Wall clock time and date at job start Tue Mar 31 2020 06:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99835 * 2 1 4 4 H 1.48493 * 109.47037 * 239.99493 * 3 2 1 5 5 H 1.48501 * 109.46667 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47133 * 119.99441 * 3 2 1 7 7 C 1.37876 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00510 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 N 1.46499 * 109.47198 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99665 * 180.27868 * 11 10 9 13 13 O 1.21643 * 120.00232 * 359.72100 * 12 11 10 14 14 C 1.47008 * 119.99595 * 179.72423 * 12 11 10 15 15 C 1.33694 * 124.65706 * 179.72051 * 14 12 11 16 16 C 1.40423 * 115.56775 * 179.78983 * 15 14 12 17 17 C 1.41592 * 128.82065 * 180.21753 * 16 15 14 18 18 C 1.36092 * 120.47147 * 180.25423 * 17 16 15 19 19 F 1.35107 * 119.67390 * 180.02562 * 18 17 16 20 20 C 1.39153 * 120.64897 * 0.02562 * 18 17 16 21 21 C 1.37384 * 120.15631 * 0.02833 * 20 18 17 22 22 C 1.39883 * 120.22147 * 359.96265 * 21 20 18 23 23 S 1.75475 * 124.66110 * 0.02562 * 14 12 11 24 24 H 0.96999 * 120.00239 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47322 * 60.00361 * 9 7 2 26 26 H 1.09006 * 109.46960 * 299.99918 * 9 7 2 27 27 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 28 28 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 29 29 H 0.97001 * 119.99790 * 359.97438 * 11 10 9 30 30 H 1.07998 * 122.21744 * 359.97438 * 15 14 12 31 31 H 1.07994 * 119.76350 * 0.28517 * 17 16 15 32 32 H 1.07999 * 119.92027 * 180.02562 * 20 18 17 33 33 H 1.08006 * 119.88435 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 -0.0001 12 6 2.1870 -6.0979 0.0055 13 8 3.4034 -6.0979 0.0059 14 6 1.4520 -7.3710 0.0110 15 6 2.0243 -8.5793 0.0113 16 6 1.1389 -9.6692 0.0217 17 6 1.4355 -11.0537 0.0288 18 6 0.4331 -11.9742 0.0335 19 9 0.7345 -13.2912 0.0408 20 6 -0.8991 -11.5723 0.0307 21 6 -1.2167 -10.2357 0.0226 22 6 -0.2036 -9.2713 0.0180 23 16 -0.2969 -7.5137 0.0103 24 1 -0.4850 0.8400 -0.0004 25 1 0.6249 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8904 27 1 2.8722 -3.6042 0.8906 28 1 2.8722 -3.6042 -0.8894 29 1 0.5430 -4.9308 0.0000 30 1 3.0965 -8.7086 0.0071 31 1 2.4645 -11.3815 0.0312 32 1 -1.6852 -12.3129 0.0348 33 1 -2.2522 -9.9287 0.0201 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344600485.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:44 Heat of formation + Delta-G solvation = -66.428798 kcal Electronic energy + Delta-G solvation = -19159.811508 eV Core-core repulsion = 15804.089877 eV Total energy + Delta-G solvation = -3355.721631 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.063 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.95805 -41.13352 -40.36900 -36.82735 -36.10762 -34.89265 -32.07216 -31.90467 -30.39832 -27.20933 -25.48510 -24.39472 -23.16650 -22.41470 -21.23671 -19.71391 -18.55807 -18.27490 -17.96201 -17.31338 -16.75013 -16.64579 -16.60843 -16.42235 -16.00186 -15.27294 -15.15654 -14.92596 -14.51514 -14.43171 -14.27219 -14.15821 -13.39122 -13.26155 -12.95353 -12.56395 -12.33987 -12.31272 -12.11110 -11.96622 -11.73429 -11.54167 -11.21045 -10.85034 -10.61806 -10.24122 -9.66986 -8.89457 -8.24699 -6.35530 -0.93293 -0.05610 0.20865 0.66880 0.74758 1.42256 1.44488 1.52389 1.91989 1.98626 2.41801 2.42091 3.08846 3.10188 3.44655 3.59630 3.80080 3.94890 4.11304 4.36494 4.43624 4.44176 4.52448 4.69371 4.79575 4.83207 5.01442 5.02149 5.09704 5.11227 5.42276 5.53701 5.67854 5.75500 6.12659 6.34779 6.76762 6.95735 7.33846 8.87071 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.046641 B = 0.002654 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.190931 B =10548.954066 C =11128.666628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.061 0.939 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.710 5.710 12 C 0.579 3.421 13 O -0.569 6.569 14 C -0.238 4.238 15 C -0.039 4.039 16 C -0.075 4.075 17 C -0.109 4.109 18 C 0.092 3.908 19 F -0.140 7.140 20 C -0.113 4.113 21 C -0.054 4.054 22 C -0.150 4.150 23 S 0.161 5.839 24 H 0.266 0.734 25 H 0.009 0.991 26 H 0.009 0.991 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.406 0.594 30 H 0.159 0.841 31 H 0.156 0.844 32 H 0.176 0.824 33 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.944 -24.823 0.054 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.079 0.921 9 C -0.016 4.016 10 C 0.016 3.984 11 N -0.360 5.360 12 C 0.366 3.634 13 O -0.450 6.450 14 C -0.356 4.356 15 C -0.072 4.072 16 C -0.083 4.083 17 C -0.130 4.130 18 C 0.070 3.930 19 F -0.119 7.119 20 C -0.136 4.136 21 C -0.076 4.076 22 C -0.267 4.267 23 S 0.430 5.570 24 H 0.075 0.925 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.242 0.758 30 H 0.176 0.824 31 H 0.174 0.826 32 H 0.194 0.806 33 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.387 -23.528 0.045 24.137 hybrid contribution 1.273 -0.055 0.007 1.274 sum -4.115 -23.584 0.052 23.940 Atomic orbital electron populations 1.70048 1.07556 1.28135 1.50810 1.25874 0.95799 1.03113 0.94347 0.85491 0.78292 0.78074 0.79150 1.19318 1.20621 1.19310 1.21415 0.93663 0.91729 1.51807 0.92067 1.19150 0.94226 0.91701 0.96497 1.21381 0.95140 0.81235 1.00610 1.46067 1.10783 1.05777 1.73352 1.17451 0.86641 0.83107 0.76247 1.90775 1.14276 1.87681 1.52292 1.23599 0.99186 0.96774 1.16075 1.20320 1.02126 0.89241 0.95541 1.17890 0.91560 0.93617 1.05257 1.20853 1.01034 0.89992 1.01095 1.17191 0.94147 0.77653 1.03968 1.91531 1.94113 1.32165 1.94075 1.21459 0.95194 0.96974 0.99929 1.20713 0.99179 0.90160 0.97540 1.23324 0.97454 0.98074 1.07851 1.84194 0.98928 0.98310 1.75598 0.92480 0.97223 0.97222 0.92704 0.92696 0.75841 0.82381 0.82641 0.80627 0.81292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.00 13.29 21.45 0.28 -53.71 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.97 43.28 29.54 68.60 2.03 45.31 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.55 -30.37 9.11 25.60 0.23 -30.13 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.02 1.09 5.09 29.85 0.15 1.24 16 10 C 0.14 6.00 5.61 86.38 0.48 6.48 16 11 N -0.71 -25.79 5.55 -466.77 -2.59 -28.38 16 12 C 0.58 20.61 7.79 86.54 0.67 21.28 16 13 O -0.57 -23.89 16.72 -4.17 -0.07 -23.96 16 14 C -0.24 -6.62 6.32 23.54 0.15 -6.47 16 15 C -0.04 -0.96 9.79 21.77 0.21 -0.74 16 16 C -0.07 -1.52 5.87 -21.49 -0.13 -1.65 16 17 C -0.11 -1.81 9.99 22.60 0.23 -1.58 16 18 C 0.09 1.37 7.22 21.99 0.16 1.53 16 19 F -0.14 -2.25 17.25 44.97 0.78 -1.47 16 20 C -0.11 -1.26 10.01 22.29 0.22 -1.04 16 21 C -0.05 -0.68 10.07 22.47 0.23 -0.45 16 22 C -0.15 -2.81 6.50 23.10 0.15 -2.66 16 23 S 0.16 3.49 22.26 -56.49 -1.26 2.23 16 24 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 25 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 27 H 0.05 2.42 8.14 -2.38 -0.02 2.40 16 28 H 0.05 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.41 13.10 7.52 -92.71 -0.70 12.41 16 30 H 0.16 3.70 7.96 -2.91 -0.02 3.68 16 31 H 0.16 2.07 8.06 -2.91 -0.02 2.04 16 32 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16 33 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -66.55 313.01 2.85 -63.70 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 0.46 Total: 9.58 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 3.23 Total: -13.29 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -2.31 Total: -82.09 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.07 Total: -23.96 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.78 Total: -1.47 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.26 Total: 2.23 kcal Total: -66.55 2.85 -63.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344600485.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.730 kcal (2) G-P(sol) polarization free energy of solvation -66.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds