Wall clock time and date at job start Tue Mar 31 2020 06:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86797 * 120.00117 * 2 1 4 4 H 1.48496 * 109.47618 * 270.00601 * 3 2 1 5 5 H 1.48503 * 109.47079 * 30.00392 * 3 2 1 6 6 H 1.48504 * 109.47245 * 150.00168 * 3 2 1 7 7 C 1.39863 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99477 * 190.74999 * 7 2 1 9 9 C 1.41132 * 120.00283 * 10.75020 * 7 2 1 10 10 C 1.40888 * 120.15204 * 209.45199 * 9 7 2 11 11 C 1.36341 * 119.83300 * 180.25150 * 10 9 7 12 12 C 1.39567 * 120.16347 * 359.49407 * 11 10 9 13 13 N 1.38847 * 119.84665 * 180.25621 * 12 11 10 14 14 S 1.65602 * 120.00298 * 133.74521 * 13 12 11 15 15 O 1.42099 * 106.39959 * 52.20519 * 14 13 12 16 16 O 1.42097 * 106.40570 * 185.12344 * 14 13 12 17 17 C 1.76199 * 107.21820 * 298.66735 * 14 13 12 18 18 C 1.34515 * 125.78862 * 95.12945 * 17 14 13 19 19 C 1.41387 * 106.84105 * 179.97438 * 18 17 14 20 20 C 1.34516 * 106.83900 * 0.02562 * 19 18 17 21 21 O 1.34300 * 108.42051 * 359.73161 * 20 19 18 22 22 C 1.39573 * 120.31205 * 0.23821 * 12 11 10 23 23 C 1.36339 * 120.16235 * 0.02562 * 22 12 11 24 24 H 0.97001 * 119.99614 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.08394 * 0.02562 * 10 9 7 26 26 H 1.08007 * 119.92099 * 179.77783 * 11 10 9 27 27 H 0.97006 * 119.99933 * 313.75327 * 13 12 11 28 28 H 1.07997 * 126.58243 * 359.96936 * 18 17 14 29 29 H 1.07999 * 126.57895 * 179.97438 * 19 18 17 30 30 H 1.07996 * 125.78736 * 180.02562 * 20 19 18 31 31 H 1.07996 * 119.91852 * 180.02562 * 22 12 11 32 32 H 1.08000 * 120.08340 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4905 2.0465 -1.4000 5 1 1.4406 2.6526 0.7001 6 1 3.5407 1.4401 0.7000 7 6 2.0083 -1.2113 -0.0005 8 1 3.0742 -1.2195 0.1739 9 6 1.3212 -2.4227 -0.2291 10 6 1.7906 -3.6214 0.3435 11 6 1.1247 -4.7888 0.1143 12 6 -0.0252 -4.7966 -0.6767 13 7 -0.7012 -5.9884 -0.9015 14 16 -2.3492 -6.0470 -0.7499 15 8 -2.8637 -4.9943 -1.5539 16 8 -2.7199 -7.4080 -0.9211 17 6 -2.7346 -5.6324 0.9187 18 6 -3.0643 -4.4085 1.3692 19 6 -3.2910 -4.5310 2.7593 20 6 -3.0857 -5.8223 3.0753 21 8 -2.7544 -6.4857 1.9556 22 6 -0.4991 -3.6120 -1.2425 23 6 0.1597 -2.4381 -1.0262 24 1 -0.4849 0.8401 0.0004 25 1 2.6777 -3.6161 0.9595 26 1 1.4853 -5.7092 0.5496 27 1 -0.2081 -6.7868 -1.1472 28 1 -3.1410 -3.5055 0.7817 29 1 -3.5738 -3.7395 3.4375 30 1 -3.1770 -6.2534 4.0613 31 1 -1.3897 -3.6253 -1.8532 32 1 -0.2083 -1.5221 -1.4643 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336164907.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:11 Heat of formation + Delta-G solvation = -33.139300 kcal Electronic energy + Delta-G solvation = -21008.815203 eV Core-core repulsion = 17642.164324 eV Total energy + Delta-G solvation = -3366.650880 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.42402 -38.15670 -36.92261 -35.65352 -34.87347 -32.98452 -32.88098 -29.72770 -29.64303 -28.79891 -24.81834 -22.21366 -21.79161 -21.31694 -20.99802 -19.27903 -18.22874 -17.45276 -17.32559 -16.66182 -15.90423 -15.78215 -15.28665 -14.92433 -14.12868 -13.60556 -13.51935 -12.87329 -12.83199 -12.69337 -12.53396 -12.34479 -11.88964 -11.77512 -11.71730 -11.49997 -11.33167 -11.21845 -10.84214 -10.60683 -10.30587 -9.94780 -9.85965 -9.37670 -9.07123 -8.95071 -7.72032 -7.23034 -6.85853 -4.47202 0.53303 1.36624 2.53035 2.58856 2.93810 2.98791 3.01672 3.04052 3.08475 3.50221 3.84183 3.93449 4.49181 4.80725 5.02183 5.03043 5.49212 5.59277 5.82318 5.92141 6.05543 6.10593 6.29867 6.41116 6.83872 6.90262 6.92870 7.04634 7.08003 7.34421 7.48557 7.76572 7.90952 7.98875 8.12709 8.49087 8.73883 8.81302 10.07693 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.021355 B = 0.005089 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.879284 B = 5501.101904 C = 5945.780825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.072 3.928 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.452 4.452 8 H 0.080 0.920 9 C 0.110 3.890 10 C -0.213 4.213 11 C -0.086 4.086 12 C -0.015 4.015 13 N -1.023 6.023 14 S 2.706 3.294 15 O -0.933 6.933 16 O -0.966 6.966 17 C -0.573 4.573 18 C -0.072 4.072 19 C -0.231 4.231 20 C -0.001 4.001 21 O -0.128 6.128 22 C -0.120 4.120 23 C -0.145 4.145 24 H 0.283 0.717 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.415 0.585 28 H 0.168 0.832 29 H 0.157 0.843 30 H 0.210 0.790 31 H 0.125 0.875 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.603 -5.972 3.809 7.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.146 4.146 3 Si 0.738 3.262 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.482 4.482 8 H 0.098 0.902 9 C 0.107 3.893 10 C -0.234 4.234 11 C -0.108 4.108 12 C -0.111 4.111 13 N -0.777 5.777 14 S 2.792 3.208 15 O -0.923 6.923 16 O -0.956 6.956 17 C -0.702 4.702 18 C -0.093 4.093 19 C -0.250 4.250 20 C -0.073 4.073 21 O -0.022 6.022 22 C -0.141 4.141 23 C -0.165 4.165 24 H 0.094 0.906 25 H 0.115 0.885 26 H 0.112 0.888 27 H 0.251 0.749 28 H 0.186 0.814 29 H 0.175 0.825 30 H 0.227 0.773 31 H 0.142 0.858 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.536 -6.250 3.228 8.370 hybrid contribution 0.686 0.994 1.021 1.581 sum -3.851 -5.256 4.249 7.779 Atomic orbital electron populations 1.69811 1.07454 1.29444 1.35035 1.25950 0.94908 1.01451 0.92321 0.86214 0.80302 0.80267 0.79391 1.19189 1.20231 1.18617 1.19615 0.96112 0.90533 1.41909 0.90205 1.17768 0.91405 0.92147 0.87971 1.20695 1.03342 0.93047 1.06281 1.20324 0.95957 0.97168 0.97337 1.16826 1.00303 0.83984 1.09974 1.52335 1.25469 1.17303 1.82561 1.02506 0.73015 0.73020 0.72238 1.93611 1.78742 1.57756 1.62222 1.93536 1.82058 1.34608 1.85357 1.35851 1.22709 0.97690 1.13941 1.22084 0.94493 0.97309 0.95435 1.22094 1.09196 0.97605 0.96133 1.24588 0.99321 0.92447 0.90896 1.84151 1.67252 1.36294 1.14493 1.21170 1.00926 0.92386 0.99657 1.21051 0.98131 0.96519 1.00788 0.90634 0.88459 0.88846 0.74883 0.81434 0.82528 0.77348 0.85778 0.85650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.33 10.86 55.54 0.60 -18.73 16 2 C 0.07 1.70 5.25 -17.34 -0.09 1.60 16 3 Si 0.91 17.72 29.57 -169.99 -5.03 12.70 16 4 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 5 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.45 -11.21 9.04 -37.88 -0.34 -11.55 16 8 H 0.08 1.89 7.87 -52.48 -0.41 1.48 16 9 C 0.11 2.75 5.55 -106.80 -0.59 2.16 16 10 C -0.21 -4.83 9.74 -39.26 -0.38 -5.22 16 11 C -0.09 -1.78 9.90 -39.77 -0.39 -2.17 16 12 C -0.01 -0.30 6.13 -83.69 -0.51 -0.82 16 13 N -1.02 -17.67 5.72 32.51 0.19 -17.49 16 14 S 2.71 47.94 5.79 -107.50 -0.62 47.32 16 15 O -0.93 -18.33 14.89 -57.17 -0.85 -19.18 16 16 O -0.97 -18.22 18.02 -57.18 -1.03 -19.25 16 17 C -0.57 -10.10 7.22 29.42 0.21 -9.89 16 18 C -0.07 -1.24 10.58 -39.70 -0.42 -1.66 16 19 C -0.23 -3.31 10.91 -39.70 -0.43 -3.75 16 20 C 0.00 -0.01 12.09 29.42 0.36 0.35 16 21 O -0.13 -2.10 10.65 5.71 0.06 -2.04 16 22 C -0.12 -2.71 9.15 -39.77 -0.36 -3.08 16 23 C -0.14 -3.56 8.60 -39.27 -0.34 -3.90 16 24 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 25 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 26 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 27 H 0.41 5.90 8.95 -34.47 -0.31 5.60 16 28 H 0.17 2.88 8.06 -52.49 -0.42 2.45 16 29 H 0.16 1.82 8.06 -52.49 -0.42 1.39 16 30 H 0.21 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.12 2.74 5.67 -52.49 -0.30 2.44 16 32 H 0.13 3.20 6.24 -52.49 -0.33 2.87 16 LS Contribution 298.30 15.07 4.50 4.50 Total: -1.00 -29.96 298.30 -8.08 -38.05 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -2.59 Total: 12.05 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: -3.30 Total: -37.92 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: 0.79 Total: -36.22 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -1.82 Total: -40.48 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.70 kcal Atomic # 16 Polarization: 47.94 SS G_CDS: -0.62 Total: 47.32 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.96 -8.08 -38.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336164907.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.907 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds