Wall clock time and date at job start Tue Mar 31 2020 07:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40394 * 122.21176 * 2 1 4 4 C 1.41594 * 128.81542 * 0.02562 * 3 2 1 5 5 C 1.35871 * 120.52949 * 179.69606 * 4 3 2 6 6 C 1.39202 * 120.66898 * 0.25807 * 5 4 3 7 7 F 1.35100 * 119.93863 * 180.02562 * 6 5 4 8 8 C 1.37637 * 120.12673 * 0.02562 * 6 5 4 9 9 C 1.39840 * 120.16282 * 359.97438 * 8 6 5 10 10 S 1.76006 * 130.55644 * 180.02562 * 9 8 6 11 11 C 1.33701 * 122.20595 * 179.97438 * 2 1 3 12 12 C 1.46934 * 124.65955 * 0.02562 * 11 2 1 13 13 O 1.21656 * 120.00284 * 0.02562 * 12 11 2 14 14 N 1.34784 * 120.00050 * 180.02562 * 12 11 2 15 15 C 1.46493 * 120.00030 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.47031 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99837 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99849 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00142 * 359.97438 * 18 16 15 20 20 Si 1.86810 * 119.99758 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46732 * 59.99679 * 20 18 16 22 22 H 1.48496 * 109.46775 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46688 * 299.99643 * 20 18 16 24 24 H 1.08996 * 109.47326 * 89.99664 * 1 2 3 25 25 H 1.09002 * 109.47245 * 210.00283 * 1 2 3 26 26 H 1.09002 * 109.46829 * 329.99819 * 1 2 3 27 27 H 1.08002 * 119.73746 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.66166 * 180.28194 * 5 4 3 29 29 H 1.08004 * 119.91703 * 180.02562 * 8 6 5 30 30 H 0.97006 * 119.99885 * 359.97438 * 14 12 11 31 31 H 1.08991 * 109.47840 * 299.99985 * 15 14 12 32 32 H 1.09003 * 109.46832 * 60.00622 * 15 14 12 33 33 H 0.97002 * 119.99590 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2554 1.1878 0.0000 4 6 1.7951 2.5269 0.0005 5 6 2.6774 3.5601 0.0066 6 6 4.0490 3.3224 0.0071 7 9 4.9132 4.3609 0.0138 8 6 4.5265 2.0316 0.0009 9 6 3.6363 0.9531 -0.0055 10 16 3.9390 -0.7807 -0.0136 11 6 2.2196 -1.1313 0.0005 12 6 1.6423 -2.4825 0.0006 13 8 0.4345 -2.6280 -0.0003 14 7 2.4509 -3.5608 0.0016 15 6 1.8754 -4.9079 0.0023 16 6 2.9846 -5.9281 0.0028 17 1 4.0152 -5.6052 0.0022 18 6 2.6837 -7.2737 0.0029 19 7 1.4287 -7.6668 0.0030 20 14 4.0587 -8.5382 0.0042 21 1 4.8960 -8.3576 1.2173 22 1 3.4753 -9.9038 0.0047 23 1 4.8978 -8.3583 -1.2078 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 0.7341 2.7286 0.0005 28 1 2.3108 4.5759 0.0115 29 1 5.5913 1.8511 0.0017 30 1 3.4140 -3.4449 0.0020 31 1 1.2598 -5.0397 0.8919 32 1 1.2606 -5.0408 -0.8880 33 1 1.2171 -8.6135 0.0035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335972215.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:03 Heat of formation + Delta-G solvation = -46.798162 kcal Electronic energy + Delta-G solvation = -19728.701898 eV Core-core repulsion = 16373.831515 eV Total energy + Delta-G solvation = -3354.870383 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.063 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.21406 -40.15237 -38.85483 -35.63997 -34.28688 -32.44659 -31.68931 -29.74671 -28.70033 -26.97436 -24.15250 -23.43421 -22.48065 -20.59707 -19.49107 -18.80115 -17.52549 -16.65456 -16.40922 -15.93350 -15.83314 -15.22524 -14.98827 -14.90455 -14.30701 -14.26993 -13.75370 -13.66615 -13.33753 -12.88834 -12.72153 -12.59375 -12.04584 -11.99332 -11.86684 -11.38759 -11.03059 -10.98170 -10.88078 -10.81359 -10.34946 -9.91079 -9.47883 -9.25785 -8.81442 -8.65071 -8.03992 -7.83907 -6.21472 -4.28995 0.12864 0.80404 1.24644 1.76164 1.76640 3.20885 3.23394 3.28144 3.29558 3.64294 3.80558 3.92531 4.29080 4.34386 4.57762 4.67776 4.86991 5.14941 5.15499 5.22890 5.34554 5.50413 5.60348 5.67919 5.82229 5.85146 5.90532 6.25052 6.43651 6.56835 7.19304 7.25161 7.42169 7.57428 7.89158 8.44230 8.65583 8.88881 9.37347 10.88611 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.029672 B = 0.003420 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.417668 B = 8185.765476 C = 9108.697592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.020 4.020 3 C -0.086 4.086 4 C -0.038 4.038 5 C -0.156 4.156 6 C 0.118 3.882 7 F -0.135 7.135 8 C -0.121 4.121 9 C -0.115 4.115 10 S 0.141 5.859 11 C -0.213 4.213 12 C 0.569 3.431 13 O -0.533 6.533 14 N -0.701 5.701 15 C 0.250 3.750 16 C -0.547 4.547 17 H 0.063 0.937 18 C 0.066 3.934 19 N -0.885 5.885 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.274 1.274 24 H 0.077 0.923 25 H 0.105 0.895 26 H 0.061 0.939 27 H 0.140 0.860 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.389 0.611 31 H 0.032 0.968 32 H 0.032 0.968 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.948 21.410 0.017 21.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.034 4.034 3 C -0.095 4.095 4 C -0.058 4.058 5 C -0.177 4.177 6 C 0.095 3.905 7 F -0.114 7.114 8 C -0.145 4.145 9 C -0.231 4.231 10 S 0.410 5.590 11 C -0.332 4.332 12 C 0.352 3.648 13 O -0.413 6.413 14 N -0.349 5.349 15 C 0.130 3.870 16 C -0.585 4.585 17 H 0.081 0.919 18 C -0.138 4.138 19 N -0.522 5.522 20 Si 0.732 3.268 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.200 1.200 24 H 0.095 0.905 25 H 0.123 0.877 26 H 0.080 0.920 27 H 0.158 0.842 28 H 0.159 0.841 29 H 0.159 0.841 30 H 0.222 0.778 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.306 20.062 0.004 20.519 hybrid contribution 0.283 0.372 -0.012 0.467 sum 4.589 20.433 -0.008 20.942 Atomic orbital electron populations 1.20914 0.88333 1.04367 1.03395 1.18946 0.98153 0.89401 0.96884 1.18163 0.91457 0.94177 1.05719 1.20686 1.00207 0.89496 0.95362 1.20642 0.91114 1.00819 1.05155 1.17414 0.87379 0.83504 1.02191 1.91516 1.69437 1.56660 1.93759 1.20285 1.00007 0.89401 1.04768 1.22699 0.96291 0.98271 1.05882 1.84271 1.03630 0.95092 1.76027 1.23926 0.96624 0.98551 1.14087 1.17039 0.86808 0.82494 0.78408 1.90718 1.13566 1.85508 1.51533 1.46449 1.09156 1.07854 1.71393 1.19207 0.94717 0.74928 0.98134 1.21162 0.92618 0.90997 1.53758 0.91883 1.24934 0.95949 0.98437 0.94517 1.69957 1.17196 1.16465 1.48551 0.86455 0.81557 0.80038 0.78789 1.19982 1.21002 1.19980 0.90492 0.87695 0.92002 0.84202 0.84122 0.84125 0.77793 0.95036 0.95039 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 9.22 36.01 0.33 -1.15 16 2 C -0.02 -0.30 5.86 -105.40 -0.62 -0.91 16 3 C -0.09 -1.07 5.85 -107.12 -0.63 -1.70 16 4 C -0.04 -0.36 9.62 -39.15 -0.38 -0.74 16 5 C -0.16 -1.36 9.92 -40.07 -0.40 -1.76 16 6 C 0.12 1.18 7.29 -39.44 -0.29 0.89 16 7 F -0.14 -1.37 17.26 2.25 0.04 -1.33 16 8 C -0.12 -1.28 10.05 -39.20 -0.39 -1.68 16 9 C -0.11 -1.42 6.50 -38.30 -0.25 -1.67 16 10 S 0.14 1.90 22.26 -107.50 -2.39 -0.49 16 11 C -0.21 -3.49 6.31 -37.65 -0.24 -3.73 16 12 C 0.57 11.59 7.77 -12.74 -0.10 11.49 16 13 O -0.53 -12.21 13.89 5.23 0.07 -12.14 16 14 N -0.70 -15.03 5.54 -62.72 -0.35 -15.38 16 15 C 0.25 6.54 5.43 -5.19 -0.03 6.51 16 16 C -0.55 -14.72 9.28 -34.44 -0.32 -15.04 16 17 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 18 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 19 N -0.88 -25.66 13.29 55.43 0.74 -24.93 16 20 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.10 1.68 5.72 -51.93 -0.30 1.39 16 26 H 0.06 0.62 7.34 -51.93 -0.38 0.24 16 27 H 0.14 0.98 7.41 -52.49 -0.39 0.59 16 28 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 29 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 30 H 0.39 7.42 7.37 -40.82 -0.30 7.12 16 31 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 305.94 15.07 4.61 4.61 Total: -1.00 -30.37 305.94 -8.72 -39.09 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -3.02 Total: 2.72 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -3.40 Total: -7.77 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.39 Total: -40.31 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.07 Total: -12.14 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.39 Total: -0.49 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.37 -8.72 -39.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335972215.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.711 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds