Wall clock time and date at job start Tue Mar 31 2020 06:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86805 * 119.99544 * 2 1 4 4 H 1.48491 * 109.47548 * 85.26002 * 3 2 1 5 5 H 1.48502 * 109.46992 * 205.25982 * 3 2 1 6 6 H 1.48504 * 109.46816 * 325.25547 * 3 2 1 7 7 C 1.39924 * 120.00486 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00132 * 197.10718 * 7 2 1 9 9 C 1.41047 * 119.99718 * 17.11280 * 7 2 1 10 10 C 1.40722 * 120.30847 * 25.63352 * 9 7 2 11 11 C 1.36444 * 119.95363 * 180.02562 * 10 9 7 12 12 C 1.38904 * 120.59920 * 0.02562 * 11 10 9 13 13 C 1.38169 * 120.62237 * 359.97438 * 12 11 10 14 14 C 1.38750 * 120.02467 * 359.71859 * 13 12 11 15 15 N 1.38738 * 120.29458 * 180.28131 * 14 13 12 16 16 S 1.65595 * 120.00148 * 35.47166 * 15 14 13 17 17 O 1.42097 * 106.40330 * 174.03697 * 16 15 14 18 18 O 1.42107 * 106.40441 * 306.95843 * 16 15 14 19 19 C 1.76202 * 107.22005 * 60.49802 * 16 15 14 20 20 C 1.34664 * 126.59031 * 269.69122 * 19 16 15 21 21 N 1.34133 * 108.02092 * 179.87068 * 20 19 16 22 22 C 1.30501 * 109.25043 * 0.39702 * 21 20 19 23 23 N 1.35034 * 108.70212 * 359.75578 * 22 21 20 24 24 H 0.97003 * 126.39817 * 179.97438 * 23 22 21 25 25 H 0.96994 * 120.00616 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.02562 * 359.97438 * 10 9 7 27 27 H 1.08003 * 119.70581 * 180.02562 * 11 10 9 28 28 H 1.07998 * 119.69036 * 179.97438 * 12 11 10 29 29 H 1.07999 * 119.98866 * 180.02562 * 13 12 11 30 30 H 0.97003 * 119.99876 * 215.47453 * 15 14 13 31 31 H 1.08004 * 125.99425 * 0.02562 * 20 19 16 32 32 H 1.08004 * 125.64844 * 179.73140 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6179 0.0000 4 1 2.3900 2.1045 1.3952 5 1 3.5868 1.4135 -0.5975 6 1 1.4937 2.6217 -0.7980 7 6 2.0085 -1.2117 0.0005 8 1 3.0527 -1.2322 0.2757 9 6 1.3502 -2.4064 -0.3584 10 6 0.2250 -2.3711 -1.2028 11 6 -0.4066 -3.5311 -1.5449 12 6 0.0501 -4.7525 -1.0665 13 6 1.1525 -4.8154 -0.2360 14 6 1.8183 -3.6523 0.1233 15 7 2.9293 -3.7095 0.9522 16 16 3.9828 -4.9821 0.8383 17 8 5.0693 -4.6822 1.7036 18 8 3.2001 -6.1625 0.9538 19 6 4.6341 -4.9752 -0.7989 20 6 4.1254 -5.6171 -1.8679 21 7 4.9119 -5.3550 -2.9223 22 6 5.8934 -4.5819 -2.5453 23 7 5.7575 -4.3211 -1.2274 24 1 6.3463 -3.7729 -0.6854 25 1 -0.4851 0.8399 0.0004 26 1 -0.1388 -1.4264 -1.5792 27 1 -1.2696 -3.4994 -2.1936 28 1 -0.4613 -5.6617 -1.3464 29 1 1.4991 -5.7707 0.1297 30 1 3.0890 -3.0040 1.5985 31 1 3.2381 -6.2328 -1.8755 32 1 6.6837 -4.2122 -3.1819 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337857653.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:39 Heat of formation + Delta-G solvation = 6.019069 kcal Electronic energy + Delta-G solvation = -21380.596191 eV Core-core repulsion = 18047.936097 eV Total energy + Delta-G solvation = -3332.660094 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.92884 -38.17654 -36.91891 -35.62621 -34.11506 -33.72359 -32.53140 -29.80789 -29.65190 -28.06605 -25.28665 -22.45908 -21.50020 -21.41883 -20.80872 -19.76526 -18.41668 -17.57475 -16.98283 -16.56193 -15.75494 -15.27184 -14.94833 -14.89517 -14.40044 -14.17745 -13.50165 -13.47834 -12.89822 -12.69616 -12.34779 -11.94325 -11.77198 -11.67584 -11.56763 -11.36357 -11.27743 -11.00065 -10.62738 -10.22658 -10.09818 -10.03554 -9.77951 -9.36097 -9.33128 -8.94494 -7.57432 -7.22696 -6.87701 -4.50795 0.63632 1.61067 2.64489 2.85067 2.95949 2.98335 3.01940 3.08261 3.10298 3.48086 3.77722 3.99656 4.47500 4.60930 4.74703 5.22177 5.46897 5.50056 5.83963 6.08746 6.25998 6.41196 6.59049 6.70444 6.87898 7.03031 7.06856 7.23768 7.34863 7.51909 7.81691 7.85938 7.92866 8.00648 8.09163 8.45526 8.66664 8.79191 10.00445 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.015162 B = 0.006806 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.269680 B = 4112.808680 C = 4584.294889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.262 1.262 6 H -0.274 1.274 7 C -0.458 4.458 8 H 0.077 0.923 9 C 0.110 3.890 10 C -0.146 4.146 11 C -0.111 4.111 12 C -0.213 4.213 13 C -0.133 4.133 14 C 0.014 3.986 15 N -1.015 6.015 16 S 2.704 3.296 17 O -0.979 6.979 18 O -0.944 6.944 19 C -0.588 4.588 20 C 0.112 3.888 21 N -0.503 5.503 22 C 0.227 3.773 23 N -0.517 5.517 24 H 0.427 0.573 25 H 0.283 0.717 26 H 0.120 0.880 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.132 0.868 30 H 0.421 0.579 31 H 0.185 0.815 32 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.752 -2.562 -1.824 8.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.142 4.142 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.186 1.186 6 H -0.199 1.199 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.104 3.896 10 C -0.166 4.166 11 C -0.130 4.130 12 C -0.234 4.234 13 C -0.155 4.155 14 C -0.083 4.083 15 N -0.768 5.768 16 S 2.792 3.208 17 O -0.969 6.969 18 O -0.933 6.933 19 C -0.784 4.784 20 C -0.043 4.043 21 N -0.223 5.223 22 C -0.060 4.060 23 N -0.119 5.119 24 H 0.266 0.734 25 H 0.094 0.906 26 H 0.138 0.862 27 H 0.108 0.892 28 H 0.113 0.887 29 H 0.149 0.851 30 H 0.259 0.741 31 H 0.203 0.797 32 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 7.709 -3.460 -2.035 8.691 hybrid contribution 0.810 2.121 0.499 2.325 sum 8.519 -1.338 -1.535 8.759 Atomic orbital electron populations 1.69825 1.07525 1.29513 1.34108 1.25905 0.94753 1.01333 0.92223 0.86326 0.80674 0.80754 0.79196 1.19430 1.18550 1.19894 1.19362 0.97666 0.91082 1.40748 0.90463 1.17479 0.92260 0.90741 0.89103 1.20967 0.98332 0.97200 1.00081 1.20524 0.98980 0.93346 1.00169 1.20261 1.00393 0.96453 1.06261 1.21299 0.96579 0.97045 1.00565 1.17254 0.93338 0.95240 1.02469 1.52229 1.34258 1.43545 1.46728 1.02229 0.72521 0.74075 0.71992 1.93516 1.54432 1.84970 1.63954 1.93546 1.68547 1.46449 1.84773 1.33896 1.02777 1.15430 1.26261 1.22451 0.98386 0.96907 0.86526 1.70385 1.05134 1.16741 1.30025 1.25525 0.99805 0.97543 0.83132 1.42942 1.20541 1.37977 1.10449 0.73376 0.90605 0.86205 0.89169 0.88651 0.85063 0.74139 0.79748 0.76779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.82 10.99 55.55 0.61 -18.21 16 2 C 0.08 1.78 5.14 -17.33 -0.09 1.69 16 3 Si 0.91 17.35 29.59 -169.99 -5.03 12.32 16 4 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 5 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 6 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.46 -10.93 8.41 -37.89 -0.32 -11.25 16 8 H 0.08 1.73 7.33 -52.48 -0.38 1.34 16 9 C 0.11 2.67 5.58 -106.63 -0.59 2.07 16 10 C -0.15 -3.52 8.63 -39.29 -0.34 -3.86 16 11 C -0.11 -2.45 9.96 -39.98 -0.40 -2.85 16 12 C -0.21 -4.53 10.04 -39.36 -0.40 -4.93 16 13 C -0.13 -2.87 9.25 -39.42 -0.36 -3.23 16 14 C 0.01 0.31 6.27 -83.29 -0.52 -0.21 16 15 N -1.01 -19.34 5.35 32.72 0.17 -19.16 16 16 S 2.70 47.16 5.68 -107.50 -0.61 46.55 16 17 O -0.98 -17.76 18.02 -57.17 -1.03 -18.79 16 18 O -0.94 -18.10 14.81 -57.17 -0.85 -18.95 16 19 C -0.59 -9.64 7.10 -16.56 -0.12 -9.76 16 20 C 0.11 1.92 11.64 -17.81 -0.21 1.71 16 21 N -0.50 -8.21 11.25 -14.66 -0.17 -8.37 16 22 C 0.23 2.88 13.04 -90.38 -1.18 1.70 16 23 N -0.52 -6.90 6.15 -13.24 -0.08 -6.98 16 24 H 0.43 4.42 8.96 -40.82 -0.37 4.05 16 25 H 0.28 6.19 8.30 -40.82 -0.34 5.85 16 26 H 0.12 2.99 6.21 -52.48 -0.33 2.66 16 27 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 28 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 29 H 0.13 2.69 5.16 -52.49 -0.27 2.42 16 30 H 0.42 7.52 8.09 -34.47 -0.28 7.24 16 31 H 0.19 2.99 8.06 -52.48 -0.42 2.56 16 32 H 0.22 1.59 8.06 -52.48 -0.42 1.16 16 LS Contribution 294.50 15.07 4.44 4.44 Total: -1.00 -30.61 294.50 -9.52 -40.13 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -2.45 Total: 15.94 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -4.53 Total: -28.91 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.54 Total: -52.72 kcal Atomic # 8 Polarization: -35.86 SS G_CDS: -1.88 Total: -37.74 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Atomic # 16 Polarization: 47.16 SS G_CDS: -0.61 Total: 46.55 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.61 -9.52 -40.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337857653.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.151 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds