Wall clock time and date at job start Tue Mar 31 2020 06:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46991 * 121.92572 * 3 2 1 5 5 C 1.33329 * 120.00462 * 271.14369 * 4 3 2 6 6 H 1.07995 * 120.00308 * 190.45588 * 5 4 3 7 7 C 1.46791 * 119.99859 * 10.44986 * 5 4 3 8 8 N 1.29322 * 119.99637 * 11.54759 * 7 5 4 9 9 Si 1.86795 * 119.99892 * 191.55101 * 7 5 4 10 10 H 1.48493 * 109.47410 * 59.99937 * 9 7 5 11 11 H 1.48509 * 109.46651 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46998 * 299.99365 * 9 7 5 13 13 C 1.34780 * 119.99989 * 91.13583 * 4 3 2 14 14 O 1.21471 * 120.00049 * 5.13406 * 13 4 3 15 15 C 1.47699 * 119.99980 * 185.12609 * 13 4 3 16 16 C 1.39655 * 120.14509 * 311.32672 * 15 13 4 17 17 C 1.38137 * 119.82213 * 179.97438 * 16 15 13 18 18 F 1.35100 * 119.95312 * 179.97438 * 17 16 15 19 19 C 1.38623 * 120.09795 * 359.97111 * 17 16 15 20 20 C 1.38316 * 120.28565 * 0.04966 * 19 17 16 21 21 N 1.48015 * 119.90788 * 179.97438 * 20 19 17 22 22 O 1.31707 * 119.99553 * 179.97438 * 21 20 19 23 23 O 1.31693 * 120.00238 * 359.97438 * 21 20 19 24 24 C 1.37963 * 120.17969 * 359.95715 * 20 19 17 25 25 H 1.08996 * 109.46932 * 1.92783 * 3 2 1 26 26 H 1.08993 * 109.46867 * 241.92717 * 3 2 1 27 27 H 0.97000 * 119.99691 * 180.02562 * 8 7 5 28 28 H 1.07998 * 120.09086 * 359.70138 * 16 15 13 29 29 H 1.08002 * 119.85395 * 180.02562 * 19 17 16 30 30 H 1.07999 * 120.04778 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.7313 -1.1722 5 6 3.2968 0.0881 -2.3227 6 1 3.8119 0.5807 -3.1341 7 6 2.8178 -1.2898 -2.4866 8 7 2.0135 -1.8028 -1.6134 9 14 3.3700 -2.3020 -3.9561 10 1 4.8488 -2.4361 -3.9373 11 1 2.7493 -3.6496 -3.8903 12 1 2.9502 -1.6250 -5.2094 13 6 3.3418 2.0538 -1.0878 14 8 3.2487 2.6218 -0.0181 15 6 3.7246 2.8123 -2.2959 16 6 4.7319 2.3322 -3.1357 17 6 5.0842 3.0468 -4.2641 18 9 6.0587 2.5851 -5.0780 19 6 4.4394 4.2370 -4.5627 20 6 3.4414 4.7167 -3.7337 21 7 2.7588 5.9888 -4.0602 22 8 1.8080 6.4469 -3.2724 23 8 3.1021 6.6626 -5.1384 24 6 3.0804 4.0125 -2.6036 25 1 2.9718 -1.0262 -0.0346 26 1 2.9711 0.4844 0.9067 27 1 1.6973 -2.7134 -1.7215 28 1 5.2371 1.4070 -2.9011 29 1 4.7177 4.7924 -5.4462 30 1 2.3006 4.3888 -1.9581 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344252305.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:49 Heat of formation + Delta-G solvation = 30.789897 kcal Electronic energy + Delta-G solvation = -22672.825462 eV Core-core repulsion = 18775.026336 eV Total energy + Delta-G solvation = -3897.799127 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.064 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -49.11891 -40.38461 -39.13536 -37.70485 -35.92529 -34.79152 -34.37769 -32.62571 -31.97173 -30.94564 -28.08294 -26.72494 -25.32964 -23.46487 -22.47317 -20.27763 -19.22796 -18.28825 -17.98642 -16.94355 -16.79774 -16.48964 -16.13447 -16.09550 -15.71880 -15.57766 -14.98220 -14.77281 -13.98796 -13.53918 -13.38637 -13.00862 -12.52645 -12.40288 -12.36204 -12.05174 -11.84502 -11.59226 -11.53147 -11.29558 -11.13279 -10.88039 -10.82105 -10.63587 -10.62699 -9.81139 -9.46499 -9.16018 -8.99869 -8.84925 -7.16379 -4.33579 -0.68683 0.67434 1.04775 1.09633 2.66394 2.83389 2.86363 2.93627 3.22597 3.56022 3.67504 3.87510 3.95363 4.17896 4.34684 4.52439 4.60500 4.75896 4.88494 5.07297 5.22434 5.52345 5.64593 5.71834 5.79970 6.06549 6.16373 6.37478 6.41552 6.62235 6.80013 6.83797 7.66833 8.24303 8.62826 8.80536 9.27453 9.79741 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.006072 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.261880 B = 4610.377239 C = 5753.259565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C 0.254 3.746 3 C 0.219 3.781 4 N -0.388 5.388 5 C -0.389 4.389 6 H 0.123 0.877 7 C 0.054 3.946 8 N -0.820 5.820 9 Si 0.933 3.067 10 H -0.260 1.260 11 H -0.276 1.276 12 H -0.265 1.265 13 C 0.457 3.543 14 O -0.592 6.592 15 C -0.041 4.041 16 C -0.075 4.075 17 C 0.102 3.898 18 F -0.123 7.123 19 C -0.102 4.102 20 C 0.015 3.985 21 N -0.013 5.013 22 O -0.165 6.165 23 O -0.176 6.176 24 C -0.024 4.024 25 H 0.141 0.859 26 H 0.098 0.902 27 H 0.292 0.708 28 H 0.174 0.826 29 H 0.163 0.837 30 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.907 0.914 -4.022 8.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.064 4.064 3 C 0.094 3.906 4 N -0.100 5.100 5 C -0.516 4.516 6 H 0.140 0.860 7 C -0.163 4.163 8 N -0.451 5.451 9 Si 0.756 3.244 10 H -0.185 1.185 11 H -0.201 1.201 12 H -0.189 1.189 13 C 0.248 3.752 14 O -0.480 6.480 15 C -0.046 4.046 16 C -0.096 4.096 17 C 0.081 3.919 18 F -0.102 7.102 19 C -0.123 4.123 20 C -0.072 4.072 21 N 0.466 4.534 22 O -0.360 6.360 23 O -0.369 6.369 24 C -0.044 4.044 25 H 0.159 0.841 26 H 0.116 0.884 27 H 0.105 0.895 28 H 0.191 0.809 29 H 0.180 0.820 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.375 0.340 -3.307 7.190 hybrid contribution 0.418 -0.375 -1.266 1.385 sum 6.793 -0.035 -4.573 8.189 Atomic orbital electron populations 1.80915 1.13564 1.11261 1.09823 1.29090 0.95158 0.90660 0.91520 1.18981 0.81697 1.00756 0.89200 1.42631 1.51769 1.05372 1.10265 1.21131 1.40471 0.96062 0.93976 0.85992 1.26973 0.93354 0.97457 0.98479 1.68858 1.24311 1.17040 1.34935 0.85860 0.79925 0.78440 0.80130 1.18487 1.20065 1.18933 1.17372 0.88429 0.81739 0.87661 1.90694 1.60857 1.68412 1.28003 1.19705 0.94965 0.93426 0.96502 1.22073 0.95686 1.00227 0.91586 1.17056 0.90120 0.93430 0.91254 1.91568 1.59347 1.88077 1.71196 1.20811 0.94781 0.95892 1.00847 1.19690 1.00515 0.86619 1.00331 1.50356 0.99957 1.02242 1.00823 1.96301 1.20951 1.73112 1.45596 1.96249 1.69747 1.58372 1.12539 1.21119 0.98044 0.92173 0.93111 0.84144 0.88397 0.89499 0.80900 0.81985 0.81971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.18 18.54 42.15 0.78 -10.40 16 2 C 0.25 5.52 13.61 -20.76 -0.28 5.24 16 3 C 0.22 4.21 5.23 -6.83 -0.04 4.17 16 4 N -0.39 -7.78 2.49 -117.51 -0.29 -8.08 16 5 C -0.39 -7.66 8.94 -13.45 -0.12 -7.78 16 6 H 0.12 2.20 4.05 -52.49 -0.21 1.99 16 7 C 0.05 1.05 5.36 -15.15 -0.08 0.97 16 8 N -0.82 -16.87 8.60 56.00 0.48 -16.39 16 9 Si 0.93 15.55 29.66 -169.99 -5.04 10.51 16 10 H -0.26 -4.18 7.11 56.52 0.40 -3.78 16 11 H -0.28 -4.68 7.11 56.52 0.40 -4.28 16 12 H -0.26 -4.57 7.11 56.52 0.40 -4.16 16 13 C 0.46 9.21 7.19 -12.39 -0.09 9.12 16 14 O -0.59 -13.37 16.55 5.39 0.09 -13.28 16 15 C -0.04 -0.71 5.22 -104.98 -0.55 -1.25 16 16 C -0.08 -1.10 7.48 -39.09 -0.29 -1.39 16 17 C 0.10 1.35 7.29 -39.48 -0.29 1.06 16 18 F -0.12 -1.57 17.26 2.25 0.04 -1.53 16 19 C -0.10 -1.37 9.55 -39.41 -0.38 -1.75 16 20 C 0.01 0.23 6.88 -80.02 -0.55 -0.32 16 21 N -0.01 -0.23 4.98 33.93 0.17 -0.06 16 22 O -0.16 -2.98 19.14 -31.57 -0.60 -3.58 16 23 O -0.18 -2.96 19.14 -31.56 -0.60 -3.56 16 24 C -0.02 -0.40 9.25 -39.16 -0.36 -0.76 16 25 H 0.14 2.58 6.03 -51.93 -0.31 2.27 16 26 H 0.10 1.72 7.32 -51.93 -0.38 1.34 16 27 H 0.29 5.74 8.26 -40.82 -0.34 5.40 16 28 H 0.17 2.35 6.60 -52.49 -0.35 2.00 16 29 H 0.16 1.86 7.56 -52.49 -0.40 1.46 16 30 H 0.16 2.76 7.57 -52.49 -0.40 2.37 16 LS Contribution 291.10 15.07 4.39 4.39 Total: -1.00 -25.27 291.10 -4.80 -30.07 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -1.18 Total: 4.59 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -3.03 Total: 7.31 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 1.14 Total: -34.92 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -1.12 Total: -20.42 kcal Atomic # 9 Polarization: -1.57 SS G_CDS: 0.04 Total: -1.53 kcal Atomic # 14 Polarization: 15.55 SS G_CDS: -5.04 Total: 10.51 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -25.27 -4.80 -30.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344252305.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.863 kcal (2) G-P(sol) polarization free energy of solvation -25.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds