Wall clock time and date at job start Tue Mar 31 2020 06:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86794 * 120.00125 * 2 1 4 4 H 1.48499 * 109.47059 * 239.99963 * 3 2 1 5 5 H 1.48505 * 109.46962 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47401 * 119.99716 * 3 2 1 7 7 C 1.38951 * 119.99536 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99252 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00532 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00030 * 180.02562 * 9 7 2 11 11 O 1.21297 * 120.00072 * 4.85494 * 10 9 7 12 12 C 1.50701 * 120.00200 * 184.86391 * 10 9 7 13 13 C 1.50705 * 112.88206 * 294.28502 * 12 10 9 14 14 C 1.38255 * 119.99603 * 102.39766 * 13 12 10 15 15 C 1.38224 * 120.02470 * 179.72680 * 14 13 12 16 16 C 1.38233 * 120.01181 * 0.27393 * 15 14 13 17 17 C 1.38329 * 119.99055 * 0.02562 * 16 15 14 18 18 Cl 1.73599 * 120.01649 * 180.02562 * 17 16 15 19 19 C 1.38196 * 119.98595 * 282.67439 * 13 12 10 20 20 C 1.53847 * 113.74061 * 65.68945 * 12 10 9 21 21 C 1.51578 * 86.75314 * 89.70467 * 20 12 10 22 22 O 1.20765 * 135.77829 * 205.13562 * 21 20 12 23 23 C 1.51574 * 88.43887 * 25.15409 * 21 20 12 24 24 H 0.96995 * 119.99698 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99709 * 359.97438 * 9 7 2 26 26 H 1.07997 * 119.98612 * 359.97438 * 14 13 12 27 27 H 1.08000 * 119.98841 * 180.25218 * 15 14 13 28 28 H 1.08005 * 120.00571 * 179.97438 * 16 15 14 29 29 H 1.07993 * 120.01275 * 359.97415 * 19 13 12 30 30 H 1.08995 * 113.66511 * 204.16847 * 20 12 10 31 31 H 1.09001 * 113.66432 * 335.23538 * 20 12 10 32 32 H 1.09002 * 113.66848 * 220.38231 * 23 21 20 33 33 H 1.08999 * 113.66958 * 89.30989 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7464 -0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2069 -3.5597 0.0914 12 6 1.2479 -4.8607 -0.1091 13 6 0.3690 -5.1344 1.0842 14 6 -0.9953 -4.9274 0.9997 15 6 -1.8027 -5.1836 2.0920 16 6 -1.2456 -5.6416 3.2713 17 6 0.1201 -5.8430 3.3584 18 17 0.8204 -6.4188 4.8388 19 6 0.9279 -5.5868 2.2644 20 6 0.5340 -5.0520 -1.4584 21 6 1.8149 -5.6989 -1.9465 22 8 2.3482 -5.8626 -3.0176 23 6 2.1361 -6.0518 -0.5078 24 1 -0.4849 0.8400 -0.0004 25 1 0.3533 -2.3907 0.0005 26 1 -1.4309 -4.5692 0.0786 27 1 -2.8689 -5.0256 2.0240 28 1 -1.8765 -5.8414 4.1248 29 1 1.9941 -5.7446 2.3315 30 1 -0.3123 -5.7372 -1.4123 31 1 0.2962 -4.1161 -1.9640 32 1 3.1867 -5.9201 -0.2490 33 1 1.7391 -7.0176 -0.1951 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336427641.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:52 Heat of formation + Delta-G solvation = -50.427739 kcal Electronic energy + Delta-G solvation = -20885.117526 eV Core-core repulsion = 17515.673257 eV Total energy + Delta-G solvation = -3369.444269 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.061 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.19291 -39.94322 -39.56676 -37.58498 -36.91896 -36.01776 -33.32447 -31.98678 -31.56571 -27.82664 -27.22783 -25.67037 -23.47066 -22.95841 -21.34838 -20.21876 -19.45083 -18.50996 -17.61440 -16.97815 -16.75109 -16.60782 -16.12326 -15.92313 -15.85282 -15.80144 -15.16613 -14.81537 -14.57106 -14.26576 -13.71414 -13.47651 -13.40523 -13.00558 -12.94459 -12.68046 -12.48561 -12.46465 -12.26871 -12.15762 -11.90458 -11.73041 -11.56561 -10.65926 -10.48318 -10.08514 -9.80584 -9.59293 -8.52133 -6.00890 0.19282 0.30764 0.81121 1.16873 1.35352 1.40210 1.49951 1.87984 2.24953 2.62518 2.76820 2.96612 3.12151 3.28878 3.60201 3.66701 3.98063 4.14797 4.19804 4.24711 4.36377 4.49954 4.51186 4.63796 4.75727 4.86731 4.90118 4.97221 5.28192 5.36786 5.41224 5.52934 5.86438 5.92591 6.37972 6.50435 7.04662 7.45765 7.99767 8.64102 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.005987 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.930633 B = 4675.902652 C = 5881.476023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.002 4.002 3 Si 0.988 3.012 4 H -0.273 1.273 5 H -0.266 1.266 6 H -0.274 1.274 7 C -0.342 4.342 8 H 0.077 0.923 9 N -0.550 5.550 10 C 0.452 3.548 11 O -0.630 6.630 12 C -0.043 4.043 13 C -0.054 4.054 14 C -0.106 4.106 15 C -0.096 4.096 16 C -0.111 4.111 17 C -0.043 4.043 18 Cl -0.076 7.076 19 C -0.112 4.112 20 C -0.162 4.162 21 C 0.360 3.640 22 O -0.466 6.466 23 C -0.158 4.158 24 H 0.281 0.719 25 H 0.400 0.600 26 H 0.151 0.849 27 H 0.167 0.833 28 H 0.154 0.846 29 H 0.120 0.880 30 H 0.175 0.825 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.350 -12.160 5.109 16.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.204 4.204 3 Si 0.811 3.189 4 H -0.198 1.198 5 H -0.190 1.190 6 H -0.199 1.199 7 C -0.471 4.471 8 H 0.095 0.905 9 N -0.185 5.185 10 C 0.239 3.761 11 O -0.518 6.518 12 C -0.047 4.047 13 C -0.054 4.054 14 C -0.124 4.124 15 C -0.114 4.114 16 C -0.129 4.129 17 C -0.070 4.070 18 Cl -0.047 7.047 19 C -0.131 4.131 20 C -0.200 4.200 21 C 0.237 3.763 22 O -0.340 6.340 23 C -0.195 4.195 24 H 0.090 0.910 25 H 0.234 0.766 26 H 0.169 0.831 27 H 0.185 0.815 28 H 0.172 0.828 29 H 0.138 0.862 30 H 0.193 0.807 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -8.363 -12.104 4.717 15.450 hybrid contribution 0.579 1.085 0.307 1.268 sum -7.783 -11.019 5.024 14.396 Atomic orbital electron populations 1.69633 1.06580 1.29640 1.48845 1.25967 0.96558 1.02125 0.95743 0.85071 0.77983 0.76942 0.78893 1.19797 1.19037 1.19907 1.19638 0.92724 0.83966 1.50792 0.90470 1.41754 1.09444 1.04266 1.62990 1.19921 0.87411 0.85288 0.83469 1.90514 1.16054 1.87568 1.57670 1.20103 0.96683 0.93137 0.94756 1.19078 0.93885 0.99827 0.92650 1.21457 0.91848 0.98152 1.00954 1.21460 1.01738 0.96993 0.91195 1.21381 0.92243 0.99319 0.99991 1.20969 0.94260 1.03922 0.87800 1.98357 1.84876 1.87384 1.34074 1.20883 1.00031 1.00230 0.91911 1.24263 0.99398 1.04086 0.92221 1.25899 0.88175 0.73242 0.88992 1.90370 1.62964 1.49929 1.30728 1.24052 1.02436 0.99467 0.93585 0.90955 0.76585 0.83090 0.81534 0.82789 0.86160 0.80731 0.88819 0.89373 0.81949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.73 13.05 21.66 0.28 -46.45 16 2 C 0.00 -0.12 5.50 84.93 0.47 0.34 16 3 Si 0.99 42.08 29.55 68.60 2.03 44.10 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.34 -19.05 9.68 84.04 0.81 -18.24 16 8 H 0.08 4.63 7.17 -2.91 -0.02 4.61 16 9 N -0.55 -27.30 5.28 -306.98 -1.62 -28.92 16 10 C 0.45 20.98 6.41 87.66 0.56 21.54 16 11 O -0.63 -34.76 15.53 -3.08 -0.05 -34.80 16 12 C -0.04 -1.39 0.92 -53.16 -0.05 -1.44 16 13 C -0.05 -1.48 4.82 -19.87 -0.10 -1.57 16 14 C -0.11 -2.34 9.02 22.27 0.20 -2.14 16 15 C -0.10 -1.77 10.05 22.27 0.22 -1.54 16 16 C -0.11 -2.23 9.83 22.29 0.22 -2.01 16 17 C -0.04 -1.07 6.32 22.33 0.14 -0.93 16 18 Cl -0.08 -1.80 28.96 -2.72 -0.08 -1.88 16 19 C -0.11 -3.18 9.17 22.29 0.20 -2.98 16 20 C -0.16 -4.25 6.19 30.41 0.19 -4.06 16 21 C 0.36 11.66 8.86 29.60 0.26 11.93 16 22 O -0.47 -18.24 17.99 -1.46 -0.03 -18.26 16 23 C -0.16 -4.56 6.72 30.41 0.20 -4.36 16 24 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 25 H 0.40 18.53 7.90 -92.71 -0.73 17.80 16 26 H 0.15 2.74 7.05 -2.91 -0.02 2.72 16 27 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 28 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.12 3.68 8.03 -2.91 -0.02 3.66 16 30 H 0.18 2.79 7.45 -2.39 -0.02 2.77 16 31 H 0.09 2.72 8.09 -2.39 -0.02 2.70 16 32 H 0.09 3.02 7.34 -2.39 -0.02 3.00 16 33 H 0.16 3.23 8.09 -2.39 -0.02 3.21 16 Total: -1.00 -70.23 310.72 4.31 -65.93 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.43 Total: 25.75 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 3.34 Total: -5.46 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -1.34 Total: -75.37 kcal Atomic # 8 Polarization: -52.99 SS G_CDS: -0.07 Total: -53.07 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.08 Total: -1.88 kcal Total: -70.23 4.31 -65.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336427641.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.498 kcal (2) G-P(sol) polarization free energy of solvation -70.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds