Wall clock time and date at job start Tue Mar 31 2020 06:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86799 * 120.00142 * 2 1 4 4 H 1.48501 * 109.47185 * 270.00200 * 3 2 1 5 5 H 1.48510 * 109.47130 * 29.99812 * 3 2 1 6 6 H 1.48495 * 109.47549 * 149.99646 * 3 2 1 7 7 C 1.39862 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00417 * 190.98998 * 7 2 1 9 9 C 1.41139 * 119.99962 * 10.98608 * 7 2 1 10 10 C 1.40882 * 120.15845 * 208.89365 * 9 7 2 11 11 C 1.36338 * 119.84038 * 180.02562 * 10 9 7 12 12 C 1.39571 * 120.15745 * 0.02562 * 11 10 9 13 13 N 1.38861 * 119.83874 * 179.97438 * 12 11 10 14 14 S 1.65603 * 119.99850 * 104.47468 * 13 12 11 15 15 O 1.42106 * 106.39675 * 182.93955 * 14 13 12 16 16 O 1.42102 * 106.40344 * 50.02611 * 14 13 12 17 17 C 1.76199 * 107.21843 * 296.48131 * 14 13 12 18 18 C 1.41374 * 126.58030 * 85.52839 * 17 14 13 19 19 C 1.34510 * 106.84415 * 179.73560 * 18 17 14 20 20 O 1.34308 * 108.41766 * 0.26183 * 19 18 17 21 21 C 1.34303 * 109.47827 * 0.02562 * 20 19 18 22 22 C 1.39567 * 120.31596 * 0.25221 * 12 11 10 23 23 C 1.36343 * 120.15937 * 359.48566 * 22 12 11 24 24 H 0.97003 * 119.99394 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.08137 * 0.02562 * 10 9 7 26 26 H 1.07994 * 119.92244 * 179.97438 * 11 10 9 27 27 H 0.96991 * 119.99868 * 284.46947 * 13 12 11 28 28 H 1.08007 * 126.58084 * 359.97438 * 18 17 14 29 29 H 1.07997 * 125.79373 * 180.22510 * 19 18 17 30 30 H 1.07996 * 125.79513 * 179.97438 * 21 20 19 31 31 H 1.08003 * 119.91905 * 179.72768 * 22 12 11 32 32 H 1.07996 * 120.07648 * 180.23506 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0464 -1.4001 5 1 1.4405 2.6527 0.7000 6 1 3.5406 1.4402 0.7001 7 6 2.0084 -1.2112 0.0005 8 1 3.0735 -1.2198 0.1788 9 6 1.3221 -2.4224 -0.2319 10 6 1.7959 -3.6237 0.3313 11 6 1.1282 -4.7901 0.1021 12 6 -0.0219 -4.7960 -0.6886 13 7 -0.6965 -5.9878 -0.9181 14 16 -2.1167 -6.3011 -0.1261 15 8 -2.5147 -7.6078 -0.5180 16 8 -2.9360 -5.1535 -0.3023 17 6 -1.7462 -6.3887 1.5942 18 6 -1.6746 -5.3030 2.4970 19 6 -1.3719 -5.8177 3.7023 20 8 -1.2515 -7.1495 3.5769 21 6 -1.4732 -7.5010 2.2998 22 6 -0.4938 -3.6107 -1.2545 23 6 0.1608 -2.4360 -1.0294 24 1 -0.4849 0.8401 0.0004 25 1 2.6860 -3.6207 0.9431 26 1 1.4905 -5.7118 0.5328 27 1 -0.3359 -6.6367 -1.5423 28 1 -1.8360 -4.2608 2.2643 29 1 -1.2465 -5.2554 4.6158 30 1 -1.4427 -8.5065 1.9070 31 1 -1.3819 -3.6233 -1.8689 32 1 -0.2077 -1.5190 -1.4648 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336472912.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:56 Heat of formation + Delta-G solvation = -38.575906 kcal Electronic energy + Delta-G solvation = -20913.991673 eV Core-core repulsion = 17547.105044 eV Total energy + Delta-G solvation = -3366.886629 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.54589 -38.03270 -36.71169 -35.40361 -34.78777 -33.09267 -32.83741 -29.64754 -29.59060 -28.77411 -24.78268 -22.52172 -21.63281 -21.11230 -20.90309 -19.08668 -18.20174 -17.44576 -17.20084 -16.57145 -15.95861 -15.59555 -15.28590 -14.74513 -14.29783 -14.03214 -13.67618 -12.88343 -12.77321 -12.64674 -12.37183 -12.15399 -11.71981 -11.66868 -11.57805 -11.45916 -11.23301 -11.01473 -10.81711 -10.60281 -10.29567 -10.12360 -9.82032 -9.36654 -8.88306 -8.73279 -7.67786 -7.37623 -6.86570 -4.51331 0.83452 1.51372 2.38140 2.57977 2.99310 3.00996 3.03114 3.03775 3.07973 3.61726 3.83237 4.14795 4.48583 4.58212 4.79033 5.31770 5.47587 5.51152 5.91946 5.99687 6.11463 6.27668 6.32179 6.43726 6.85211 6.90915 6.93064 7.07924 7.16463 7.37772 7.48848 7.82740 7.92452 8.05504 8.13995 8.49704 8.73020 8.82419 10.06199 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.022370 B = 0.004901 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.392575 B = 5711.999871 C = 6195.875457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.071 3.929 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.451 4.451 8 H 0.080 0.920 9 C 0.119 3.881 10 C -0.222 4.222 11 C -0.072 4.072 12 C -0.029 4.029 13 N -1.031 6.031 14 S 2.702 3.298 15 O -0.986 6.986 16 O -0.950 6.950 17 C -0.746 4.746 18 C -0.118 4.118 19 C -0.056 4.056 20 O -0.172 6.172 21 C 0.085 3.915 22 C -0.076 4.076 23 C -0.159 4.159 24 H 0.284 0.716 25 H 0.096 0.904 26 H 0.090 0.910 27 H 0.406 0.594 28 H 0.164 0.836 29 H 0.209 0.791 30 H 0.217 0.783 31 H 0.099 0.901 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.723 -8.181 3.745 9.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.480 4.480 8 H 0.098 0.902 9 C 0.116 3.884 10 C -0.242 4.242 11 C -0.094 4.094 12 C -0.125 4.125 13 N -0.786 5.786 14 S 2.792 3.208 15 O -0.976 6.976 16 O -0.940 6.940 17 C -0.832 4.832 18 C -0.137 4.137 19 C -0.123 4.123 20 O -0.066 6.066 21 C 0.012 3.988 22 C -0.097 4.097 23 C -0.180 4.180 24 H 0.095 0.905 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.243 0.757 28 H 0.182 0.818 29 H 0.226 0.774 30 H 0.234 0.766 31 H 0.117 0.883 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.810 -8.247 3.805 9.261 hybrid contribution 0.935 0.693 0.354 1.217 sum -0.874 -7.554 4.159 8.667 Atomic orbital electron populations 1.69830 1.07465 1.29562 1.34326 1.25978 0.94902 1.01517 0.92329 0.86212 0.80305 0.80242 0.79408 1.19179 1.20175 1.18588 1.19647 0.96189 0.90569 1.41623 0.90150 1.17760 0.91141 0.92104 0.87389 1.20667 1.03375 0.93155 1.07018 1.20467 0.94889 0.96829 0.97183 1.16614 0.99809 0.84049 1.12068 1.52199 1.43985 1.26631 1.55740 1.02073 0.73422 0.72867 0.72463 1.93514 1.81557 1.40418 1.82148 1.93575 1.65079 1.50687 1.84630 1.32205 1.23730 0.99616 1.27657 1.21511 1.01330 0.99866 0.91036 1.24190 1.07269 0.79872 1.00923 1.84039 1.67891 1.25445 1.29216 1.23997 0.94751 0.99250 0.80779 1.20776 0.98351 0.92522 0.98044 1.21042 0.98700 0.96555 1.01660 0.90528 0.88610 0.89200 0.75688 0.81847 0.77436 0.76636 0.88276 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.38 10.86 55.54 0.60 -18.77 16 2 C 0.07 1.69 5.24 -17.34 -0.09 1.60 16 3 Si 0.91 17.66 29.57 -169.99 -5.03 12.63 16 4 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.59 16 7 C -0.45 -11.14 9.04 -37.87 -0.34 -11.49 16 8 H 0.08 1.90 7.87 -52.49 -0.41 1.48 16 9 C 0.12 2.97 5.55 -106.80 -0.59 2.37 16 10 C -0.22 -5.00 9.74 -39.27 -0.38 -5.38 16 11 C -0.07 -1.48 9.90 -39.77 -0.39 -1.88 16 12 C -0.03 -0.60 5.78 -83.69 -0.48 -1.09 16 13 N -1.03 -17.66 5.65 32.51 0.18 -17.48 16 14 S 2.70 47.25 5.86 -107.50 -0.63 46.62 16 15 O -0.99 -17.57 17.83 -57.17 -1.02 -18.59 16 16 O -0.95 -20.07 17.01 -57.17 -0.97 -21.04 16 17 C -0.75 -12.02 6.13 -39.70 -0.24 -12.27 16 18 C -0.12 -1.93 10.79 -39.71 -0.43 -2.36 16 19 C -0.06 -0.75 12.09 29.41 0.36 -0.40 16 20 O -0.17 -2.32 10.65 5.70 0.06 -2.26 16 21 C 0.08 1.13 11.82 29.42 0.35 1.48 16 22 C -0.08 -1.73 9.23 -39.77 -0.37 -2.10 16 23 C -0.16 -3.95 8.60 -39.26 -0.34 -4.28 16 24 H 0.28 6.37 8.30 -40.82 -0.34 6.04 16 25 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 26 H 0.09 1.63 8.06 -52.49 -0.42 1.20 16 27 H 0.41 5.77 8.95 -34.47 -0.31 5.46 16 28 H 0.16 2.83 8.06 -52.48 -0.42 2.41 16 29 H 0.21 1.98 8.06 -52.49 -0.42 1.56 16 30 H 0.22 2.05 8.06 -52.49 -0.42 1.63 16 31 H 0.10 2.20 7.96 -52.48 -0.42 1.78 16 32 H 0.12 3.17 6.23 -52.49 -0.33 2.85 16 LS Contribution 302.27 15.07 4.56 4.56 Total: -1.00 -30.35 302.27 -7.92 -38.27 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -2.71 Total: 11.83 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: -2.96 Total: -35.78 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.79 Total: -36.25 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -1.93 Total: -41.89 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -5.03 Total: 12.63 kcal Atomic # 16 Polarization: 47.25 SS G_CDS: -0.63 Total: 46.62 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -30.35 -7.92 -38.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336472912.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.301 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds