Wall clock time and date at job start Tue Mar 31 2020 06:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.46254 * 126.95524 * 2 1 4 4 C 1.39706 * 134.17742 * 0.29846 * 3 2 1 5 5 C 1.36712 * 119.70250 * 180.20642 * 4 3 2 6 6 Cl 1.73599 * 119.79569 * 179.73630 * 5 4 3 7 7 C 1.38947 * 120.41372 * 359.45498 * 5 4 3 8 8 C 1.37783 * 120.73115 * 0.28120 * 7 5 4 9 9 C 1.39024 * 119.87349 * 359.97438 * 8 7 5 10 10 O 1.34740 * 133.22859 * 179.97438 * 9 8 7 11 11 C 1.34943 * 110.86157 * 180.02562 * 10 9 8 12 12 C 1.46980 * 125.13197 * 179.97438 * 11 10 9 13 13 O 1.21655 * 120.00111 * 180.02562 * 12 11 10 14 14 N 1.34783 * 119.99945 * 0.02562 * 12 11 10 15 15 C 1.46497 * 119.99823 * 180.02562 * 14 12 11 16 16 C 1.50707 * 109.46655 * 179.97438 * 15 14 12 17 17 H 1.07992 * 120.00174 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99644 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99907 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99820 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47268 * 59.99885 * 20 18 16 22 22 H 1.48501 * 109.47009 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47076 * 300.00027 * 20 18 16 24 24 H 1.08994 * 109.47338 * 270.02248 * 1 2 3 25 25 H 1.09003 * 109.47506 * 30.03035 * 1 2 3 26 26 H 1.09005 * 109.47357 * 150.02304 * 1 2 3 27 27 H 1.07998 * 120.15005 * 359.94738 * 4 3 2 28 28 H 1.07993 * 119.63337 * 180.29850 * 7 5 4 29 29 H 1.08004 * 120.06642 * 180.02562 * 8 7 5 30 30 H 0.97000 * 119.99922 * 0.02562 * 14 12 11 31 31 H 1.09000 * 109.46936 * 299.99206 * 15 14 12 32 32 H 1.08999 * 109.47328 * 59.99999 * 15 14 12 33 33 H 0.96999 * 119.99794 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3862 1.1687 0.0000 4 6 2.1709 2.5491 0.0052 5 6 3.2397 3.4014 -0.0008 6 17 2.9749 5.1171 -0.0013 7 6 4.5368 2.9032 -0.0007 8 6 4.7693 1.5451 -0.0004 9 6 3.6980 0.6591 0.0005 10 8 3.6125 -0.6856 0.0005 11 6 2.3235 -1.0851 0.0009 12 6 1.8716 -2.4837 0.0006 13 8 0.6820 -2.7385 0.0006 14 7 2.7750 -3.4839 0.0003 15 6 2.3245 -4.8779 -0.0006 16 6 3.5221 -5.7927 -0.0013 17 1 4.5189 -5.3774 -0.0007 18 6 3.3450 -7.1601 -0.0017 19 7 2.1310 -7.6659 -0.0019 20 14 4.8294 -8.2942 -0.0019 21 1 5.6477 -8.0387 1.2107 22 1 4.3727 -9.7072 -0.0030 23 1 5.6477 -8.0380 -1.2143 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8897 -0.5143 26 1 -0.3634 -0.8902 -0.5135 27 1 1.1646 2.9411 0.0098 28 1 5.3719 3.5879 -0.0007 29 1 5.7820 1.1695 0.0001 30 1 3.7235 -3.2807 0.0007 31 1 1.7237 -5.0661 0.8892 32 1 1.7241 -5.0651 -0.8908 33 1 2.0064 -8.6279 -0.0026 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335944918.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:25 Heat of formation + Delta-G solvation = -44.421252 kcal Electronic energy + Delta-G solvation = -19898.812020 eV Core-core repulsion = 16529.628212 eV Total energy + Delta-G solvation = -3369.183808 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.71744 -40.54336 -39.22091 -37.28749 -36.42201 -35.02817 -34.41427 -31.61985 -31.20362 -29.72289 -28.37149 -25.76014 -24.20707 -23.81451 -21.97364 -21.30191 -19.86926 -18.38377 -18.17243 -17.66628 -17.56340 -17.01307 -16.45471 -16.02497 -15.93693 -15.23340 -15.12342 -14.55813 -14.33128 -14.22025 -14.06474 -13.93446 -13.88581 -13.60113 -13.17486 -12.96106 -12.70642 -12.41765 -12.26837 -12.26153 -11.88735 -11.55760 -11.20121 -11.08288 -10.83449 -10.06918 -9.64610 -9.33572 -8.31574 -6.48252 -0.62047 -0.00010 0.65540 1.01178 1.32183 1.43050 1.46592 1.54936 2.01099 2.20852 2.40005 2.42808 3.03517 3.26495 3.38426 3.69089 3.85612 3.94206 4.13154 4.20245 4.54937 4.67280 4.70391 4.82070 4.95896 4.98507 5.04814 5.06160 5.18266 5.21323 5.30771 5.38170 5.55603 5.77479 5.84167 6.56800 6.67161 7.06422 7.26097 8.80219 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.032823 B = 0.003036 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.854907 B = 9219.557476 C =10051.964606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.078 4.078 3 C -0.145 4.145 4 C -0.050 4.050 5 C -0.057 4.057 6 Cl -0.053 7.053 7 C -0.064 4.064 8 C -0.095 4.095 9 C 0.056 3.944 10 O -0.188 6.188 11 C -0.046 4.046 12 C 0.581 3.419 13 O -0.556 6.556 14 N -0.693 5.693 15 C 0.266 3.734 16 C -0.562 4.562 17 H 0.080 0.920 18 C 0.009 3.991 19 N -0.927 5.927 20 Si 0.984 3.016 21 H -0.263 1.263 22 H -0.283 1.283 23 H -0.263 1.263 24 H 0.085 0.915 25 H 0.097 0.903 26 H 0.071 0.929 27 H 0.157 0.843 28 H 0.180 0.820 29 H 0.170 0.830 30 H 0.409 0.591 31 H 0.000 1.000 32 H 0.000 1.000 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.484 25.108 0.019 25.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.146 4.146 4 C -0.068 4.068 5 C -0.084 4.084 6 Cl -0.024 7.024 7 C -0.082 4.082 8 C -0.113 4.113 9 C 0.007 3.993 10 O -0.090 6.090 11 C -0.096 4.096 12 C 0.367 3.633 13 O -0.438 6.438 14 N -0.341 5.341 15 C 0.144 3.856 16 C -0.600 4.600 17 H 0.098 0.902 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.807 3.193 21 H -0.187 1.187 22 H -0.208 1.208 23 H -0.188 1.188 24 H 0.104 0.896 25 H 0.116 0.884 26 H 0.089 0.911 27 H 0.174 0.826 28 H 0.197 0.803 29 H 0.188 0.812 30 H 0.244 0.756 31 H 0.018 0.982 32 H 0.018 0.982 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.755 24.673 0.018 25.127 hybrid contribution 0.498 -0.852 0.009 0.987 sum 5.254 23.820 0.027 24.393 Atomic orbital electron populations 1.20493 0.86353 1.04228 1.03783 1.21660 0.97914 0.89220 0.99307 1.19700 0.92260 0.94029 1.08618 1.20312 1.00470 0.88998 0.97037 1.20488 0.94714 0.85740 1.07447 1.98387 1.96872 1.10128 1.97032 1.21244 0.96326 0.94102 0.96523 1.20306 0.97731 0.90136 1.03160 1.20347 0.96627 0.80963 1.01348 1.84020 1.26656 1.21720 1.76596 1.21625 0.81731 0.94198 1.12003 1.17058 0.85886 0.82631 0.77752 1.90784 1.16580 1.83183 1.53263 1.46221 1.09966 1.07005 1.70862 1.18728 0.95647 0.76132 0.95119 1.21542 0.93031 0.91780 1.53608 0.90155 1.26007 0.99647 0.99855 0.93663 1.70105 1.23356 1.13537 1.49506 0.85222 0.77987 0.76669 0.79465 1.18750 1.20811 1.18761 0.89626 0.88391 0.91058 0.82552 0.80259 0.81209 0.75562 0.98225 0.98234 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.41 9.81 71.24 0.70 -1.71 16 2 C -0.08 -2.33 6.39 -18.35 -0.12 -2.45 16 3 C -0.14 -3.63 6.37 -20.23 -0.13 -3.76 16 4 C -0.05 -0.93 9.82 22.27 0.22 -0.72 16 5 C -0.06 -0.91 6.28 22.08 0.14 -0.77 16 6 Cl -0.05 -0.73 28.93 -2.72 -0.08 -0.81 16 7 C -0.06 -0.86 9.79 22.33 0.22 -0.64 16 8 C -0.10 -1.63 10.07 22.35 0.23 -1.40 16 9 C 0.06 1.41 7.41 23.07 0.17 1.58 16 10 O -0.19 -5.90 10.28 -13.20 -0.14 -6.04 16 11 C -0.05 -1.62 7.07 24.00 0.17 -1.45 16 12 C 0.58 25.01 7.80 86.53 0.67 25.69 16 13 O -0.56 -26.92 14.62 -4.21 -0.06 -26.98 16 14 N -0.69 -31.14 5.54 -470.52 -2.61 -33.75 16 15 C 0.27 14.57 5.43 85.64 0.46 15.03 16 16 C -0.56 -30.75 9.28 25.60 0.24 -30.51 16 17 H 0.08 4.03 7.60 -2.91 -0.02 4.01 16 18 C 0.01 0.47 5.46 84.66 0.46 0.93 16 19 N -0.93 -55.20 13.29 21.45 0.28 -54.91 16 20 Si 0.98 42.20 29.54 68.60 2.03 44.23 16 21 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 22 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 23 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 24 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.10 1.87 8.14 -2.39 -0.02 1.86 16 26 H 0.07 2.25 6.37 -2.38 -0.02 2.24 16 27 H 0.16 2.33 8.06 -2.91 -0.02 2.31 16 28 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 29 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 30 H 0.41 16.23 8.04 -92.71 -0.74 15.48 16 31 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -67.68 311.53 3.28 -64.40 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.42 Total: 14.05 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 3.43 Total: -0.18 kcal Atomic # 7 Polarization: -86.34 SS G_CDS: -2.32 Total: -88.66 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.20 Total: -33.02 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -67.68 3.28 -64.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335944918.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.980 kcal (2) G-P(sol) polarization free energy of solvation -67.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds