Wall clock time and date at job start Tue Mar 31 2020 06:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30906 * 1 3 3 Si 1.86797 * 120.00117 * 2 1 4 4 H 1.48496 * 109.47618 * 270.00601 * 3 2 1 5 5 H 1.48503 * 109.47079 * 30.00392 * 3 2 1 6 6 H 1.48504 * 109.47245 * 150.00168 * 3 2 1 7 7 C 1.39863 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99477 * 190.74999 * 7 2 1 9 9 C 1.41132 * 120.00283 * 10.75020 * 7 2 1 10 10 C 1.40888 * 120.15204 * 209.45199 * 9 7 2 11 11 C 1.36341 * 119.83300 * 180.25150 * 10 9 7 12 12 C 1.39567 * 120.16347 * 359.49407 * 11 10 9 13 13 N 1.38847 * 119.84665 * 180.25621 * 12 11 10 14 14 S 1.65602 * 120.00298 * 133.74521 * 13 12 11 15 15 O 1.42099 * 106.39959 * 52.20519 * 14 13 12 16 16 O 1.42097 * 106.40570 * 185.12344 * 14 13 12 17 17 C 1.76199 * 107.21820 * 298.66735 * 14 13 12 18 18 C 1.34515 * 125.78862 * 95.12945 * 17 14 13 19 19 C 1.41387 * 106.84105 * 179.97438 * 18 17 14 20 20 C 1.34516 * 106.83900 * 0.02562 * 19 18 17 21 21 O 1.34300 * 108.42051 * 359.73161 * 20 19 18 22 22 C 1.39573 * 120.31205 * 0.23821 * 12 11 10 23 23 C 1.36339 * 120.16235 * 0.02562 * 22 12 11 24 24 H 0.97001 * 119.99614 * 359.97438 * 1 2 3 25 25 H 1.08000 * 120.08394 * 0.02562 * 10 9 7 26 26 H 1.08007 * 119.92099 * 179.77783 * 11 10 9 27 27 H 0.97006 * 119.99933 * 313.75327 * 13 12 11 28 28 H 1.07997 * 126.58243 * 359.96936 * 18 17 14 29 29 H 1.07999 * 126.57895 * 179.97438 * 19 18 17 30 30 H 1.07996 * 125.78736 * 180.02562 * 20 19 18 31 31 H 1.07996 * 119.91852 * 180.02562 * 22 12 11 32 32 H 1.08000 * 120.08340 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4905 2.0465 -1.4000 5 1 1.4406 2.6526 0.7001 6 1 3.5407 1.4401 0.7000 7 6 2.0083 -1.2113 -0.0005 8 1 3.0742 -1.2195 0.1739 9 6 1.3212 -2.4227 -0.2291 10 6 1.7906 -3.6214 0.3435 11 6 1.1247 -4.7888 0.1143 12 6 -0.0252 -4.7966 -0.6767 13 7 -0.7012 -5.9884 -0.9015 14 16 -2.3492 -6.0470 -0.7499 15 8 -2.8637 -4.9943 -1.5539 16 8 -2.7199 -7.4080 -0.9211 17 6 -2.7346 -5.6324 0.9187 18 6 -3.0643 -4.4085 1.3692 19 6 -3.2910 -4.5310 2.7593 20 6 -3.0857 -5.8223 3.0753 21 8 -2.7544 -6.4857 1.9556 22 6 -0.4991 -3.6120 -1.2425 23 6 0.1597 -2.4381 -1.0262 24 1 -0.4849 0.8401 0.0004 25 1 2.6777 -3.6161 0.9595 26 1 1.4853 -5.7092 0.5496 27 1 -0.2081 -6.7868 -1.1472 28 1 -3.1410 -3.5055 0.7817 29 1 -3.5738 -3.7395 3.4375 30 1 -3.1770 -6.2534 4.0613 31 1 -1.3897 -3.6253 -1.8532 32 1 -0.2083 -1.5221 -1.4643 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336164907.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:10 Heat of formation + Delta-G solvation = -53.209241 kcal Electronic energy + Delta-G solvation = -21009.685501 eV Core-core repulsion = 17642.164324 eV Total energy + Delta-G solvation = -3367.521178 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.62728 -39.87860 -38.45043 -37.17278 -36.54680 -34.58450 -34.20176 -31.43525 -30.91650 -30.54204 -26.58100 -23.48100 -23.13970 -22.91457 -22.71443 -20.65308 -19.61359 -19.23815 -18.82745 -18.21333 -17.16256 -17.04831 -16.96356 -16.40514 -15.80496 -15.32257 -14.82090 -14.55257 -14.18607 -14.05785 -13.99905 -13.79489 -13.52408 -13.39538 -13.33696 -13.12494 -12.81749 -12.74337 -12.45518 -12.30727 -11.96463 -11.57474 -11.19447 -11.11489 -10.76148 -10.15356 -9.50764 -8.99450 -8.60437 -6.31789 -0.89403 0.11178 0.86977 1.14217 1.37426 1.42124 1.51421 1.54736 1.68172 2.21634 2.22780 2.52727 2.73416 3.46250 3.68288 3.83415 3.94281 4.39643 4.41771 4.52164 4.53596 4.65854 4.81581 5.07387 5.13776 5.27047 5.28771 5.35074 5.69452 5.72579 5.76833 6.00171 6.09409 6.28801 6.36992 6.68084 6.92770 7.00923 8.35356 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.021355 B = 0.005089 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.879284 B = 5501.101904 C = 5945.780825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.032 3.968 3 Si 0.984 3.016 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.487 4.487 8 H 0.081 0.919 9 C 0.081 3.919 10 C -0.221 4.221 11 C -0.084 4.084 12 C 0.004 3.996 13 N -1.019 6.019 14 S 2.734 3.266 15 O -0.958 6.958 16 O -0.974 6.974 17 C -0.600 4.600 18 C -0.089 4.089 19 C -0.248 4.248 20 C 0.024 3.976 21 O -0.139 6.139 22 C -0.128 4.128 23 C -0.165 4.165 24 H 0.288 0.712 25 H 0.109 0.891 26 H 0.129 0.871 27 H 0.431 0.569 28 H 0.156 0.844 29 H 0.182 0.818 30 H 0.265 0.735 31 H 0.124 0.876 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.440 -7.105 5.510 9.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.183 4.183 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.181 1.181 7 C -0.517 4.517 8 H 0.099 0.901 9 C 0.078 3.922 10 C -0.241 4.241 11 C -0.106 4.106 12 C -0.092 4.092 13 N -0.774 5.774 14 S 2.821 3.179 15 O -0.948 6.948 16 O -0.964 6.964 17 C -0.730 4.730 18 C -0.111 4.111 19 C -0.267 4.267 20 C -0.047 4.047 21 O -0.033 6.033 22 C -0.150 4.150 23 C -0.185 4.185 24 H 0.098 0.902 25 H 0.127 0.873 26 H 0.147 0.853 27 H 0.270 0.730 28 H 0.174 0.826 29 H 0.200 0.800 30 H 0.281 0.719 31 H 0.142 0.858 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.343 -7.404 4.896 9.882 hybrid contribution 0.492 1.152 0.575 1.378 sum -3.851 -6.252 5.471 9.157 Atomic orbital electron populations 1.69879 1.08811 1.30488 1.36045 1.26752 0.95600 1.04474 0.91426 0.85167 0.79009 0.75953 0.79385 1.18905 1.19547 1.18075 1.19843 0.96362 0.91531 1.43970 0.90106 1.18075 0.91970 0.93375 0.88800 1.20911 1.03871 0.93062 1.06246 1.20624 0.95333 0.97956 0.96701 1.16783 0.99916 0.84258 1.08281 1.52176 1.25425 1.16925 1.82910 1.01242 0.72473 0.72189 0.71967 1.93581 1.79121 1.58515 1.63568 1.93524 1.82078 1.34990 1.85775 1.35403 1.25301 0.98124 1.14216 1.22287 0.94618 0.96906 0.97274 1.22479 1.09860 0.99302 0.95036 1.25674 0.95576 0.91894 0.91570 1.84146 1.67549 1.36526 1.15063 1.21238 1.00914 0.92828 0.99993 1.20950 0.99080 0.96556 1.01943 0.90167 0.87266 0.85297 0.72984 0.82649 0.80027 0.71898 0.85830 0.87627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.73 10.86 21.82 0.24 -41.49 16 2 C 0.03 1.55 5.25 85.22 0.45 2.00 16 3 Si 0.98 36.75 29.57 68.60 2.03 38.78 16 4 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.27 -9.72 7.11 99.48 0.71 -9.01 16 6 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 7 C -0.49 -24.85 9.04 23.37 0.21 -24.64 16 8 H 0.08 3.93 7.87 -2.91 -0.02 3.91 16 9 C 0.08 4.13 5.55 -21.27 -0.12 4.01 16 10 C -0.22 -9.93 9.74 22.48 0.22 -9.72 16 11 C -0.08 -3.36 9.90 22.15 0.22 -3.14 16 12 C 0.00 0.15 6.13 38.67 0.24 0.39 16 13 N -1.02 -33.72 5.72 -51.07 -0.29 -34.01 16 14 S 2.73 94.74 5.79 -56.49 -0.33 94.42 16 15 O -0.96 -37.91 14.89 -128.00 -1.91 -39.82 16 16 O -0.97 -35.39 18.02 -128.00 -2.31 -37.70 16 17 C -0.60 -20.44 7.22 66.97 0.48 -19.95 16 18 C -0.09 -3.03 10.58 22.19 0.23 -2.79 16 19 C -0.25 -6.51 10.91 22.19 0.24 -6.27 16 20 C 0.02 0.54 12.09 66.97 0.81 1.35 16 21 O -0.14 -4.18 10.65 -2.48 -0.03 -4.21 16 22 C -0.13 -5.92 9.15 22.15 0.20 -5.72 16 23 C -0.16 -8.44 8.60 22.47 0.19 -8.25 16 24 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 25 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 26 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 27 H 0.43 11.31 8.95 -96.74 -0.87 10.45 16 28 H 0.16 5.52 8.06 -2.91 -0.02 5.50 16 29 H 0.18 3.70 8.06 -2.91 -0.02 3.68 16 30 H 0.27 2.58 8.06 -2.91 -0.02 2.55 16 31 H 0.12 5.63 5.67 -2.91 -0.02 5.61 16 32 H 0.11 5.72 6.24 -2.91 -0.02 5.71 16 Total: -1.00 -65.85 298.30 1.10 -64.75 By element: Atomic # 1 Polarization: 31.70 SS G_CDS: 0.31 Total: 32.01 kcal Atomic # 6 Polarization: -76.11 SS G_CDS: 3.38 Total: -72.73 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -0.06 Total: -75.50 kcal Atomic # 8 Polarization: -77.49 SS G_CDS: -4.24 Total: -81.73 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 2.03 Total: 38.78 kcal Atomic # 16 Polarization: 94.74 SS G_CDS: -0.33 Total: 94.42 kcal Total: -65.85 1.10 -64.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336164907.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.538 kcal (2) G-P(sol) polarization free energy of solvation -65.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds