Wall clock time and date at job start Tue Mar 31 2020 07:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33849 * 122.21568 * 2 1 4 4 C 1.46782 * 124.66715 * 0.02562 * 3 2 1 5 5 O 1.21710 * 119.99804 * 6.57672 * 4 3 2 6 6 N 1.34773 * 119.99874 * 186.29527 * 4 3 2 7 7 C 1.46500 * 120.00415 * 187.06744 * 6 4 3 8 8 C 1.36834 * 120.00019 * 7.07261 * 6 4 3 9 9 H 1.08003 * 119.99948 * 40.89242 * 8 6 4 10 10 C 1.39037 * 119.99931 * 220.89331 * 8 6 4 11 11 N 1.31370 * 120.00394 * 8.08413 * 10 8 6 12 12 Si 1.86807 * 120.00102 * 188.08361 * 10 8 6 13 13 H 1.48495 * 109.46866 * 59.99866 * 12 10 8 14 14 H 1.48493 * 109.47207 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.46828 * 300.00121 * 12 10 8 16 16 S 1.75480 * 110.66452 * 180.28763 * 3 2 1 17 17 C 1.76007 * 91.62728 * 359.65410 * 16 3 2 18 18 C 1.39810 * 130.54722 * 179.97438 * 17 16 3 19 19 C 1.37654 * 120.17226 * 180.32865 * 18 17 16 20 20 F 1.35105 * 119.93676 * 180.02562 * 19 18 17 21 21 C 1.39208 * 120.13252 * 0.04536 * 19 18 17 22 22 C 1.35869 * 120.65864 * 359.97241 * 21 19 18 23 23 C 1.40094 * 109.56603 * 0.33858 * 17 16 3 24 24 H 1.08999 * 109.47327 * 89.97469 * 1 2 3 25 25 H 1.09008 * 109.46971 * 209.97489 * 1 2 3 26 26 H 1.08994 * 109.47326 * 329.97296 * 1 2 3 27 27 H 1.09000 * 109.47039 * 84.77891 * 7 6 4 28 28 H 1.08993 * 109.47229 * 204.78651 * 7 6 4 29 29 H 1.08998 * 109.46662 * 324.78521 * 7 6 4 30 30 H 0.96997 * 120.00525 * 179.97438 * 11 10 8 31 31 H 1.08006 * 119.91544 * 0.32661 * 18 17 16 32 32 H 1.08002 * 119.66962 * 179.97438 * 21 19 18 33 33 H 1.07999 * 119.73135 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2206 1.1324 0.0000 4 6 1.6443 2.4824 0.0005 5 8 0.4424 2.6309 0.1218 6 7 2.4467 3.5576 -0.1275 7 6 1.8951 4.9059 0.0276 8 6 3.7765 3.3900 -0.4025 9 1 4.0905 2.6418 -1.1153 10 6 4.7237 4.1829 0.2357 11 7 4.3610 4.9800 1.2150 12 14 6.5123 4.1149 -0.2992 13 1 6.6172 4.5095 -1.7269 14 1 7.3137 5.0477 0.5330 15 1 7.0276 2.7327 -0.1286 16 16 3.9398 0.7810 -0.0082 17 6 3.6365 -0.9527 -0.0010 18 6 4.5264 -2.0310 -0.0028 19 6 4.0488 -3.3221 -0.0027 20 9 4.9130 -4.3606 -0.0040 21 6 2.6772 -3.5598 -0.0018 22 6 1.7949 -2.5266 -0.0004 23 6 2.2554 -1.1874 -0.0005 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3633 -0.8903 0.5135 26 1 -0.3634 0.8897 0.5142 27 1 1.8768 5.1716 1.0846 28 1 2.5170 5.6176 -0.5153 29 1 0.8809 4.9316 -0.3709 30 1 5.0218 5.5328 1.6605 31 1 5.5913 -1.8506 -0.0043 32 1 2.3107 -4.5758 -0.0022 33 1 0.7339 -2.7282 -0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336271861.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:07 Heat of formation + Delta-G solvation = -38.042965 kcal Electronic energy + Delta-G solvation = -20762.803540 eV Core-core repulsion = 17408.312811 eV Total energy + Delta-G solvation = -3354.490729 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.063 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.72810 -39.46736 -38.50555 -35.44766 -34.54210 -31.88005 -31.04339 -29.17241 -28.14900 -26.40141 -24.89857 -22.92161 -22.66951 -20.13277 -19.05152 -18.17626 -17.07363 -16.86762 -15.78117 -15.49016 -15.41918 -14.96348 -14.51496 -14.31443 -14.19530 -13.71127 -13.34326 -13.27089 -12.81937 -12.44452 -12.23511 -12.13264 -11.90990 -11.55328 -11.48878 -11.34511 -11.16175 -10.95814 -10.77569 -10.56365 -10.24525 -9.88168 -9.28166 -9.25844 -8.64537 -7.95332 -7.80865 -7.08262 -6.73702 -4.49246 0.78655 1.43699 2.20336 2.36765 2.72208 2.99562 3.02983 3.03730 3.78649 3.82655 4.17065 4.47029 4.50959 4.75192 4.93978 5.07672 5.35390 5.45544 5.75998 5.84262 5.94435 6.11639 6.19884 6.21909 6.28743 6.38748 6.49221 6.56454 6.70760 6.91916 6.97424 7.01466 7.06816 7.14946 7.58730 7.99644 8.67752 9.16262 9.60178 10.25540 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.017374 B = 0.006345 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.233450 B = 4411.785091 C = 5904.670917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.061 4.061 3 C -0.176 4.176 4 C 0.528 3.472 5 O -0.588 6.588 6 N -0.433 5.433 7 C 0.117 3.883 8 C -0.345 4.345 9 H 0.105 0.895 10 C 0.063 3.937 11 N -0.836 5.836 12 Si 0.910 3.090 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.259 1.259 16 S 0.224 5.776 17 C -0.188 4.188 18 C -0.115 4.115 19 C 0.094 3.906 20 F -0.145 7.145 21 C -0.165 4.165 22 C -0.050 4.050 23 C -0.082 4.082 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.102 0.898 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.043 0.957 30 H 0.280 0.720 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.355 -8.878 -1.974 9.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.076 4.076 3 C -0.296 4.296 4 C 0.317 3.683 5 O -0.475 6.475 6 N -0.150 5.150 7 C -0.026 4.026 8 C -0.480 4.480 9 H 0.122 0.878 10 C -0.150 4.150 11 N -0.468 5.468 12 Si 0.734 3.266 13 H -0.189 1.189 14 H -0.201 1.201 15 H -0.183 1.183 16 S 0.501 5.499 17 C -0.303 4.303 18 C -0.138 4.138 19 C 0.072 3.928 20 F -0.124 7.124 21 C -0.186 4.186 22 C -0.070 4.070 23 C -0.091 4.091 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.121 0.879 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.221 -7.712 -1.753 8.002 hybrid contribution 0.041 -1.050 -0.117 1.057 sum 1.262 -8.761 -1.871 9.047 Atomic orbital electron populations 1.20784 0.89519 1.03658 1.02278 1.18739 0.97334 0.89737 1.01758 1.23699 0.97260 0.97735 1.10883 1.17262 0.86274 0.83007 0.81742 1.90578 1.14371 1.85543 1.57032 1.43256 1.07977 1.04246 1.59544 1.21341 0.96262 0.83563 1.01473 1.19471 0.81165 1.22168 1.25195 0.87828 1.25633 1.00727 0.95257 0.93401 1.69876 1.36399 1.22247 1.18282 0.86210 0.81149 0.79709 0.79543 1.18871 1.20067 1.18338 1.85857 1.02953 0.88820 1.72278 1.24633 0.96402 1.05040 1.04217 1.20269 0.99627 0.89546 1.04361 1.17473 0.87287 0.83581 1.04470 1.91460 1.69658 1.57083 1.94169 1.20450 0.91239 1.00134 1.06797 1.20622 0.99441 0.90229 0.96664 1.18091 0.91985 0.93583 1.05425 0.91852 0.93002 0.87922 0.92575 0.92069 0.93880 0.90995 0.85080 0.85130 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 9.31 36.01 0.34 -1.48 16 2 C -0.06 -1.20 5.86 -105.37 -0.62 -1.82 16 3 C -0.18 -3.86 6.15 -37.67 -0.23 -4.09 16 4 C 0.53 12.86 7.56 -12.81 -0.10 12.76 16 5 O -0.59 -14.87 13.52 5.18 0.07 -14.80 16 6 N -0.43 -10.58 2.91 -123.66 -0.36 -10.94 16 7 C 0.12 2.66 8.82 59.85 0.53 3.19 16 8 C -0.34 -8.15 6.72 -15.02 -0.10 -8.26 16 9 H 0.11 2.38 5.57 -34.73 -0.19 2.18 16 10 C 0.06 1.45 5.16 -17.45 -0.09 1.36 16 11 N -0.84 -20.27 11.74 55.50 0.65 -19.62 16 12 Si 0.91 17.76 29.56 -169.99 -5.03 12.73 16 13 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 14 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 15 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 16 S 0.22 4.49 18.58 -107.50 -2.00 2.49 16 17 C -0.19 -3.43 6.50 -38.30 -0.25 -3.68 16 18 C -0.12 -1.86 10.04 -39.21 -0.39 -2.25 16 19 C 0.09 1.42 7.29 -39.43 -0.29 1.14 16 20 F -0.14 -2.12 17.26 2.25 0.04 -2.08 16 21 C -0.16 -2.26 9.92 -40.07 -0.40 -2.66 16 22 C -0.05 -0.73 9.62 -39.14 -0.38 -1.11 16 23 C -0.08 -1.46 5.85 -107.12 -0.63 -2.09 16 24 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.05 0.75 7.34 -51.92 -0.38 0.37 16 26 H 0.10 2.05 5.59 -51.93 -0.29 1.76 16 27 H 0.06 1.33 7.72 -51.93 -0.40 0.93 16 28 H 0.06 1.35 7.73 -51.93 -0.40 0.95 16 29 H 0.04 0.93 7.49 -51.93 -0.39 0.54 16 30 H 0.28 6.36 8.31 -40.82 -0.34 6.02 16 31 H 0.13 1.89 8.06 -52.48 -0.42 1.46 16 32 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 33 H 0.13 1.55 7.41 -52.49 -0.39 1.16 16 LS Contribution 295.12 15.07 4.45 4.45 Total: -1.00 -26.27 295.12 -7.63 -33.89 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -2.85 Total: 2.85 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -2.60 Total: -8.98 kcal Atomic # 7 Polarization: -30.85 SS G_CDS: 0.29 Total: -30.56 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.07 Total: -14.80 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.08 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Atomic # 16 Polarization: 4.49 SS G_CDS: -2.00 Total: 2.49 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.27 -7.63 -33.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336271861.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.149 kcal (2) G-P(sol) polarization free energy of solvation -26.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds