Wall clock time and date at job start Tue Mar 31 2020 06:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35815 * 116.99459 * 2 1 4 4 C 1.38685 * 120.55297 * 0.02562 * 3 2 1 5 5 N 1.31790 * 120.78896 * 179.97438 * 4 3 2 6 6 C 1.31913 * 122.06451 * 0.03141 * 5 4 3 7 7 C 1.37995 * 121.01791 * 359.71212 * 6 5 4 8 8 C 1.39698 * 119.08667 * 0.53632 * 7 6 5 9 9 C 1.48380 * 120.92809 * 179.75542 * 8 7 6 10 10 N 1.30771 * 126.41674 * 179.69422 * 9 8 7 11 11 O 1.21285 * 110.09934 * 180.02562 * 10 9 8 12 12 C 1.33679 * 110.02569 * 0.02562 * 11 10 9 13 13 C 1.50703 * 126.43391 * 179.97438 * 12 11 10 14 14 S 1.81000 * 109.47042 * 270.02680 * 13 12 11 15 15 C 1.76199 * 99.99871 * 180.02562 * 14 13 12 16 16 H 1.08009 * 120.00150 * 359.72084 * 15 14 13 17 17 C 1.38795 * 120.00161 * 180.02562 * 15 14 13 18 18 N 1.31634 * 120.00230 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00277 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47477 * 89.99967 * 19 17 15 21 21 H 1.48494 * 109.47201 * 209.99720 * 19 17 15 22 22 H 1.48498 * 109.47011 * 329.99693 * 19 17 15 23 23 N 1.30968 * 107.12656 * 0.22571 * 12 11 10 24 24 H 1.08997 * 109.47201 * 60.00135 * 1 2 3 25 25 H 1.09004 * 109.46540 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47308 * 299.99756 * 1 2 3 27 27 H 1.08000 * 119.60637 * 359.97438 * 4 3 2 28 28 H 1.07999 * 119.49282 * 180.02562 * 6 5 4 29 29 H 1.08002 * 120.45247 * 180.28816 * 7 6 5 30 30 H 1.09000 * 109.46904 * 150.02540 * 13 12 11 31 31 H 1.09005 * 109.47194 * 30.02582 * 13 12 11 32 32 H 0.96991 * 120.00676 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2102 0.0000 4 6 1.3013 2.3805 0.0005 5 7 1.8947 3.5572 0.0010 6 6 3.2082 3.6792 0.0005 7 6 4.0256 2.5674 0.0052 8 6 3.4443 1.2971 -0.0007 9 6 4.2844 0.0740 -0.0014 10 7 3.8565 -1.1617 -0.0010 11 8 4.7964 -1.9282 -0.0012 12 6 5.9450 -1.2442 -0.0012 13 6 7.3343 -1.8280 -0.0009 14 16 7.8900 -2.0621 1.7058 15 6 9.4927 -2.7345 1.4162 16 1 9.8406 -2.8849 0.4048 17 6 10.3056 -3.0768 2.4878 18 7 9.8796 -2.8987 3.7204 19 14 12.0050 -3.7891 2.1808 20 1 12.9969 -2.6867 2.1011 21 1 12.3678 -4.7017 3.2946 22 1 12.0014 -4.5450 0.9026 23 7 5.6359 0.0285 0.0040 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.2227 2.3268 0.0005 28 1 3.6507 4.6644 0.0013 29 1 5.0999 2.6779 0.0094 30 1 8.0142 -1.1481 -0.5143 31 1 7.3247 -2.7891 -0.5149 32 1 10.4478 -3.1376 4.4693 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350927602.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:20 Heat of formation + Delta-G solvation = 48.017582 kcal Electronic energy + Delta-G solvation = -19770.427777 eV Core-core repulsion = 16439.588875 eV Total energy + Delta-G solvation = -3330.838902 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.062 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.66436 -41.76867 -39.19860 -37.20084 -35.09751 -34.59955 -33.04848 -31.61582 -30.00144 -28.46325 -27.68236 -26.49423 -24.62465 -23.75869 -22.69385 -20.02992 -19.32281 -19.28903 -18.58397 -18.01035 -17.38003 -16.94770 -16.88781 -16.35170 -15.75080 -15.55338 -15.36591 -14.93412 -14.77743 -14.74806 -14.36984 -13.49726 -13.31978 -13.26464 -13.16896 -12.88738 -12.83057 -12.80266 -12.44926 -12.24623 -12.04920 -11.37072 -11.14864 -10.72381 -10.57332 -10.32463 -9.55997 -8.76069 -8.38170 -6.18013 -0.60021 -0.01207 0.01836 1.15423 1.40684 1.45679 1.54457 1.60170 1.77401 2.08366 2.21350 2.25744 2.65776 2.75090 2.99014 3.22997 3.41591 3.47489 3.70323 3.90830 4.09350 4.15548 4.24885 4.30562 4.34278 4.48237 4.56319 4.66406 4.70924 4.78647 4.98901 5.38107 5.43451 6.09319 6.19269 6.75485 6.97027 7.04874 8.71308 Molecular weight = 293.06amu Principal moments of inertia in cm(-1) A = 0.032168 B = 0.003165 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.222876 B = 8843.477063 C = 9294.127948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.316 6.316 3 C 0.102 3.898 4 C 0.025 3.975 5 N -0.449 5.449 6 C 0.064 3.936 7 C -0.090 4.090 8 C -0.041 4.041 9 C 0.202 3.798 10 N -0.367 5.367 11 O 0.078 5.922 12 C 0.224 3.776 13 C -0.018 4.018 14 S -0.150 6.150 15 C -0.536 4.536 16 H 0.092 0.908 17 C 0.018 3.982 18 N -0.910 5.910 19 Si 0.999 3.001 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.256 1.256 23 N -0.480 5.480 24 H 0.079 0.921 25 H 0.115 0.885 26 H 0.075 0.925 27 H 0.196 0.804 28 H 0.200 0.800 29 H 0.159 0.841 30 H 0.126 0.874 31 H 0.127 0.873 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.601 8.858 -9.656 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.227 6.227 3 C 0.051 3.949 4 C -0.134 4.134 5 N -0.159 5.159 6 C -0.091 4.091 7 C -0.111 4.111 8 C -0.051 4.051 9 C -0.068 4.068 10 N -0.075 5.075 11 O 0.018 5.982 12 C 0.003 3.997 13 C -0.167 4.167 14 S 0.076 5.924 15 C -0.684 4.684 16 H 0.110 0.890 17 C -0.187 4.187 18 N -0.546 5.546 19 Si 0.821 3.179 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.180 1.180 23 N -0.215 5.215 24 H 0.097 0.903 25 H 0.134 0.866 26 H 0.094 0.906 27 H 0.213 0.787 28 H 0.217 0.783 29 H 0.176 0.824 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.314 9.781 -8.504 21.627 hybrid contribution 2.045 -1.652 -0.815 2.753 sum -15.268 8.129 -9.319 19.648 Atomic orbital electron populations 1.23532 0.75456 1.06113 1.03206 1.86276 1.24207 1.25132 1.87090 1.20216 0.91169 0.87619 0.95932 1.23315 1.01870 0.85461 1.02716 1.67541 1.13034 1.26574 1.08738 1.23108 0.88002 0.99816 0.98216 1.22346 1.03267 0.89933 0.95564 1.17386 0.89103 0.89864 1.08768 1.23896 0.88053 0.92809 1.02060 1.75003 1.09765 1.02070 1.20678 1.85309 1.11988 1.35291 1.65629 1.28069 0.92144 0.85675 0.93812 1.21818 0.85786 1.05193 1.03888 1.85298 1.21123 1.83722 1.02261 1.23103 1.00049 1.48677 0.96586 0.88977 1.26083 1.03418 0.95271 0.93963 1.70143 1.38974 1.46269 0.99247 0.84938 0.76339 0.78152 0.78518 1.19413 1.20522 1.18012 1.71982 1.10478 1.17672 1.21372 0.90292 0.86637 0.90628 0.78726 0.78348 0.82367 0.85572 0.85510 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.82 113.37 1.11 1.25 16 2 O -0.32 -7.97 9.01 -91.48 -0.82 -8.79 16 3 C 0.10 2.58 6.72 22.84 0.15 2.73 16 4 C 0.03 0.50 10.22 84.81 0.87 1.37 16 5 N -0.45 -9.45 10.34 -195.65 -2.02 -11.47 16 6 C 0.06 1.25 11.16 84.62 0.94 2.19 16 7 C -0.09 -2.15 9.79 22.56 0.22 -1.93 16 8 C -0.04 -1.22 5.92 -19.76 -0.12 -1.34 16 9 C 0.20 7.23 7.81 137.28 1.07 8.30 16 10 N -0.37 -13.74 10.84 -59.13 -0.64 -14.38 16 11 O 0.08 2.92 11.29 74.53 0.84 3.76 16 12 C 0.22 8.37 7.75 88.36 0.68 9.06 16 13 C -0.02 -0.67 6.30 71.24 0.45 -0.22 16 14 S -0.15 -7.58 21.42 -56.49 -1.21 -8.79 16 15 C -0.54 -28.47 9.50 67.95 0.65 -27.82 16 16 H 0.09 4.50 7.80 -2.91 -0.02 4.48 16 17 C 0.02 0.96 5.49 84.86 0.47 1.43 16 18 N -0.91 -52.91 13.22 21.65 0.29 -52.62 16 19 Si 1.00 41.42 29.55 68.60 2.03 43.44 16 20 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 21 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 23 N -0.48 -18.01 11.36 -302.50 -3.44 -21.44 16 24 H 0.08 0.71 7.68 -2.39 -0.02 0.69 16 25 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.08 0.74 7.68 -2.39 -0.02 0.72 16 27 H 0.20 2.39 6.32 -2.91 -0.02 2.38 16 28 H 0.20 2.38 8.06 -2.91 -0.02 2.35 16 29 H 0.16 3.62 7.97 -2.91 -0.02 3.60 16 30 H 0.13 4.36 8.14 -2.40 -0.02 4.34 16 31 H 0.13 4.15 8.14 -2.39 -0.02 4.13 16 32 H 0.27 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -70.06 307.09 2.69 -67.37 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 1.17 Total: 7.90 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 6.50 Total: -4.97 kcal Atomic # 7 Polarization: -94.11 SS G_CDS: -5.81 Total: -99.92 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: 0.02 Total: -5.03 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: -7.58 SS G_CDS: -1.21 Total: -8.79 kcal Total: -70.06 2.69 -67.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350927602.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.385 kcal (2) G-P(sol) polarization free energy of solvation -70.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds