Wall clock time and date at job start Tue Mar 31 2020 06:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86805 * 119.99544 * 2 1 4 4 H 1.48491 * 109.47548 * 85.26002 * 3 2 1 5 5 H 1.48502 * 109.46992 * 205.25982 * 3 2 1 6 6 H 1.48504 * 109.46816 * 325.25547 * 3 2 1 7 7 C 1.39924 * 120.00486 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00132 * 197.10718 * 7 2 1 9 9 C 1.41047 * 119.99718 * 17.11280 * 7 2 1 10 10 C 1.40722 * 120.30847 * 25.63352 * 9 7 2 11 11 C 1.36444 * 119.95363 * 180.02562 * 10 9 7 12 12 C 1.38904 * 120.59920 * 0.02562 * 11 10 9 13 13 C 1.38169 * 120.62237 * 359.97438 * 12 11 10 14 14 C 1.38750 * 120.02467 * 359.71859 * 13 12 11 15 15 N 1.38738 * 120.29458 * 180.28131 * 14 13 12 16 16 S 1.65595 * 120.00148 * 35.47166 * 15 14 13 17 17 O 1.42097 * 106.40330 * 174.03697 * 16 15 14 18 18 O 1.42107 * 106.40441 * 306.95843 * 16 15 14 19 19 C 1.76202 * 107.22005 * 60.49802 * 16 15 14 20 20 C 1.34664 * 126.59031 * 269.69122 * 19 16 15 21 21 N 1.34133 * 108.02092 * 179.87068 * 20 19 16 22 22 C 1.30501 * 109.25043 * 0.39702 * 21 20 19 23 23 N 1.35034 * 108.70212 * 359.75578 * 22 21 20 24 24 H 0.97003 * 126.39817 * 179.97438 * 23 22 21 25 25 H 0.96994 * 120.00616 * 359.97438 * 1 2 3 26 26 H 1.08005 * 120.02562 * 359.97438 * 10 9 7 27 27 H 1.08003 * 119.70581 * 180.02562 * 11 10 9 28 28 H 1.07998 * 119.69036 * 179.97438 * 12 11 10 29 29 H 1.07999 * 119.98866 * 180.02562 * 13 12 11 30 30 H 0.97003 * 119.99876 * 215.47453 * 15 14 13 31 31 H 1.08004 * 125.99425 * 0.02562 * 20 19 16 32 32 H 1.08004 * 125.64844 * 179.73140 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6179 0.0000 4 1 2.3900 2.1045 1.3952 5 1 3.5868 1.4135 -0.5975 6 1 1.4937 2.6217 -0.7980 7 6 2.0085 -1.2117 0.0005 8 1 3.0527 -1.2322 0.2757 9 6 1.3502 -2.4064 -0.3584 10 6 0.2250 -2.3711 -1.2028 11 6 -0.4066 -3.5311 -1.5449 12 6 0.0501 -4.7525 -1.0665 13 6 1.1525 -4.8154 -0.2360 14 6 1.8183 -3.6523 0.1233 15 7 2.9293 -3.7095 0.9522 16 16 3.9828 -4.9821 0.8383 17 8 5.0693 -4.6822 1.7036 18 8 3.2001 -6.1625 0.9538 19 6 4.6341 -4.9752 -0.7989 20 6 4.1254 -5.6171 -1.8679 21 7 4.9119 -5.3550 -2.9223 22 6 5.8934 -4.5819 -2.5453 23 7 5.7575 -4.3211 -1.2274 24 1 6.3463 -3.7729 -0.6854 25 1 -0.4851 0.8399 0.0004 26 1 -0.1388 -1.4264 -1.5792 27 1 -1.2696 -3.4994 -2.1936 28 1 -0.4613 -5.6617 -1.3464 29 1 1.4991 -5.7707 0.1297 30 1 3.0890 -3.0040 1.5985 31 1 3.2381 -6.2328 -1.8755 32 1 6.6837 -4.2122 -3.1819 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337857653.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:39 Heat of formation + Delta-G solvation = -14.940223 kcal Electronic energy + Delta-G solvation = -21381.505054 eV Core-core repulsion = 18047.936097 eV Total energy + Delta-G solvation = -3333.568957 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.07737 -39.86320 -38.41572 -37.11477 -35.76046 -35.41254 -33.68758 -31.50689 -30.89818 -29.75586 -27.02866 -23.66750 -23.18518 -22.64691 -22.45295 -21.00132 -19.83996 -19.25177 -18.54466 -18.14391 -17.06733 -16.88893 -16.35702 -16.10646 -16.02051 -15.35639 -15.16760 -14.67028 -14.53567 -14.36255 -13.96414 -13.44043 -13.35717 -13.29204 -12.99546 -12.92235 -12.91029 -12.60509 -12.16983 -11.82810 -11.48678 -11.30298 -11.26185 -11.04454 -11.03178 -10.15932 -9.34241 -8.94003 -8.57677 -6.29183 -0.77897 0.40845 0.97945 1.10129 1.39625 1.49374 1.54232 1.82140 1.94730 2.18605 2.19440 2.60062 2.75428 3.37568 3.64253 3.71226 4.14722 4.33133 4.46574 4.59766 4.66347 4.68633 5.05068 5.16587 5.30305 5.35092 5.37571 5.65667 5.80616 6.10372 6.21456 6.26768 6.29024 6.35612 6.70850 6.72850 6.91149 7.04279 8.32722 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.015162 B = 0.006806 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.269680 B = 4112.808680 C = 4584.294889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.038 3.962 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.258 1.258 6 H -0.271 1.271 7 C -0.485 4.485 8 H 0.084 0.916 9 C 0.081 3.919 10 C -0.171 4.171 11 C -0.117 4.117 12 C -0.214 4.214 13 C -0.143 4.143 14 C 0.020 3.980 15 N -1.021 6.021 16 S 2.733 3.267 17 O -0.983 6.983 18 O -0.962 6.962 19 C -0.605 4.605 20 C 0.100 3.900 21 N -0.537 5.537 22 C 0.249 3.751 23 N -0.513 5.513 24 H 0.441 0.559 25 H 0.288 0.712 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.123 0.877 29 H 0.142 0.858 30 H 0.423 0.577 31 H 0.183 0.817 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.505 -2.453 -2.300 10.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.178 4.178 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.181 1.181 6 H -0.196 1.196 7 C -0.515 4.515 8 H 0.102 0.898 9 C 0.075 3.925 10 C -0.192 4.192 11 C -0.136 4.136 12 C -0.233 4.233 13 C -0.164 4.164 14 C -0.077 4.077 15 N -0.772 5.772 16 S 2.823 3.177 17 O -0.973 6.973 18 O -0.952 6.952 19 C -0.803 4.803 20 C -0.056 4.056 21 N -0.257 5.257 22 C -0.038 4.038 23 N -0.116 5.116 24 H 0.283 0.717 25 H 0.098 0.902 26 H 0.122 0.878 27 H 0.129 0.871 28 H 0.141 0.859 29 H 0.159 0.841 30 H 0.262 0.738 31 H 0.200 0.800 32 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 9.443 -3.336 -2.472 10.315 hybrid contribution 0.350 1.946 0.603 2.067 sum 9.793 -1.390 -1.869 10.066 Atomic orbital electron populations 1.69887 1.08890 1.30530 1.35199 1.26680 0.95389 1.04275 0.91472 0.85310 0.79320 0.76605 0.79250 1.18901 1.18144 1.19615 1.19600 0.98124 0.91732 1.42002 0.89826 1.17781 0.92902 0.91871 0.89898 1.20978 0.99520 0.97334 1.01333 1.20764 0.99459 0.93067 1.00338 1.20613 1.00129 0.97180 1.05422 1.21524 0.96784 0.97299 1.00839 1.17305 0.93922 0.94778 1.01742 1.52265 1.34497 1.43725 1.46740 1.00959 0.71895 0.72909 0.71965 1.93513 1.54240 1.84973 1.64537 1.93511 1.69210 1.47038 1.85407 1.33414 1.04505 1.17181 1.25250 1.22597 0.98753 0.97098 0.87125 1.70392 1.06456 1.18586 1.30227 1.26574 0.99282 0.94917 0.82979 1.42993 1.19824 1.37739 1.11031 0.71671 0.90157 0.87831 0.87145 0.85940 0.84077 0.73836 0.79972 0.71530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.19 10.99 21.83 0.24 -39.95 16 2 C 0.04 1.75 5.14 85.24 0.44 2.19 16 3 Si 0.97 35.43 29.59 68.60 2.03 37.46 16 4 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 5 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 6 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 7 C -0.48 -23.40 8.41 23.37 0.20 -23.20 16 8 H 0.08 3.76 7.33 -2.91 -0.02 3.73 16 9 C 0.08 4.00 5.58 -21.17 -0.12 3.88 16 10 C -0.17 -8.48 8.63 22.46 0.19 -8.29 16 11 C -0.12 -5.17 9.96 22.01 0.22 -4.95 16 12 C -0.21 -8.89 10.04 22.41 0.22 -8.66 16 13 C -0.14 -6.09 9.25 22.38 0.21 -5.89 16 14 C 0.02 0.87 6.27 38.99 0.24 1.11 16 15 N -1.02 -38.58 5.35 -50.39 -0.27 -38.85 16 16 S 2.73 92.76 5.68 -56.49 -0.32 92.44 16 17 O -0.98 -34.23 18.02 -128.00 -2.31 -36.54 16 18 O -0.96 -36.18 14.81 -128.00 -1.90 -38.08 16 19 C -0.60 -18.97 7.10 83.09 0.59 -18.38 16 20 C 0.10 3.31 11.64 83.52 0.97 4.28 16 21 N -0.54 -16.43 11.25 -200.31 -2.25 -18.69 16 22 C 0.25 5.49 13.04 180.26 2.35 7.85 16 23 N -0.51 -12.34 6.15 -195.81 -1.20 -13.55 16 24 H 0.44 7.86 8.96 -92.71 -0.83 7.03 16 25 H 0.29 12.85 8.30 -92.71 -0.77 12.08 16 26 H 0.10 5.37 6.21 -2.91 -0.02 5.35 16 27 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 28 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 29 H 0.14 5.69 5.16 -2.91 -0.02 5.67 16 30 H 0.42 15.13 8.09 -96.75 -0.78 14.34 16 31 H 0.18 5.86 8.06 -2.91 -0.02 5.84 16 32 H 0.27 2.57 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -65.69 294.50 -0.87 -66.56 By element: Atomic # 1 Polarization: 39.65 SS G_CDS: -0.41 Total: 39.24 kcal Atomic # 6 Polarization: -55.57 SS G_CDS: 5.52 Total: -50.05 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -3.49 Total: -111.03 kcal Atomic # 8 Polarization: -70.42 SS G_CDS: -4.20 Total: -74.62 kcal Atomic # 14 Polarization: 35.43 SS G_CDS: 2.03 Total: 37.46 kcal Atomic # 16 Polarization: 92.76 SS G_CDS: -0.32 Total: 92.44 kcal Total: -65.69 -0.87 -66.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337857653.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.616 kcal (2) G-P(sol) polarization free energy of solvation -65.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds