698 hybrid contribution -0.155 1.126 -0.177 1.150 sum -5.060 -9.473 -0.853 10.774 Atomic orbital electron populations 1.69819 1.08600 1.30495 1.36896 1.26690 0.95690 1.04233 0.91408 0.85151 0.78919 0.75985 0.79375 1.18844 1.19416 1.18320 1.19746 0.95335 0.90995 1.46227 0.90216 1.17853 0.91720 0.93249 0.88948 1.21045 1.03374 0.93848 1.04987 1.20369 0.94699 0.97319 0.97397 1.16907 0.98943 0.85370 1.05582 1.42977 1.10736 1.03415 1.71573 1.20828 0.87798 0.85429 0.75265 1.90702 1.15618 1.87657 1.50251 1.22413 1.00154 0.89930 1.01303 1.24034 1.05976 0.93708 0.96667 1.25768 0.81193 0.88911 0.79390 1.90429 1.59387 1.26990 1.56671 1.23964 1.00309 0.93999 1.02191 1.20443 0.91277 0.95366 0.98503 1.98253 1.38659 1.98561 1.70342 1.20839 0.98755 0.95361 1.02268 0.90141 0.87339 0.86077 0.74777 0.82843 0.85762 0.85456 0.86875 0.85843 0.86656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.68 10.95 21.82 0.24 -41.45 16 2 C 0.03 1.63 5.31 85.24 0.45 2.09 16 3 Si 0.98 37.02 29.56 68.60 2.03 39.05 16 4 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 5 H -0.27 -9.70 7.11 99.48 0.71 -9.00 16 6 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 7 C -0.49 -25.41 9.03 23.39 0.21 -25.20 16 8 H 0.08 3.96 7.85 -2.91 -0.02 3.94 16 9 C 0.09 4.39 5.51 -21.28 -0.12 4.27 16 10 C -0.21 -10.06 9.74 22.49 0.22 -9.84 16 11 C -0.08 -3.35 8.58 22.13 0.19 -3.16 16 12 C 0.03 1.07 6.28 38.58 0.24 1.31 16 13 N -0.64 -19.09 5.03 -303.02 -1.52 -20.61 16 14 C 0.52 14.17 7.07 87.66 0.62 14.79 16 15 O -0.56 -20.21 13.63 -3.05 -0.04 -20.25 16 16 C -0.12 -1.90 4.17 -11.03 -0.05 -1.95 16 17 C -0.17 -2.29 7.62 30.47 0.23 -2.06 16 18 C 0.37 6.60 9.14 29.67 0.27 6.87 16 19 O -0.46 -11.51 17.99 -1.46 -0.03 -11.54 16 20 C -0.17 -2.76 7.37 30.41 0.22 -2.54 16 21 C -0.03 -1.18 6.30 22.18 0.14 -1.04 16 22 Cl -0.09 -3.03 27.90 -2.72 -0.08 -3.10 16 23 C -0.15 -7.52 8.33 22.49 0.19 -7.34 16 24 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 25 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 26 H 0.12 4.95 6.45 -2.91 -0.02 4.93 16 27 H 0.41 9.85 8.02 -92.71 -0.74 9.11 16 28 H 0.15 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.12 1.81 8.09 -2.39 -0.02 1.79 16 30 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.12 2.38 7.45 -2.38 -0.02 2.36 16 33 H 0.12 6.06 6.45 -2.91 -0.02 6.05 16 Total: -1.00 -62.67 305.90 3.85 -58.81 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 0.43 Total: 22.90 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 2.83 Total: -23.81 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: -1.29 Total: -62.06 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.07 Total: -31.79 kcal Atomic # 14 Polarization: 37.02 SS G_CDS: 2.03 Total: 39.05 kcal Atomic # 17 Polarization: -3.03 SS G_CDS: -0.08 Total: -3.10 kcal Total: -62.67 3.85 -58.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335038524.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.428 kcal (2) G-P(sol) polarization free energy of solvation -62.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds