Wall clock time and date at job start Tue Mar 31 2020 06:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86799 * 120.00142 * 2 1 4 4 H 1.48501 * 109.47185 * 270.00200 * 3 2 1 5 5 H 1.48510 * 109.47130 * 29.99812 * 3 2 1 6 6 H 1.48495 * 109.47549 * 149.99646 * 3 2 1 7 7 C 1.39862 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00417 * 190.98998 * 7 2 1 9 9 C 1.41139 * 119.99962 * 10.98608 * 7 2 1 10 10 C 1.40882 * 120.15845 * 208.89365 * 9 7 2 11 11 C 1.36338 * 119.84038 * 180.02562 * 10 9 7 12 12 C 1.39571 * 120.15745 * 0.02562 * 11 10 9 13 13 N 1.38861 * 119.83874 * 179.97438 * 12 11 10 14 14 S 1.65603 * 119.99850 * 104.47468 * 13 12 11 15 15 O 1.42106 * 106.39675 * 182.93955 * 14 13 12 16 16 O 1.42102 * 106.40344 * 50.02611 * 14 13 12 17 17 C 1.76199 * 107.21843 * 296.48131 * 14 13 12 18 18 C 1.41374 * 126.58030 * 85.52839 * 17 14 13 19 19 C 1.34510 * 106.84415 * 179.73560 * 18 17 14 20 20 O 1.34308 * 108.41766 * 0.26183 * 19 18 17 21 21 C 1.34303 * 109.47827 * 0.02562 * 20 19 18 22 22 C 1.39567 * 120.31596 * 0.25221 * 12 11 10 23 23 C 1.36343 * 120.15937 * 359.48566 * 22 12 11 24 24 H 0.97003 * 119.99394 * 359.97438 * 1 2 3 25 25 H 1.08004 * 120.08137 * 0.02562 * 10 9 7 26 26 H 1.07994 * 119.92244 * 179.97438 * 11 10 9 27 27 H 0.96991 * 119.99868 * 284.46947 * 13 12 11 28 28 H 1.08007 * 126.58084 * 359.97438 * 18 17 14 29 29 H 1.07997 * 125.79373 * 180.22510 * 19 18 17 30 30 H 1.07996 * 125.79513 * 179.97438 * 21 20 19 31 31 H 1.08003 * 119.91905 * 179.72768 * 22 12 11 32 32 H 1.07996 * 120.07648 * 180.23506 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0464 -1.4001 5 1 1.4405 2.6527 0.7000 6 1 3.5406 1.4402 0.7001 7 6 2.0084 -1.2112 0.0005 8 1 3.0735 -1.2198 0.1788 9 6 1.3221 -2.4224 -0.2319 10 6 1.7959 -3.6237 0.3313 11 6 1.1282 -4.7901 0.1021 12 6 -0.0219 -4.7960 -0.6886 13 7 -0.6965 -5.9878 -0.9181 14 16 -2.1167 -6.3011 -0.1261 15 8 -2.5147 -7.6078 -0.5180 16 8 -2.9360 -5.1535 -0.3023 17 6 -1.7462 -6.3887 1.5942 18 6 -1.6746 -5.3030 2.4970 19 6 -1.3719 -5.8177 3.7023 20 8 -1.2515 -7.1495 3.5769 21 6 -1.4732 -7.5010 2.2998 22 6 -0.4938 -3.6107 -1.2545 23 6 0.1608 -2.4360 -1.0294 24 1 -0.4849 0.8401 0.0004 25 1 2.6860 -3.6207 0.9431 26 1 1.4905 -5.7118 0.5328 27 1 -0.3359 -6.6367 -1.5423 28 1 -1.8360 -4.2608 2.2643 29 1 -1.2465 -5.2554 4.6158 30 1 -1.4427 -8.5065 1.9070 31 1 -1.3819 -3.6233 -1.8689 32 1 -0.2077 -1.5190 -1.4648 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336472912.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:56 Heat of formation + Delta-G solvation = -59.367574 kcal Electronic energy + Delta-G solvation = -20914.893267 eV Core-core repulsion = 17547.105044 eV Total energy + Delta-G solvation = -3367.788223 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.055 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.64957 -39.77084 -38.21444 -36.92588 -36.46645 -34.53810 -34.24350 -31.42113 -30.72168 -30.52428 -26.55222 -23.73368 -22.89921 -22.75699 -22.62399 -20.40563 -19.47253 -19.24727 -18.66974 -18.12808 -17.10597 -17.06714 -16.74949 -16.20671 -15.73220 -15.46660 -15.32711 -14.57553 -14.01196 -13.95370 -13.91318 -13.79856 -13.35825 -13.24099 -13.20342 -13.08027 -12.83084 -12.47166 -12.37544 -12.29105 -11.79269 -11.59352 -11.48080 -11.10177 -10.50602 -9.84655 -9.47767 -9.16614 -8.62089 -6.36819 -0.57733 0.41272 0.86245 1.18186 1.19530 1.41714 1.51490 1.54961 1.99120 2.21495 2.24734 2.71464 2.77697 3.29538 3.68793 3.83275 4.03292 4.41365 4.46675 4.49596 4.66985 4.75312 4.95922 5.08162 5.13883 5.25502 5.31013 5.37826 5.69061 5.80338 5.85067 6.05767 6.10475 6.30022 6.42137 6.68442 6.91036 7.01849 8.33196 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.022370 B = 0.004901 C = 0.004518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.392575 B = 5711.999871 C = 6195.875457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.031 3.969 3 Si 0.986 3.014 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.485 4.485 8 H 0.083 0.917 9 C 0.091 3.909 10 C -0.228 4.228 11 C -0.066 4.066 12 C -0.010 4.010 13 N -1.027 6.027 14 S 2.725 3.275 15 O -0.985 6.985 16 O -0.993 6.993 17 C -0.772 4.772 18 C -0.161 4.161 19 C -0.033 4.033 20 O -0.166 6.166 21 C 0.109 3.891 22 C -0.089 4.089 23 C -0.181 4.181 24 H 0.288 0.712 25 H 0.109 0.891 26 H 0.124 0.876 27 H 0.423 0.577 28 H 0.140 0.860 29 H 0.245 0.755 30 H 0.257 0.743 31 H 0.097 0.903 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 -10.101 5.103 11.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.184 4.184 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.514 4.514 8 H 0.102 0.898 9 C 0.088 3.912 10 C -0.248 4.248 11 C -0.087 4.087 12 C -0.106 4.106 13 N -0.784 5.784 14 S 2.817 3.183 15 O -0.975 6.975 16 O -0.983 6.983 17 C -0.862 4.862 18 C -0.181 4.181 19 C -0.100 4.100 20 O -0.059 6.059 21 C 0.036 3.964 22 C -0.110 4.110 23 C -0.201 4.201 24 H 0.099 0.901 25 H 0.127 0.873 26 H 0.142 0.858 27 H 0.263 0.737 28 H 0.158 0.842 29 H 0.261 0.739 30 H 0.273 0.727 31 H 0.115 0.885 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.871 -10.180 5.120 11.429 hybrid contribution 0.549 1.053 -0.025 1.187 sum -0.322 -9.128 5.095 10.458 Atomic orbital electron populations 1.69910 1.08985 1.30612 1.35574 1.26816 0.95546 1.04691 0.91336 0.85138 0.79012 0.75748 0.79440 1.18830 1.19606 1.17861 1.19893 0.96509 0.91498 1.43509 0.89844 1.18067 0.91589 0.93427 0.88133 1.20877 1.03937 0.93089 1.06928 1.20723 0.94159 0.97522 0.96336 1.16558 0.99403 0.84306 1.10291 1.52048 1.43575 1.25889 1.56838 1.00910 0.72593 0.71935 0.72846 1.93512 1.81447 1.39879 1.82707 1.93532 1.66514 1.52541 1.85732 1.31860 1.26795 1.01021 1.26514 1.21494 1.04516 0.99225 0.92844 1.24761 1.04378 0.79796 1.01048 1.84098 1.67366 1.25277 1.29114 1.24723 0.91569 0.99932 0.80170 1.20906 0.98372 0.93192 0.98575 1.20950 0.99759 0.96510 1.02903 0.90115 0.87335 0.85776 0.73749 0.84188 0.73871 0.72688 0.88464 0.87942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.41 10.86 21.82 0.24 -42.17 16 2 C 0.03 1.51 5.24 85.22 0.45 1.95 16 3 Si 0.99 36.74 29.57 68.60 2.03 38.77 16 4 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 5 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 6 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 7 C -0.48 -24.68 9.04 23.38 0.21 -24.47 16 8 H 0.08 4.02 7.87 -2.91 -0.02 4.00 16 9 C 0.09 4.65 5.55 -21.27 -0.12 4.53 16 10 C -0.23 -10.22 9.74 22.47 0.22 -10.00 16 11 C -0.07 -2.62 9.90 22.15 0.22 -2.40 16 12 C -0.01 -0.39 5.78 38.67 0.22 -0.16 16 13 N -1.03 -33.61 5.65 -51.06 -0.29 -33.90 16 14 S 2.72 92.04 5.86 -56.49 -0.33 91.71 16 15 O -0.99 -32.79 17.83 -128.00 -2.28 -35.08 16 16 O -0.99 -42.57 17.01 -128.00 -2.18 -44.75 16 17 C -0.77 -23.32 6.13 22.19 0.14 -23.18 16 18 C -0.16 -5.10 10.79 22.19 0.24 -4.86 16 19 C -0.03 -0.80 12.09 66.97 0.81 0.01 16 20 O -0.17 -3.79 10.65 -2.53 -0.03 -3.81 16 21 C 0.11 2.48 11.82 66.97 0.79 3.27 16 22 C -0.09 -4.20 9.23 22.15 0.20 -4.00 16 23 C -0.18 -9.39 8.60 22.48 0.19 -9.20 16 24 H 0.29 13.50 8.30 -92.71 -0.77 12.73 16 25 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 26 H 0.12 4.05 8.06 -2.91 -0.02 4.03 16 27 H 0.42 11.03 8.95 -96.75 -0.87 10.16 16 28 H 0.14 5.05 8.06 -2.91 -0.02 5.02 16 29 H 0.25 3.76 8.06 -2.91 -0.02 3.74 16 30 H 0.26 3.48 8.06 -2.91 -0.02 3.46 16 31 H 0.10 4.50 7.96 -2.91 -0.02 4.48 16 32 H 0.10 5.65 6.23 -2.91 -0.02 5.63 16 Total: -1.00 -67.40 302.27 1.04 -66.36 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.30 Total: 31.37 kcal Atomic # 6 Polarization: -72.08 SS G_CDS: 3.58 Total: -68.51 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -0.05 Total: -76.07 kcal Atomic # 8 Polarization: -79.15 SS G_CDS: -4.49 Total: -83.64 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Atomic # 16 Polarization: 92.04 SS G_CDS: -0.33 Total: 91.71 kcal Total: -67.40 1.04 -66.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336472912.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.992 kcal (2) G-P(sol) polarization free energy of solvation -67.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds