Wall clock time and date at job start Tue Mar 31 2020 06:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48493 * 109.47037 * 239.99493 * 3 2 1 5 5 H 1.48501 * 109.46667 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47133 * 119.99441 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21643 * 120.00232 * 359.72100 * 12 11 10 14 14 C 1.47008 * 119.99595 * 179.72423 * 12 11 10 15 15 C 1.33694 * 124.65706 * 179.72051 * 14 12 11 16 16 C 1.40423 * 115.56775 * 179.78983 * 15 14 12 17 17 C 1.41592 * 128.82065 * 180.21753 * 16 15 14 18 18 C 1.36092 * 120.47147 * 180.25423 * 17 16 15 19 19 F 1.35107 * 119.67390 * 180.02562 * 18 17 16 20 20 C 1.39153 * 120.64897 * 0.02562 * 18 17 16 21 21 C 1.37384 * 120.15631 * 0.02833 * 20 18 17 22 22 C 1.39883 * 120.22147 * 359.96265 * 21 20 18 23 23 S 1.75475 * 124.66110 * 0.02562 * 14 12 11 24 24 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 26 26 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 27 27 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 28 28 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 29 29 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 30 30 H 1.07998 * 122.21744 * 359.97438 * 15 14 12 31 31 H 1.07994 * 119.76350 * 0.28517 * 17 16 15 32 32 H 1.07999 * 119.92027 * 180.02562 * 20 18 17 33 33 H 1.08006 * 119.88435 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.4034 -6.0979 0.0059 14 6 1.4520 -7.3710 0.0110 15 6 2.0243 -8.5793 0.0113 16 6 1.1389 -9.6692 0.0217 17 6 1.4355 -11.0537 0.0288 18 6 0.4331 -11.9742 0.0335 19 9 0.7345 -13.2912 0.0408 20 6 -0.8991 -11.5723 0.0307 21 6 -1.2167 -10.2357 0.0226 22 6 -0.2036 -9.2713 0.0180 23 16 -0.2969 -7.5137 0.0103 24 1 -0.4850 0.8400 -0.0004 25 1 0.6249 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8904 27 1 2.8722 -3.6042 0.8906 28 1 2.8722 -3.6042 -0.8894 29 1 0.5430 -4.9308 0.0000 30 1 3.0965 -8.7086 0.0071 31 1 2.4645 -11.3815 0.0312 32 1 -1.6852 -12.3129 0.0348 33 1 -2.2522 -9.9287 0.0201 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344600485.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:45 Heat of formation + Delta-G solvation = -48.424457 kcal Electronic energy + Delta-G solvation = -19159.030781 eV Core-core repulsion = 15804.089877 eV Total energy + Delta-G solvation = -3354.940904 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.063 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.25655 -40.10410 -39.21184 -35.48724 -34.88426 -32.93502 -31.31184 -30.39048 -29.20553 -25.62211 -24.21426 -23.58203 -21.79986 -20.92563 -20.12626 -18.69334 -17.37841 -17.20122 -16.61192 -16.16854 -15.98728 -15.36187 -15.18619 -15.04547 -14.54338 -14.35726 -14.00017 -13.88601 -13.45158 -13.31281 -13.09409 -12.57950 -12.32120 -11.62420 -11.31855 -11.29084 -11.11102 -11.05103 -10.70042 -10.40851 -10.09808 -10.08562 -9.62234 -9.32724 -8.94206 -8.64537 -8.42852 -8.08814 -6.12882 -4.16302 -0.05614 0.64931 1.08494 1.55510 1.63452 3.03137 3.29156 3.30363 3.32292 3.33390 3.38991 3.83944 4.16964 4.37877 4.40583 4.62786 4.78292 4.90538 5.19997 5.24173 5.27522 5.42601 5.54672 5.67260 5.78129 5.93282 6.23131 6.24616 6.34634 6.61233 6.70543 7.43995 7.54400 7.75852 7.84556 8.19916 8.36570 8.89034 9.48767 10.98660 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.046641 B = 0.002654 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.190931 B =10548.954066 C =11128.666628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.711 5.711 12 C 0.575 3.425 13 O -0.531 6.531 14 C -0.201 4.201 15 C -0.057 4.057 16 C -0.054 4.054 17 C -0.109 4.109 18 C 0.099 3.901 19 F -0.138 7.138 20 C -0.131 4.131 21 C -0.052 4.052 22 C -0.150 4.150 23 S 0.148 5.852 24 H 0.263 0.737 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.396 0.604 30 H 0.159 0.841 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.098 -23.284 0.046 23.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.361 5.361 12 C 0.359 3.641 13 O -0.410 6.410 14 C -0.320 4.320 15 C -0.090 4.090 16 C -0.063 4.063 17 C -0.130 4.130 18 C 0.077 3.923 19 F -0.117 7.117 20 C -0.154 4.154 21 C -0.074 4.074 22 C -0.267 4.267 23 S 0.416 5.584 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.230 0.770 30 H 0.176 0.824 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.525 -21.976 0.038 22.437 hybrid contribution 1.074 -0.320 0.009 1.121 sum -3.450 -22.296 0.047 22.561 Atomic orbital electron populations 1.69940 1.06101 1.27082 1.50096 1.24995 0.94904 0.99437 0.94888 0.86555 0.79512 0.82566 0.78808 1.20081 1.21216 1.20076 1.20983 0.93226 0.90264 1.51745 0.92209 1.19341 0.94181 0.91011 0.98013 1.21859 0.96161 0.80780 1.01288 1.46278 1.10397 1.06494 1.72886 1.17088 0.86944 0.82346 0.77718 1.90810 1.12614 1.86968 1.50612 1.24033 0.97500 0.98300 1.12188 1.20173 1.01734 0.89144 0.97899 1.17910 0.91563 0.93377 1.03415 1.20706 0.99913 0.90607 1.01753 1.17014 0.93509 0.77839 1.03926 1.91528 1.94016 1.32075 1.94058 1.21077 0.95074 0.96555 1.02659 1.20353 0.98355 0.90539 0.98162 1.23089 0.96922 0.98387 1.08274 1.84352 1.01377 0.97201 1.75469 0.92715 0.95811 0.95808 0.92007 0.92003 0.76957 0.82391 0.83931 0.83767 0.84118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.62 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.52 5.61 -4.04 -0.02 2.50 16 11 N -0.71 -12.56 5.55 -61.51 -0.34 -12.90 16 12 C 0.58 9.96 7.79 -12.71 -0.10 9.87 16 13 O -0.53 -10.81 16.72 5.24 0.09 -10.72 16 14 C -0.20 -2.78 6.32 -37.62 -0.24 -3.02 16 15 C -0.06 -0.71 9.79 -40.35 -0.40 -1.10 16 16 C -0.05 -0.58 5.87 -107.13 -0.63 -1.21 16 17 C -0.11 -1.01 9.99 -39.07 -0.39 -1.40 16 18 C 0.10 0.88 7.22 -40.01 -0.29 0.59 16 19 F -0.14 -1.29 17.25 2.25 0.04 -1.25 16 20 C -0.13 -0.98 10.01 -39.55 -0.40 -1.38 16 21 C -0.05 -0.41 10.07 -39.28 -0.40 -0.81 16 22 C -0.15 -1.55 6.50 -38.30 -0.25 -1.80 16 23 S 0.15 1.66 22.26 -107.50 -2.39 -0.73 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 28 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.40 6.23 7.52 -40.82 -0.31 5.93 16 30 H 0.16 1.83 7.96 -52.49 -0.42 1.41 16 31 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 32 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 33 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 LS Contribution 313.01 15.07 4.72 4.72 Total: -1.00 -30.85 313.01 -9.06 -39.91 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -3.23 Total: 0.60 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -3.66 Total: -10.67 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.39 Total: -37.97 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.39 Total: -0.73 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.85 -9.06 -39.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344600485.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.517 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds