Wall clock time and date at job start Tue Mar 31 2020 06:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.46254 * 126.95524 * 2 1 4 4 C 1.39706 * 134.17742 * 0.29846 * 3 2 1 5 5 C 1.36712 * 119.70250 * 180.20642 * 4 3 2 6 6 Cl 1.73599 * 119.79569 * 179.73630 * 5 4 3 7 7 C 1.38947 * 120.41372 * 359.45498 * 5 4 3 8 8 C 1.37783 * 120.73115 * 0.28120 * 7 5 4 9 9 C 1.39024 * 119.87349 * 359.97438 * 8 7 5 10 10 O 1.34740 * 133.22859 * 179.97438 * 9 8 7 11 11 C 1.34943 * 110.86157 * 180.02562 * 10 9 8 12 12 C 1.46980 * 125.13197 * 179.97438 * 11 10 9 13 13 O 1.21655 * 120.00111 * 180.02562 * 12 11 10 14 14 N 1.34783 * 119.99945 * 0.02562 * 12 11 10 15 15 C 1.46497 * 119.99823 * 180.02562 * 14 12 11 16 16 C 1.50707 * 109.46655 * 179.97438 * 15 14 12 17 17 H 1.07992 * 120.00174 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99644 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99907 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99820 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47268 * 59.99885 * 20 18 16 22 22 H 1.48501 * 109.47009 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47076 * 300.00027 * 20 18 16 24 24 H 1.08994 * 109.47338 * 270.02248 * 1 2 3 25 25 H 1.09003 * 109.47506 * 30.03035 * 1 2 3 26 26 H 1.09005 * 109.47357 * 150.02304 * 1 2 3 27 27 H 1.07998 * 120.15005 * 359.94738 * 4 3 2 28 28 H 1.07993 * 119.63337 * 180.29850 * 7 5 4 29 29 H 1.08004 * 120.06642 * 180.02562 * 8 7 5 30 30 H 0.97000 * 119.99922 * 0.02562 * 14 12 11 31 31 H 1.09000 * 109.46936 * 299.99206 * 15 14 12 32 32 H 1.08999 * 109.47328 * 59.99999 * 15 14 12 33 33 H 0.96999 * 119.99794 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3862 1.1687 0.0000 4 6 2.1709 2.5491 0.0052 5 6 3.2397 3.4014 -0.0008 6 17 2.9749 5.1171 -0.0013 7 6 4.5368 2.9032 -0.0007 8 6 4.7693 1.5451 -0.0004 9 6 3.6980 0.6591 0.0005 10 8 3.6125 -0.6856 0.0005 11 6 2.3235 -1.0851 0.0009 12 6 1.8716 -2.4837 0.0006 13 8 0.6820 -2.7385 0.0006 14 7 2.7750 -3.4839 0.0003 15 6 2.3245 -4.8779 -0.0006 16 6 3.5221 -5.7927 -0.0013 17 1 4.5189 -5.3774 -0.0007 18 6 3.3450 -7.1601 -0.0017 19 7 2.1310 -7.6659 -0.0019 20 14 4.8294 -8.2942 -0.0019 21 1 5.6477 -8.0387 1.2107 22 1 4.3727 -9.7072 -0.0030 23 1 5.6477 -8.0380 -1.2143 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8897 -0.5143 26 1 -0.3634 -0.8902 -0.5135 27 1 1.1646 2.9411 0.0098 28 1 5.3719 3.5879 -0.0007 29 1 5.7820 1.1695 0.0001 30 1 3.7235 -3.2807 0.0007 31 1 1.7237 -5.0661 0.8892 32 1 1.7241 -5.0651 -0.8908 33 1 2.0064 -8.6279 -0.0026 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335944918.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:25 Heat of formation + Delta-G solvation = -26.128624 kcal Electronic energy + Delta-G solvation = -19898.018792 eV Core-core repulsion = 16529.628212 eV Total energy + Delta-G solvation = -3368.390580 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.64286 -38.98226 -38.26392 -36.51956 -34.66230 -33.78777 -32.44635 -30.75329 -30.11402 -28.12947 -26.90262 -24.37666 -22.96227 -22.44585 -20.61385 -20.05825 -18.37927 -17.32785 -16.84224 -16.49464 -16.09083 -15.27142 -15.11347 -14.41477 -14.37773 -14.35142 -13.98890 -13.49254 -13.15179 -13.06657 -12.90526 -12.58959 -12.12741 -12.05384 -11.96212 -11.58439 -11.45467 -11.09181 -11.06120 -10.92171 -10.39257 -10.11885 -9.56279 -9.48048 -8.84317 -8.76182 -8.40641 -8.00789 -6.22761 -4.30227 0.40244 0.87567 1.77150 1.78462 2.44774 3.22965 3.25467 3.27758 3.29184 3.55033 3.71109 4.25747 4.29229 4.44771 4.63197 4.80827 4.90987 5.12325 5.13787 5.21886 5.40516 5.59305 5.75262 5.81120 5.81857 5.91269 6.04637 6.12647 6.38449 6.81526 7.13044 7.21585 7.38496 7.56843 7.86919 8.40020 8.59092 8.83800 9.36001 10.87354 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.032823 B = 0.003036 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.854907 B = 9219.557476 C =10051.964606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.098 4.098 3 C -0.125 4.125 4 C -0.051 4.051 5 C -0.056 4.056 6 Cl -0.068 7.068 7 C -0.083 4.083 8 C -0.093 4.093 9 C 0.070 3.930 10 O -0.177 6.177 11 C -0.007 4.007 12 C 0.578 3.422 13 O -0.524 6.524 14 N -0.691 5.691 15 C 0.248 3.752 16 C -0.547 4.547 17 H 0.064 0.936 18 C 0.065 3.935 19 N -0.885 5.885 20 Si 0.906 3.094 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.076 0.924 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.398 0.602 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.212 22.421 -0.008 22.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.127 4.127 4 C -0.070 4.070 5 C -0.082 4.082 6 Cl -0.039 7.039 7 C -0.102 4.102 8 C -0.111 4.111 9 C 0.021 3.979 10 O -0.078 6.078 11 C -0.058 4.058 12 C 0.361 3.639 13 O -0.403 6.403 14 N -0.338 5.338 15 C 0.128 3.872 16 C -0.585 4.585 17 H 0.082 0.918 18 C -0.139 4.139 19 N -0.522 5.522 20 Si 0.733 3.267 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.200 1.200 24 H 0.094 0.906 25 H 0.084 0.916 26 H 0.114 0.886 27 H 0.157 0.843 28 H 0.163 0.837 29 H 0.163 0.837 30 H 0.231 0.769 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.466 21.938 -0.009 22.076 hybrid contribution 1.227 -0.318 0.017 1.267 sum 3.693 21.619 0.008 21.932 Atomic orbital electron populations 1.20424 0.87275 1.03882 1.03137 1.21300 0.97165 0.88896 1.02712 1.19667 0.92820 0.93491 1.06693 1.20120 0.99042 0.90049 0.97793 1.20313 0.94519 0.85002 1.08388 1.98371 1.96877 1.11517 1.97172 1.20797 0.95625 0.94227 0.99568 1.19911 0.97363 0.90188 1.03664 1.19782 0.95305 0.81737 1.01032 1.84099 1.27712 1.20233 1.75709 1.22461 0.80298 0.95876 1.07121 1.16739 0.86505 0.81365 0.79317 1.90819 1.15343 1.81999 1.52169 1.46514 1.09164 1.08388 1.69730 1.19275 0.96244 0.73450 0.98270 1.21159 0.92370 0.91223 1.53782 0.91768 1.24937 0.96397 0.98029 0.94503 1.69953 1.20703 1.13008 1.48527 0.86439 0.82130 0.79384 0.78786 1.19988 1.21004 1.19993 0.90560 0.91625 0.88617 0.84275 0.83667 0.83699 0.76855 0.94862 0.94868 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 9.81 36.00 0.35 -0.84 16 2 C -0.10 -1.46 6.39 -102.28 -0.65 -2.12 16 3 C -0.13 -1.66 6.37 -105.19 -0.67 -2.33 16 4 C -0.05 -0.55 9.82 -39.59 -0.39 -0.94 16 5 C -0.06 -0.54 6.28 -39.87 -0.25 -0.79 16 6 Cl -0.07 -0.59 28.93 -51.86 -1.50 -2.09 16 7 C -0.08 -0.74 9.79 -39.49 -0.39 -1.12 16 8 C -0.09 -0.94 10.07 -39.46 -0.40 -1.33 16 9 C 0.07 0.94 7.41 -38.35 -0.28 0.66 16 10 O -0.18 -2.75 10.28 2.71 0.03 -2.73 16 11 C -0.01 -0.13 7.07 -36.91 -0.26 -0.39 16 12 C 0.58 11.72 7.80 -12.72 -0.10 11.62 16 13 O -0.52 -11.83 14.62 5.23 0.08 -11.75 16 14 N -0.69 -14.70 5.54 -62.70 -0.35 -15.05 16 15 C 0.25 6.39 5.43 -5.19 -0.03 6.36 16 16 C -0.55 -14.61 9.28 -34.43 -0.32 -14.93 16 17 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 18 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 19 N -0.88 -25.51 13.29 55.43 0.74 -24.77 16 20 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 24 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.10 1.45 6.37 -51.93 -0.33 1.12 16 27 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 28 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 29 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 30 H 0.40 7.58 8.04 -40.82 -0.33 7.26 16 31 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 311.53 15.07 4.69 4.69 Total: -1.00 -29.81 311.53 -7.97 -37.78 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -3.15 Total: 2.85 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -3.48 Total: -4.48 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.39 Total: -39.83 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.10 Total: -14.48 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.81 -7.97 -37.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335944918.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.651 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds