Wall clock time and date at job start Tue Mar 31 2020 06:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35815 * 116.99459 * 2 1 4 4 C 1.38685 * 120.55297 * 0.02562 * 3 2 1 5 5 N 1.31790 * 120.78896 * 179.97438 * 4 3 2 6 6 C 1.31913 * 122.06451 * 0.03141 * 5 4 3 7 7 C 1.37995 * 121.01791 * 359.71212 * 6 5 4 8 8 C 1.39698 * 119.08667 * 0.53632 * 7 6 5 9 9 C 1.48380 * 120.92809 * 179.75542 * 8 7 6 10 10 N 1.30771 * 126.41674 * 179.69422 * 9 8 7 11 11 O 1.21285 * 110.09934 * 180.02562 * 10 9 8 12 12 C 1.33679 * 110.02569 * 0.02562 * 11 10 9 13 13 C 1.50703 * 126.43391 * 179.97438 * 12 11 10 14 14 S 1.81000 * 109.47042 * 270.02680 * 13 12 11 15 15 C 1.76199 * 99.99871 * 180.02562 * 14 13 12 16 16 H 1.08009 * 120.00150 * 359.72084 * 15 14 13 17 17 C 1.38795 * 120.00161 * 180.02562 * 15 14 13 18 18 N 1.31634 * 120.00230 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00277 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47477 * 89.99967 * 19 17 15 21 21 H 1.48494 * 109.47201 * 209.99720 * 19 17 15 22 22 H 1.48498 * 109.47011 * 329.99693 * 19 17 15 23 23 N 1.30968 * 107.12656 * 0.22571 * 12 11 10 24 24 H 1.08997 * 109.47201 * 60.00135 * 1 2 3 25 25 H 1.09004 * 109.46540 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47308 * 299.99756 * 1 2 3 27 27 H 1.08000 * 119.60637 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.49282 * 180.02562 * 6 5 4 29 29 H 1.08002 * 120.45247 * 180.28816 * 7 6 5 30 30 H 1.09000 * 109.46904 * 150.02540 * 13 12 11 31 31 H 1.09005 * 109.47194 * 30.02582 * 13 12 11 32 32 H 0.96991 * 120.00676 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2102 0.0000 4 6 1.3013 2.3805 0.0005 5 7 1.8947 3.5572 0.0010 6 6 3.2082 3.6792 0.0005 7 6 4.0256 2.5674 0.0052 8 6 3.4443 1.2971 -0.0007 9 6 4.2844 0.0740 -0.0014 10 7 3.8565 -1.1617 -0.0010 11 8 4.7964 -1.9282 -0.0012 12 6 5.9450 -1.2442 -0.0012 13 6 7.3343 -1.8280 -0.0009 14 16 7.8900 -2.0621 1.7058 15 6 9.4927 -2.7345 1.4162 16 1 9.8406 -2.8849 0.4048 17 6 10.3056 -3.0768 2.4878 18 7 9.8796 -2.8987 3.7204 19 14 12.0050 -3.7891 2.1808 20 1 12.9969 -2.6867 2.1011 21 1 12.3678 -4.7017 3.2946 22 1 12.0014 -4.5450 0.9026 23 7 5.6359 0.0285 0.0040 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2227 2.3268 0.0005 28 1 3.6507 4.6644 0.0013 29 1 5.0999 2.6779 0.0094 30 1 8.0142 -1.1481 -0.5143 31 1 7.3247 -2.7891 -0.5149 32 1 10.4478 -3.1376 4.4693 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350927602.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:20 Heat of formation + Delta-G solvation = 70.463043 kcal Electronic energy + Delta-G solvation = -19769.454469 eV Core-core repulsion = 16439.588875 eV Total energy + Delta-G solvation = -3329.865594 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.24655 -40.86780 -38.33363 -35.83802 -33.77572 -32.58019 -31.90030 -30.71779 -28.51545 -27.77905 -25.64862 -25.32791 -23.45443 -22.71722 -21.44358 -18.54998 -17.98421 -17.87263 -17.34557 -17.01790 -16.24404 -16.13935 -14.92740 -14.69547 -14.57810 -14.44861 -14.24626 -13.91971 -13.88606 -13.11332 -12.82853 -12.47142 -12.18114 -12.05098 -11.93956 -11.67020 -11.18494 -11.13072 -11.08599 -10.80286 -10.47596 -9.84521 -9.81730 -9.27249 -9.19838 -8.66697 -8.53888 -6.75691 -6.37159 -4.12088 0.50558 0.88633 1.46219 2.52332 2.85523 3.02640 3.16384 3.19634 3.24180 3.37064 3.48636 3.60002 4.00642 4.06509 4.21173 4.40948 4.61513 4.83894 4.85637 5.00219 5.01539 5.09154 5.20202 5.26803 5.36103 5.45663 5.61210 5.85555 5.87869 6.09165 6.20567 6.24536 6.90238 7.47086 7.63822 8.21440 8.39016 9.08806 10.70818 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.032168 B = 0.003165 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.222876 B = 8843.477063 C = 9294.127948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.288 6.288 3 C 0.106 3.894 4 C 0.016 3.984 5 N -0.442 5.442 6 C 0.058 3.942 7 C -0.088 4.088 8 C -0.001 4.001 9 C 0.198 3.802 10 N -0.354 5.354 11 O 0.085 5.915 12 C 0.229 3.771 13 C -0.043 4.043 14 S -0.081 6.081 15 C -0.527 4.527 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.867 5.867 19 Si 0.925 3.075 20 H -0.275 1.275 21 H -0.281 1.281 22 H -0.270 1.270 23 N -0.472 5.472 24 H 0.058 0.942 25 H 0.105 0.895 26 H 0.059 0.941 27 H 0.164 0.836 28 H 0.167 0.833 29 H 0.157 0.843 30 H 0.112 0.888 31 H 0.104 0.896 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.130 8.007 -8.450 19.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.198 6.198 3 C 0.055 3.945 4 C -0.143 4.143 5 N -0.152 5.152 6 C -0.098 4.098 7 C -0.110 4.110 8 C -0.012 4.012 9 C -0.072 4.072 10 N -0.060 5.060 11 O 0.022 5.978 12 C 0.009 3.991 13 C -0.192 4.192 14 S 0.144 5.856 15 C -0.675 4.675 16 H 0.099 0.901 17 C -0.135 4.135 18 N -0.502 5.502 19 Si 0.750 3.250 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.194 1.194 23 N -0.206 5.206 24 H 0.077 0.923 25 H 0.124 0.876 26 H 0.077 0.923 27 H 0.181 0.819 28 H 0.184 0.816 29 H 0.175 0.825 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.830 8.939 -7.285 20.402 hybrid contribution 2.090 -1.478 -1.143 2.804 sum -14.740 7.460 -8.428 18.546 Atomic orbital electron populations 1.23194 0.78005 1.04733 1.01421 1.86313 1.21435 1.24819 1.87182 1.20077 0.91623 0.86732 0.96054 1.22842 1.00548 0.86519 1.04372 1.67426 1.12620 1.26375 1.08757 1.22621 0.88389 0.99039 0.99793 1.22222 1.02866 0.90226 0.95677 1.17043 0.88163 0.90117 1.05828 1.23364 0.88179 0.92033 1.03584 1.75019 1.09860 1.01645 1.19497 1.85329 1.11997 1.35087 1.65339 1.28157 0.92163 0.85474 0.93320 1.22007 0.85612 1.03527 1.08059 1.85232 1.20550 1.83418 0.96366 1.22709 0.99744 1.49080 0.95916 0.90119 1.25028 0.99123 0.95018 0.94339 1.69995 1.37258 1.44777 0.98169 0.86066 0.81784 0.78868 0.78238 1.20099 1.20689 1.19450 1.71988 1.09696 1.17664 1.21289 0.92348 0.87622 0.92273 0.81931 0.81618 0.82546 0.86994 0.87772 0.91936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.82 101.05 0.99 1.16 16 2 O -0.29 -3.74 9.01 -19.16 -0.17 -3.91 16 3 C 0.11 1.40 6.72 -38.70 -0.26 1.14 16 4 C 0.02 0.18 10.22 -17.40 -0.18 0.00 16 5 N -0.44 -5.21 10.34 -13.19 -0.14 -5.35 16 6 C 0.06 0.63 11.16 -17.61 -0.20 0.43 16 7 C -0.09 -1.10 9.79 -39.13 -0.38 -1.48 16 8 C 0.00 -0.02 5.92 -104.46 -0.62 -0.64 16 9 C 0.20 3.52 7.81 -156.12 -1.22 2.30 16 10 N -0.35 -6.54 10.84 30.97 0.34 -6.21 16 11 O 0.09 1.58 11.29 18.01 0.20 1.78 16 12 C 0.23 4.27 7.75 -12.99 -0.10 4.17 16 13 C -0.04 -0.82 6.30 36.01 0.23 -0.59 16 14 S -0.08 -2.01 21.42 -107.50 -2.30 -4.32 16 15 C -0.53 -13.99 9.50 30.94 0.29 -13.69 16 16 H 0.08 2.01 7.80 -52.48 -0.41 1.60 16 17 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 18 N -0.87 -24.80 13.22 55.49 0.73 -24.07 16 19 Si 0.92 20.39 29.55 -169.99 -5.02 15.36 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 23 N -0.47 -8.80 11.36 -9.88 -0.11 -8.91 16 24 H 0.06 0.34 7.68 -51.93 -0.40 -0.06 16 25 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.36 7.68 -51.93 -0.40 -0.04 16 27 H 0.16 1.28 6.32 -52.49 -0.33 0.94 16 28 H 0.17 1.25 8.06 -52.49 -0.42 0.82 16 29 H 0.16 1.83 7.97 -52.49 -0.42 1.41 16 30 H 0.11 1.99 8.14 -51.92 -0.42 1.57 16 31 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 32 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 307.09 15.07 4.63 4.63 Total: -1.00 -32.09 307.09 -6.17 -38.26 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -2.78 Total: -1.98 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.54 Total: -5.29 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.82 Total: -44.53 kcal Atomic # 8 Polarization: -2.16 SS G_CDS: 0.03 Total: -2.13 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -2.30 Total: -4.32 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.09 -6.17 -38.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350927602.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.720 kcal (2) G-P(sol) polarization free energy of solvation -32.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds