Wall clock time and date at job start Tue Mar 31 2020 07:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.40394 * 122.21176 * 2 1 4 4 C 1.41594 * 128.81542 * 0.02562 * 3 2 1 5 5 C 1.35871 * 120.52949 * 179.69606 * 4 3 2 6 6 C 1.39202 * 120.66898 * 0.25807 * 5 4 3 7 7 F 1.35100 * 119.93863 * 180.02562 * 6 5 4 8 8 C 1.37637 * 120.12673 * 0.02562 * 6 5 4 9 9 C 1.39840 * 120.16282 * 359.97438 * 8 6 5 10 10 S 1.76006 * 130.55644 * 180.02562 * 9 8 6 11 11 C 1.33701 * 122.20595 * 179.97438 * 2 1 3 12 12 C 1.46934 * 124.65955 * 0.02562 * 11 2 1 13 13 O 1.21656 * 120.00284 * 0.02562 * 12 11 2 14 14 N 1.34784 * 120.00050 * 180.02562 * 12 11 2 15 15 C 1.46493 * 120.00030 * 179.97438 * 14 12 11 16 16 C 1.50706 * 109.47031 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99837 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99849 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00142 * 359.97438 * 18 16 15 20 20 Si 1.86810 * 119.99758 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46732 * 59.99679 * 20 18 16 22 22 H 1.48496 * 109.46775 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.46688 * 299.99643 * 20 18 16 24 24 H 1.08996 * 109.47326 * 89.99664 * 1 2 3 25 25 H 1.09002 * 109.47245 * 210.00283 * 1 2 3 26 26 H 1.09002 * 109.46829 * 329.99819 * 1 2 3 27 27 H 1.08002 * 119.73746 * 359.97438 * 4 3 2 28 28 H 1.08000 * 119.66166 * 180.28194 * 5 4 3 29 29 H 1.08004 * 119.91703 * 180.02562 * 8 6 5 30 30 H 0.97006 * 119.99885 * 359.97438 * 14 12 11 31 31 H 1.08991 * 109.47840 * 299.99985 * 15 14 12 32 32 H 1.09003 * 109.46832 * 60.00622 * 15 14 12 33 33 H 0.97002 * 119.99590 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2554 1.1878 0.0000 4 6 1.7951 2.5269 0.0005 5 6 2.6774 3.5601 0.0066 6 6 4.0490 3.3224 0.0071 7 9 4.9132 4.3609 0.0138 8 6 4.5265 2.0316 0.0009 9 6 3.6363 0.9531 -0.0055 10 16 3.9390 -0.7807 -0.0136 11 6 2.2196 -1.1313 0.0005 12 6 1.6423 -2.4825 0.0006 13 8 0.4345 -2.6280 -0.0003 14 7 2.4509 -3.5608 0.0016 15 6 1.8754 -4.9079 0.0023 16 6 2.9846 -5.9281 0.0028 17 1 4.0152 -5.6052 0.0022 18 6 2.6837 -7.2737 0.0029 19 7 1.4287 -7.6668 0.0030 20 14 4.0587 -8.5382 0.0042 21 1 4.8960 -8.3576 1.2173 22 1 3.4753 -9.9038 0.0047 23 1 4.8978 -8.3583 -1.2078 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 0.7341 2.7286 0.0005 28 1 2.3108 4.5759 0.0115 29 1 5.5913 1.8511 0.0017 30 1 3.4140 -3.4449 0.0020 31 1 1.2598 -5.0397 0.8919 32 1 1.2606 -5.0408 -0.8880 33 1 1.2171 -8.6135 0.0035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335972215.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:03 Heat of formation + Delta-G solvation = -65.256154 kcal Electronic energy + Delta-G solvation = -19729.502297 eV Core-core repulsion = 16373.831515 eV Total energy + Delta-G solvation = -3355.670781 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.063 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.01510 -41.26522 -40.27552 -36.80275 -36.08347 -34.45390 -32.50288 -30.83928 -30.09689 -28.61453 -25.56158 -24.38175 -23.98202 -22.04451 -20.80216 -19.85287 -18.82127 -18.07864 -17.61182 -17.05078 -16.75003 -16.69561 -16.50108 -16.41680 -15.81431 -15.08026 -15.05120 -14.78170 -14.59227 -14.10390 -13.96817 -13.92941 -13.63960 -13.54891 -13.06454 -12.89573 -12.70685 -12.31306 -12.25254 -11.91732 -11.76734 -11.54937 -10.90525 -10.83629 -10.78269 -10.01537 -9.55884 -8.84410 -8.31975 -6.49093 -0.88942 0.01921 0.22392 0.70950 0.71644 1.42058 1.46084 1.54300 2.02349 2.20548 2.43227 2.44836 3.02933 3.12485 3.47199 3.62746 3.82190 3.90557 4.08831 4.34255 4.37667 4.40899 4.75509 4.83825 4.88115 4.96707 5.01826 5.06416 5.18371 5.26314 5.32112 5.50204 5.58617 5.69618 5.79080 6.57249 6.69898 7.13188 7.28040 8.79867 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.029672 B = 0.003420 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.417668 B = 8185.765476 C = 9108.697592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.001 3.999 3 C -0.108 4.108 4 C -0.027 4.027 5 C -0.147 4.147 6 C 0.127 3.873 7 F -0.133 7.133 8 C -0.131 4.131 9 C -0.114 4.114 10 S 0.146 5.854 11 C -0.260 4.260 12 C 0.569 3.431 13 O -0.569 6.569 14 N -0.703 5.703 15 C 0.269 3.731 16 C -0.563 4.563 17 H 0.080 0.920 18 C 0.009 3.991 19 N -0.927 5.927 20 Si 0.984 3.016 21 H -0.262 1.262 22 H -0.283 1.283 23 H -0.262 1.262 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.100 0.900 27 H 0.171 0.829 28 H 0.175 0.825 29 H 0.155 0.845 30 H 0.401 0.599 31 H -0.004 1.004 32 H -0.004 1.004 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.596 24.187 0.003 24.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.013 4.013 3 C -0.117 4.117 4 C -0.046 4.046 5 C -0.168 4.168 6 C 0.104 3.896 7 F -0.112 7.112 8 C -0.155 4.155 9 C -0.231 4.231 10 S 0.414 5.586 11 C -0.378 4.378 12 C 0.356 3.644 13 O -0.451 6.451 14 N -0.351 5.351 15 C 0.147 3.853 16 C -0.600 4.600 17 H 0.098 0.902 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.806 3.194 21 H -0.187 1.187 22 H -0.208 1.208 23 H -0.187 1.187 24 H 0.101 0.899 25 H 0.090 0.910 26 H 0.118 0.882 27 H 0.189 0.811 28 H 0.193 0.807 29 H 0.173 0.827 30 H 0.236 0.764 31 H 0.014 0.986 32 H 0.014 0.986 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.982 22.876 -0.010 23.646 hybrid contribution -0.264 -0.210 -0.007 0.338 sum 5.718 22.666 -0.017 23.376 Atomic orbital electron populations 1.20933 0.87838 1.04585 1.03766 1.19241 0.98695 0.89684 0.93680 1.18251 0.91166 0.94751 1.07482 1.21024 1.02035 0.87931 0.93660 1.21016 0.90193 1.02299 1.03248 1.17607 0.88085 0.83184 1.00723 1.91533 1.69597 1.56479 1.93553 1.20448 1.00663 0.89271 1.05123 1.22790 0.96805 0.97658 1.05866 1.84070 1.01260 0.96617 1.76632 1.23423 0.98807 0.96532 1.19010 1.17554 0.86317 0.83789 0.76753 1.90692 1.15109 1.86532 1.52806 1.46169 1.09875 1.06632 1.72468 1.18642 0.94250 0.77668 0.94782 1.21544 0.93324 0.91492 1.53671 0.90208 1.26020 0.98680 1.00852 0.93612 1.70113 1.19800 1.17123 1.49481 0.85225 0.78011 0.76611 0.79517 1.18693 1.20782 1.18685 0.89893 0.90982 0.88174 0.81141 0.80721 0.82709 0.76387 0.98610 0.98620 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.91 9.22 71.24 0.66 -2.26 16 2 C 0.00 0.04 5.86 -20.37 -0.12 -0.08 16 3 C -0.11 -2.44 5.85 -21.48 -0.13 -2.56 16 4 C -0.03 -0.40 9.62 22.55 0.22 -0.18 16 5 C -0.15 -1.85 9.92 21.95 0.22 -1.63 16 6 C 0.13 2.05 7.29 22.36 0.16 2.22 16 7 F -0.13 -2.20 17.26 44.97 0.78 -1.43 16 8 C -0.13 -2.42 10.05 22.52 0.23 -2.20 16 9 C -0.11 -2.62 6.50 23.10 0.15 -2.47 16 10 S 0.15 3.89 22.26 -56.49 -1.26 2.64 16 11 C -0.26 -8.72 6.31 23.52 0.15 -8.57 16 12 C 0.57 24.60 7.77 86.52 0.67 25.27 16 13 O -0.57 -27.97 13.89 -4.21 -0.06 -28.03 16 14 N -0.70 -31.91 5.54 -470.59 -2.61 -34.52 16 15 C 0.27 14.98 5.43 85.64 0.46 15.44 16 16 C -0.56 -31.11 9.28 25.60 0.24 -30.87 16 17 H 0.08 4.04 7.60 -2.91 -0.02 4.02 16 18 C 0.01 0.48 5.46 84.65 0.46 0.94 16 19 N -0.93 -55.67 13.29 21.45 0.28 -55.38 16 20 Si 0.98 42.43 29.54 68.60 2.03 44.45 16 21 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 22 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 24 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.07 2.41 5.72 -2.39 -0.01 2.39 16 26 H 0.10 1.75 7.34 -2.39 -0.02 1.73 16 27 H 0.17 1.45 7.41 -2.91 -0.02 1.43 16 28 H 0.18 1.08 8.06 -2.91 -0.02 1.05 16 29 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 30 H 0.40 15.94 7.37 -92.70 -0.68 15.26 16 31 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 33 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -69.57 305.94 3.02 -66.55 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.49 Total: 12.67 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 3.37 Total: -6.96 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -2.32 Total: -89.90 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.06 Total: -28.03 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.78 Total: -1.43 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -1.26 Total: 2.64 kcal Total: -69.57 3.02 -66.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335972215.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.292 kcal (2) G-P(sol) polarization free energy of solvation -69.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds