Wall clock time and date at job start Tue Mar 31 2020 07:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30313 * 118.71569 * 2 1 4 4 C 1.33382 * 122.80315 * 179.70091 * 3 2 1 5 5 C 1.38141 * 119.91414 * 0.58846 * 4 3 2 6 6 C 1.47985 * 121.18372 * 179.74254 * 5 4 3 7 7 N 1.30974 * 126.44144 * 179.68858 * 6 5 4 8 8 O 1.21288 * 110.05410 * 180.02562 * 7 6 5 9 9 C 1.33688 * 110.06668 * 0.02562 * 8 7 6 10 10 C 1.50703 * 126.41010 * 179.97438 * 9 8 7 11 11 S 1.81000 * 109.47042 * 270.02379 * 10 9 8 12 12 C 1.76199 * 99.99871 * 180.02562 * 11 10 9 13 13 H 1.08009 * 120.00150 * 359.72084 * 12 11 10 14 14 C 1.38795 * 120.00161 * 180.02562 * 12 11 10 15 15 N 1.31634 * 120.00230 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00277 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47086 * 59.99722 * 16 14 12 18 18 H 1.48503 * 109.47155 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47243 * 299.99660 * 16 14 12 20 20 N 1.30934 * 107.17782 * 0.26069 * 9 8 7 21 21 C 1.47336 * 117.63999 * 359.46224 * 5 4 3 22 22 N 1.31214 * 121.25395 * 180.27823 * 21 5 4 23 23 N 1.34906 * 118.71119 * 180.02562 * 2 1 3 24 24 H 0.97002 * 120.21704 * 0.02562 * 23 2 1 25 25 H 1.08996 * 109.47081 * 269.97653 * 1 2 3 26 26 H 1.08998 * 109.47274 * 29.97931 * 1 2 3 27 27 H 1.08999 * 109.47545 * 149.97838 * 1 2 3 28 28 H 1.08008 * 120.04079 * 180.32454 * 4 3 2 29 29 H 1.09000 * 109.46904 * 150.02239 * 10 9 8 30 30 H 1.09005 * 109.47194 * 30.02281 * 10 9 8 31 31 H 0.96991 * 120.00676 * 180.02562 * 15 14 12 32 32 H 0.97001 * 120.00334 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1331 1.1429 0.0000 4 6 3.4635 1.2379 0.0059 5 6 4.2360 0.0928 0.0000 6 6 5.7141 0.1656 0.0005 7 7 6.5430 -0.8485 0.0011 8 8 7.6883 -0.4495 0.0019 9 6 7.7084 0.8872 0.0026 10 6 8.9345 1.7634 0.0043 11 16 9.4240 2.1128 1.7115 12 6 10.8378 3.1241 1.4235 13 1 11.1493 3.3418 0.4124 14 6 11.5550 3.6360 2.4959 15 7 11.1788 3.3663 3.7281 16 14 13.0535 4.7088 2.1906 17 1 12.6514 5.9131 1.4203 18 1 13.6371 5.1255 3.4910 19 1 14.0628 3.9411 1.4178 20 7 6.4634 1.2926 0.0078 21 6 3.5363 -1.2038 -0.0005 22 7 4.2000 -2.3357 -0.0005 23 7 2.1551 -1.1832 -0.0005 24 1 1.6544 -2.0140 -0.0013 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 3.9361 2.2091 0.0109 29 1 8.7131 2.6992 -0.5090 30 1 9.7480 1.2510 -0.5093 31 1 11.6797 3.7243 4.4776 32 1 3.7208 -3.1790 -0.0012 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350834072.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:12:58 Heat of formation + Delta-G solvation = 101.478666 kcal Electronic energy + Delta-G solvation = -19583.274767 eV Core-core repulsion = 16287.046863 eV Total energy + Delta-G solvation = -3296.227904 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.069 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -46.43337 -41.98300 -37.16846 -36.68733 -35.41693 -34.59253 -33.93858 -31.57448 -30.07373 -29.52675 -27.66161 -25.78822 -24.66792 -23.86234 -22.43048 -20.11350 -19.49784 -19.19266 -19.12571 -18.12908 -17.54169 -16.86996 -16.51294 -16.32268 -16.09261 -15.64552 -15.10582 -14.74738 -14.46188 -13.96029 -13.83009 -13.30011 -13.22192 -13.19375 -13.10844 -12.83805 -12.82496 -12.61943 -12.13385 -12.05398 -11.51976 -11.27637 -11.11447 -10.85938 -10.79720 -10.35440 -8.86100 -8.73283 -8.35890 -6.15540 -0.72258 0.08264 0.74051 1.18931 1.41784 1.48321 1.52156 1.55494 1.69891 1.88209 2.25776 2.48929 2.52740 2.80657 3.00509 3.12635 3.16572 3.30405 3.72758 3.90451 4.18451 4.35759 4.47857 4.56928 4.59517 4.70639 4.77160 4.83721 4.93399 5.12817 5.19891 5.44759 5.98030 6.21046 6.76055 7.06569 7.13696 7.20640 8.73487 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.034618 B = 0.003000 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.633225 B = 9331.423326 C = 9754.432574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.427 3.573 3 N -0.574 5.574 4 C 0.217 3.783 5 C -0.174 4.174 6 C 0.226 3.774 7 N -0.366 5.366 8 O 0.066 5.934 9 C 0.215 3.785 10 C -0.015 4.015 11 S -0.153 6.153 12 C -0.536 4.536 13 H 0.091 0.909 14 C 0.017 3.983 15 N -0.911 5.911 16 Si 0.999 3.001 17 H -0.261 1.261 18 H -0.281 1.281 19 H -0.261 1.261 20 N -0.486 5.486 21 C 0.426 3.574 22 N -0.747 5.747 23 N -0.636 5.636 24 H 0.436 0.564 25 H 0.121 0.879 26 H 0.112 0.888 27 H 0.118 0.882 28 H 0.177 0.823 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.272 0.728 32 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.142 -6.967 -9.632 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.162 3.838 3 N -0.298 5.298 4 C 0.074 3.926 5 C -0.185 4.185 6 C -0.044 4.044 7 N -0.075 5.075 8 O 0.009 5.991 9 C -0.006 4.006 10 C -0.164 4.164 11 S 0.074 5.926 12 C -0.684 4.684 13 H 0.109 0.891 14 C -0.188 4.188 15 N -0.547 5.547 16 Si 0.821 3.179 17 H -0.186 1.186 18 H -0.206 1.206 19 H -0.186 1.186 20 N -0.221 5.221 21 C 0.151 3.849 22 N -0.380 5.380 23 N -0.266 5.266 24 H 0.278 0.722 25 H 0.139 0.861 26 H 0.131 0.869 27 H 0.137 0.863 28 H 0.194 0.806 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.081 0.919 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -23.352 -7.328 -8.482 25.903 hybrid contribution 1.263 -0.474 -0.825 1.582 sum -22.089 -7.802 -9.307 25.207 Atomic orbital electron populations 1.21318 0.80985 1.07532 1.06975 1.24230 0.98387 0.80287 0.80871 1.68074 1.09105 1.24534 1.28092 1.22950 0.88443 0.97779 0.83467 1.18503 0.86208 0.91932 1.21904 1.23434 0.96283 0.83536 1.01166 1.75239 0.88937 1.21952 1.21407 1.85325 1.24547 1.23284 1.65992 1.27997 0.95355 0.82749 0.94491 1.21758 0.91655 0.99364 1.03625 1.85297 1.37800 1.66956 1.02590 1.23070 1.12965 1.35793 0.96557 0.89051 1.26101 1.01296 0.97492 0.93948 1.70146 1.41030 1.44316 0.99220 0.84985 0.76922 0.78240 0.77777 1.18601 1.20581 1.18594 1.71952 1.00615 1.27523 1.22019 1.20718 0.79749 0.93329 0.91114 1.70677 1.37798 0.99528 1.29966 1.44540 1.06167 1.11291 1.64598 0.72165 0.86101 0.86909 0.86330 0.80620 0.85710 0.85886 0.91879 0.83819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.06 10.21 71.23 0.73 0.66 16 2 C 0.43 5.17 7.70 138.23 1.06 6.23 16 3 N -0.57 -11.29 10.17 -186.26 -1.89 -13.18 16 4 C 0.22 5.62 10.94 84.43 0.92 6.54 16 5 C -0.17 -5.42 6.09 -18.32 -0.11 -5.53 16 6 C 0.23 8.76 7.83 137.06 1.07 9.83 16 7 N -0.37 -15.26 11.01 -58.80 -0.65 -15.91 16 8 O 0.07 2.74 11.29 74.44 0.84 3.58 16 9 C 0.22 8.68 7.75 88.35 0.68 9.36 16 10 C -0.01 -0.60 6.30 71.24 0.45 -0.15 16 11 S -0.15 -8.01 21.42 -56.49 -1.21 -9.22 16 12 C -0.54 -29.31 9.50 67.95 0.65 -28.67 16 13 H 0.09 4.60 7.80 -2.91 -0.02 4.58 16 14 C 0.02 0.92 5.49 84.86 0.47 1.39 16 15 N -0.91 -54.17 13.22 21.65 0.29 -53.88 16 16 Si 1.00 42.42 29.55 68.60 2.03 44.45 16 17 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 18 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 19 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 20 N -0.49 -19.38 11.33 -302.25 -3.43 -22.81 16 21 C 0.43 10.90 8.03 135.89 1.09 11.99 16 22 N -0.75 -21.63 12.81 -50.86 -0.65 -22.28 16 23 N -0.64 -8.40 5.39 -179.36 -0.97 -9.37 16 24 H 0.44 2.03 8.74 -92.71 -0.81 1.22 16 25 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 26 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 27 H 0.12 -0.63 8.12 -2.39 -0.02 -0.65 16 28 H 0.18 4.55 7.93 -2.91 -0.02 4.53 16 29 H 0.12 4.59 8.14 -2.40 -0.02 4.57 16 30 H 0.12 4.36 8.14 -2.39 -0.02 4.34 16 31 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 32 H 0.34 7.55 8.90 -92.71 -0.82 6.73 16 Total: -1.00 -79.11 309.73 0.94 -78.17 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -0.43 Total: 8.79 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 7.01 Total: 11.66 kcal Atomic # 7 Polarization: -130.13 SS G_CDS: -7.30 Total: -137.43 kcal Atomic # 8 Polarization: 2.74 SS G_CDS: 0.84 Total: 3.58 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.21 Total: -9.22 kcal Total: -79.11 0.94 -78.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350834072.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.647 kcal (2) G-P(sol) polarization free energy of solvation -79.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds