Wall clock time and date at job start Tue Mar 31 2020 06:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86794 * 120.00125 * 2 1 4 4 H 1.48499 * 109.47059 * 239.99963 * 3 2 1 5 5 H 1.48505 * 109.46962 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47401 * 119.99716 * 3 2 1 7 7 C 1.38951 * 119.99536 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99252 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00532 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00030 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00072 * 4.85494 * 10 9 7 12 12 C 1.50701 * 120.00200 * 184.86391 * 10 9 7 13 13 C 1.50705 * 112.88206 * 294.28502 * 12 10 9 14 14 C 1.38255 * 119.99603 * 102.39766 * 13 12 10 15 15 C 1.38224 * 120.02470 * 179.72680 * 14 13 12 16 16 C 1.38233 * 120.01181 * 0.27393 * 15 14 13 17 17 C 1.38329 * 119.99055 * 0.02562 * 16 15 14 18 18 Cl 1.73599 * 120.01649 * 180.02562 * 17 16 15 19 19 C 1.38196 * 119.98595 * 282.67439 * 13 12 10 20 20 C 1.53847 * 113.74061 * 65.68945 * 12 10 9 21 21 C 1.51578 * 86.75314 * 89.70467 * 20 12 10 22 22 O 1.20765 * 135.77829 * 205.13562 * 21 20 12 23 23 C 1.51574 * 88.43887 * 25.15409 * 21 20 12 24 24 H 0.96995 * 119.99698 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99709 * 359.97438 * 9 7 2 26 26 H 1.07997 * 119.98612 * 359.97438 * 14 13 12 27 27 H 1.08000 * 119.98841 * 180.25218 * 15 14 13 28 28 H 1.08005 * 120.00571 * 179.97438 * 16 15 14 29 29 H 1.07993 * 120.01275 * 359.97415 * 19 13 12 30 30 H 1.08995 * 113.66511 * 204.16847 * 20 12 10 31 31 H 1.09001 * 113.66432 * 335.23538 * 20 12 10 32 32 H 1.09002 * 113.66848 * 220.38231 * 23 21 20 33 33 H 1.08999 * 113.66958 * 89.30989 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2069 -3.5597 0.0914 12 6 1.2479 -4.8607 -0.1091 13 6 0.3690 -5.1344 1.0842 14 6 -0.9953 -4.9274 0.9997 15 6 -1.8027 -5.1836 2.0920 16 6 -1.2456 -5.6416 3.2713 17 6 0.1201 -5.8430 3.3584 18 17 0.8204 -6.4188 4.8388 19 6 0.9279 -5.5868 2.2644 20 6 0.5340 -5.0520 -1.4584 21 6 1.8149 -5.6989 -1.9465 22 8 2.3482 -5.8626 -3.0176 23 6 2.1361 -6.0518 -0.5078 24 1 -0.4849 0.8400 -0.0004 25 1 0.3533 -2.3907 0.0005 26 1 -1.4309 -4.5692 0.0786 27 1 -2.8689 -5.0256 2.0240 28 1 -1.8765 -5.8414 4.1248 29 1 1.9941 -5.7446 2.3315 30 1 -0.3123 -5.7372 -1.4123 31 1 0.2962 -4.1161 -1.9640 32 1 3.1867 -5.9201 -0.2490 33 1 1.7391 -7.0176 -0.1951 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336427641.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:53 Heat of formation + Delta-G solvation = -31.350471 kcal Electronic energy + Delta-G solvation = -20884.290273 eV Core-core repulsion = 17515.673257 eV Total energy + Delta-G solvation = -3368.617017 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.85017 -38.82365 -37.90414 -36.47661 -35.58992 -34.06933 -31.39037 -30.96041 -30.52568 -26.20811 -25.91684 -24.15839 -22.44471 -21.66312 -19.91809 -18.40574 -17.85043 -17.29140 -16.23927 -15.65693 -15.50722 -15.04461 -14.87707 -14.67851 -14.40537 -14.07100 -13.63970 -13.54488 -13.31150 -12.85480 -12.42410 -12.30800 -11.77723 -11.61635 -11.54258 -11.39006 -11.26685 -11.12564 -10.72451 -10.67462 -10.51609 -10.30554 -9.63348 -9.24412 -9.06820 -8.71842 -8.35731 -8.10935 -6.54419 -3.95218 1.19543 1.31080 2.09251 2.16961 3.11544 3.20355 3.24492 3.53759 3.70213 4.02888 4.08198 4.36986 4.68531 4.74063 4.86548 4.96600 5.10561 5.20029 5.27542 5.44958 5.50607 5.55223 5.67518 5.78493 5.86906 5.95462 6.11536 6.22105 6.27957 6.37228 6.55544 6.82215 7.43713 7.67445 7.90484 8.43803 9.02873 9.37199 9.86371 10.62267 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.005987 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.930633 B = 4675.902652 C = 5881.476023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.028 3.972 3 Si 0.932 3.068 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.305 4.305 8 H 0.105 0.895 9 N -0.543 5.543 10 C 0.454 3.546 11 O -0.585 6.585 12 C -0.046 4.046 13 C -0.040 4.040 14 C -0.105 4.105 15 C -0.104 4.104 16 C -0.116 4.116 17 C -0.032 4.032 18 Cl -0.077 7.077 19 C -0.095 4.095 20 C -0.183 4.183 21 C 0.371 3.629 22 O -0.429 6.429 23 C -0.168 4.168 24 H 0.275 0.725 25 H 0.394 0.606 26 H 0.133 0.867 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.700 -11.706 4.517 14.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.175 4.175 3 Si 0.758 3.242 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.176 5.176 10 C 0.239 3.761 11 O -0.470 6.470 12 C -0.050 4.050 13 C -0.041 4.041 14 C -0.123 4.123 15 C -0.122 4.122 16 C -0.135 4.135 17 C -0.058 4.058 18 Cl -0.049 7.049 19 C -0.113 4.113 20 C -0.221 4.221 21 C 0.245 3.755 22 O -0.300 6.300 23 C -0.206 4.206 24 H 0.085 0.915 25 H 0.228 0.772 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.148 0.852 29 H 0.153 0.847 30 H 0.142 0.858 31 H 0.121 0.879 32 H 0.130 0.870 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.679 -11.642 4.111 13.590 hybrid contribution -0.242 0.994 0.413 1.103 sum -5.921 -10.648 4.524 12.996 Atomic orbital electron populations 1.69597 1.05974 1.28620 1.49182 1.25295 0.95663 0.99857 0.96677 0.85899 0.78864 0.80172 0.79258 1.19713 1.20795 1.19728 1.19711 0.93468 0.82023 1.48219 0.87746 1.41754 1.09341 1.04316 1.62234 1.18865 0.87554 0.83631 0.86055 1.90549 1.13634 1.86361 1.56445 1.20429 0.95971 0.96362 0.92268 1.19255 0.93247 0.97965 0.93618 1.21188 0.92737 0.98879 0.99544 1.21053 1.00177 0.98702 0.92242 1.21010 0.92848 1.00740 0.98885 1.20838 0.93501 1.03477 0.88024 1.98358 1.84706 1.87408 1.34379 1.20902 1.00404 0.99014 0.91016 1.24215 0.99153 1.03736 0.94980 1.25374 0.87281 0.73828 0.89010 1.90388 1.61842 1.48313 1.29422 1.23957 1.03730 0.98021 0.94869 0.91547 0.77197 0.84896 0.84975 0.85219 0.84672 0.85811 0.87896 0.87047 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.31 13.05 55.50 0.72 -22.59 16 2 C 0.03 0.73 5.50 -17.46 -0.10 0.63 16 3 Si 0.93 20.55 29.55 -169.99 -5.02 15.52 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 8 H 0.10 2.97 7.17 -52.48 -0.38 2.59 16 9 N -0.54 -13.20 5.28 -10.96 -0.06 -13.25 16 10 C 0.45 10.26 6.41 -10.99 -0.07 10.19 16 11 O -0.58 -15.36 15.53 5.54 0.09 -15.27 16 12 C -0.05 -0.76 0.92 -156.02 -0.14 -0.91 16 13 C -0.04 -0.59 4.82 -104.63 -0.50 -1.09 16 14 C -0.11 -1.34 9.02 -39.58 -0.36 -1.70 16 15 C -0.10 -1.17 10.05 -39.59 -0.40 -1.57 16 16 C -0.12 -1.37 9.83 -39.55 -0.39 -1.76 16 17 C -0.03 -0.43 6.32 -39.50 -0.25 -0.68 16 18 Cl -0.08 -0.97 28.96 -51.86 -1.50 -2.47 16 19 C -0.09 -1.39 9.17 -39.54 -0.36 -1.75 16 20 C -0.18 -2.57 6.19 -27.01 -0.17 -2.74 16 21 C 0.37 6.10 8.86 -28.26 -0.25 5.85 16 22 O -0.43 -8.28 17.99 5.99 0.11 -8.17 16 23 C -0.17 -2.48 6.72 -27.02 -0.18 -2.66 16 24 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 25 H 0.39 9.13 7.90 -40.82 -0.32 8.81 16 26 H 0.13 1.49 7.05 -52.49 -0.37 1.12 16 27 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 29 H 0.14 2.02 8.03 -52.49 -0.42 1.60 16 30 H 0.12 1.27 7.45 -51.93 -0.39 0.88 16 31 H 0.10 1.56 8.09 -51.93 -0.42 1.14 16 32 H 0.11 1.84 7.34 -51.93 -0.38 1.46 16 33 H 0.12 1.33 8.09 -51.93 -0.42 0.91 16 LS Contribution 310.72 15.07 4.68 4.68 Total: -1.00 -31.08 310.72 -7.37 -38.46 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -3.08 Total: 9.68 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -3.31 Total: -6.58 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.67 Total: -35.84 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.19 Total: -23.44 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.08 -7.37 -38.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336427641.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.105 kcal (2) G-P(sol) polarization free energy of solvation -31.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds