Wall clock time and date at job start Tue Mar 31 2020 06:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46991 * 121.92572 * 3 2 1 5 5 C 1.33329 * 120.00462 * 271.14369 * 4 3 2 6 6 H 1.07995 * 120.00308 * 190.45588 * 5 4 3 7 7 C 1.46791 * 119.99859 * 10.44986 * 5 4 3 8 8 N 1.29322 * 119.99637 * 11.54759 * 7 5 4 9 9 Si 1.86795 * 119.99892 * 191.55101 * 7 5 4 10 10 H 1.48493 * 109.47410 * 59.99937 * 9 7 5 11 11 H 1.48509 * 109.46651 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46998 * 299.99365 * 9 7 5 13 13 C 1.34780 * 119.99989 * 91.13583 * 4 3 2 14 14 O 1.21471 * 120.00049 * 5.13406 * 13 4 3 15 15 C 1.47699 * 119.99980 * 185.12609 * 13 4 3 16 16 C 1.39655 * 120.14509 * 311.32672 * 15 13 4 17 17 C 1.38137 * 119.82213 * 179.97438 * 16 15 13 18 18 F 1.35100 * 119.95312 * 179.97438 * 17 16 15 19 19 C 1.38623 * 120.09795 * 359.97111 * 17 16 15 20 20 C 1.38316 * 120.28565 * 0.04966 * 19 17 16 21 21 N 1.48015 * 119.90788 * 179.97438 * 20 19 17 22 22 O 1.31707 * 119.99553 * 179.97438 * 21 20 19 23 23 O 1.31693 * 120.00238 * 359.97438 * 21 20 19 24 24 C 1.37963 * 120.17969 * 359.95715 * 20 19 17 25 25 H 1.08996 * 109.46932 * 1.92783 * 3 2 1 26 26 H 1.08993 * 109.46867 * 241.92717 * 3 2 1 27 27 H 0.97000 * 119.99691 * 180.02562 * 8 7 5 28 28 H 1.07998 * 120.09086 * 359.70138 * 16 15 13 29 29 H 1.08002 * 119.85395 * 180.02562 * 19 17 16 30 30 H 1.07999 * 120.04778 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0960 0.7313 -1.1722 5 6 3.2968 0.0881 -2.3227 6 1 3.8119 0.5807 -3.1341 7 6 2.8178 -1.2898 -2.4866 8 7 2.0135 -1.8028 -1.6134 9 14 3.3700 -2.3020 -3.9561 10 1 4.8488 -2.4361 -3.9373 11 1 2.7493 -3.6496 -3.8903 12 1 2.9502 -1.6250 -5.2094 13 6 3.3418 2.0538 -1.0878 14 8 3.2487 2.6218 -0.0181 15 6 3.7246 2.8123 -2.2959 16 6 4.7319 2.3322 -3.1357 17 6 5.0842 3.0468 -4.2641 18 9 6.0587 2.5851 -5.0780 19 6 4.4394 4.2370 -4.5627 20 6 3.4414 4.7167 -3.7337 21 7 2.7588 5.9888 -4.0602 22 8 1.8080 6.4469 -3.2724 23 8 3.1021 6.6626 -5.1384 24 6 3.0804 4.0125 -2.6036 25 1 2.9718 -1.0262 -0.0346 26 1 2.9711 0.4844 0.9067 27 1 1.6973 -2.7134 -1.7215 28 1 5.2371 1.4070 -2.9011 29 1 4.7177 4.7924 -5.4462 30 1 2.3006 4.3888 -1.9581 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344252305.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:49 Heat of formation + Delta-G solvation = 18.573549 kcal Electronic energy + Delta-G solvation = -22673.355203 eV Core-core repulsion = 18775.026336 eV Total energy + Delta-G solvation = -3898.328867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 293.064 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.18933 -41.75101 -40.56425 -39.05567 -37.56704 -36.48447 -35.72328 -34.11729 -33.30894 -32.19180 -29.60736 -28.03379 -26.81919 -24.81438 -23.71225 -21.70589 -20.66407 -19.64188 -19.39224 -18.33124 -18.24505 -17.73324 -17.38210 -17.30854 -17.07250 -16.73747 -16.50119 -16.17155 -15.47370 -15.01230 -14.71281 -14.52159 -13.89406 -13.83520 -13.65502 -13.49372 -13.32048 -13.20368 -12.97224 -12.66149 -12.48949 -12.31590 -12.18636 -12.12506 -12.00590 -11.32980 -10.88018 -10.53057 -10.38355 -10.29670 -8.63354 -5.89256 -2.00068 -0.55852 -0.20674 -0.19560 1.28647 1.49656 1.57813 1.62500 1.72061 2.13070 2.21926 2.26380 2.65388 2.73101 2.87486 3.27742 3.36828 3.49855 3.59564 3.60832 3.85173 4.23051 4.32927 4.50391 4.51156 4.66641 4.80158 4.88482 5.14076 5.20696 5.33919 5.44684 6.16733 6.73856 6.90660 7.27682 7.74670 8.33236 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.014578 B = 0.006072 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.261880 B = 4610.377239 C = 5753.259565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.265 3.735 3 C 0.219 3.781 4 N -0.393 5.393 5 C -0.410 4.410 6 H 0.138 0.862 7 C 0.024 3.976 8 N -0.848 5.848 9 Si 0.988 3.012 10 H -0.245 1.245 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.450 3.550 14 O -0.625 6.625 15 C -0.057 4.057 16 C -0.058 4.058 17 C 0.116 3.884 18 F -0.111 7.111 19 C -0.074 4.074 20 C 0.010 3.990 21 N -0.012 5.012 22 O -0.217 6.217 23 O -0.143 6.143 24 C -0.031 4.031 25 H 0.150 0.850 26 H 0.111 0.889 27 H 0.291 0.709 28 H 0.187 0.813 29 H 0.193 0.807 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.099 0.876 -6.369 11.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.195 5.195 2 C -0.052 4.052 3 C 0.094 3.906 4 N -0.105 5.105 5 C -0.537 4.537 6 H 0.155 0.845 7 C -0.189 4.189 8 N -0.480 5.480 9 Si 0.810 3.190 10 H -0.169 1.169 11 H -0.209 1.209 12 H -0.195 1.195 13 C 0.242 3.758 14 O -0.515 6.515 15 C -0.061 4.061 16 C -0.078 4.078 17 C 0.096 3.904 18 F -0.089 7.089 19 C -0.094 4.094 20 C -0.076 4.076 21 N 0.466 4.534 22 O -0.399 6.399 23 O -0.348 6.348 24 C -0.052 4.052 25 H 0.168 0.832 26 H 0.129 0.871 27 H 0.104 0.896 28 H 0.204 0.796 29 H 0.210 0.790 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.507 0.306 -5.561 10.168 hybrid contribution -0.119 -0.263 -0.685 0.743 sum 8.388 0.043 -6.246 10.458 Atomic orbital electron populations 1.80899 1.14736 1.12665 1.11164 1.29632 0.95716 0.89468 0.90363 1.19153 0.80146 1.01491 0.89852 1.42730 1.51612 1.05558 1.10629 1.21476 1.41276 0.96542 0.94363 0.84534 1.27661 0.93045 0.98005 1.00229 1.68917 1.25432 1.17226 1.36409 0.85029 0.80218 0.76573 0.77146 1.16867 1.20908 1.19535 1.17779 0.88057 0.81788 0.88189 1.90657 1.62095 1.69113 1.29622 1.19429 0.96639 0.93718 0.96358 1.22171 0.94321 1.00241 0.91023 1.16822 0.89961 0.92959 0.90671 1.91617 1.58746 1.87877 1.70672 1.21117 0.92468 0.95331 1.00482 1.19685 1.01212 0.86173 1.00537 1.50496 0.99832 1.02500 1.00588 1.96331 1.22776 1.74199 1.46587 1.96218 1.68543 1.58075 1.11918 1.20974 0.98094 0.92399 0.93685 0.83248 0.87092 0.89615 0.79569 0.79032 0.83498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.70 18.54 20.01 0.37 -24.33 16 2 C 0.27 11.76 13.61 89.44 1.22 12.97 16 3 C 0.22 8.46 5.23 84.58 0.44 8.90 16 4 N -0.39 -15.68 2.49 -644.00 -1.60 -17.29 16 5 C -0.41 -15.64 8.94 86.70 0.78 -14.86 16 6 H 0.14 4.61 4.05 -2.91 -0.01 4.60 16 7 C 0.02 0.90 5.36 87.30 0.47 1.37 16 8 N -0.85 -34.73 8.60 23.26 0.20 -34.53 16 9 Si 0.99 30.39 29.66 68.60 2.03 32.42 16 10 H -0.25 -6.89 7.11 99.48 0.71 -6.19 16 11 H -0.28 -9.02 7.11 99.48 0.71 -8.31 16 12 H -0.27 -8.51 7.11 99.48 0.71 -7.81 16 13 C 0.45 18.14 7.19 86.74 0.62 18.76 16 14 O -0.62 -28.73 16.55 -3.62 -0.06 -28.79 16 15 C -0.06 -1.90 5.22 -20.09 -0.10 -2.00 16 16 C -0.06 -1.52 7.48 22.59 0.17 -1.35 16 17 C 0.12 2.59 7.29 22.34 0.16 2.76 16 18 F -0.11 -2.26 17.26 44.97 0.78 -1.48 16 19 C -0.07 -1.66 9.55 22.38 0.21 -1.44 16 20 C 0.01 0.30 6.88 36.33 0.25 0.55 16 21 N -0.01 -0.39 4.98 -46.57 -0.23 -0.63 16 22 O -0.22 -7.96 19.14 3.50 0.07 -7.89 16 23 O -0.14 -4.36 19.14 3.53 0.07 -4.29 16 24 C -0.03 -1.00 9.25 22.55 0.21 -0.80 16 25 H 0.15 5.50 6.03 -2.39 -0.01 5.49 16 26 H 0.11 3.94 7.32 -2.39 -0.02 3.92 16 27 H 0.29 11.46 8.26 -92.71 -0.77 10.69 16 28 H 0.19 4.44 6.60 -2.91 -0.02 4.42 16 29 H 0.19 3.28 7.56 -2.91 -0.02 3.26 16 30 H 0.15 5.22 7.57 -2.91 -0.02 5.20 16 Total: -1.00 -53.94 291.10 7.29 -46.64 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 1.25 Total: 15.29 kcal Atomic # 6 Polarization: 20.44 SS G_CDS: 4.43 Total: 24.87 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -1.27 Total: -76.77 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: 0.07 Total: -40.97 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.78 Total: -1.48 kcal Atomic # 14 Polarization: 30.39 SS G_CDS: 2.03 Total: 32.42 kcal Total: -53.94 7.29 -46.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344252305.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.218 kcal (2) G-P(sol) polarization free energy of solvation -53.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds