Wall clock time and date at job start Tue Mar 31 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00108 * 2 1 4 4 H 1.48493 * 109.46993 * 240.00286 * 3 2 1 5 5 H 1.48493 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46756 * 120.00464 * 3 2 1 7 7 C 1.38985 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99879 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99763 * 179.97438 * 9 7 2 11 11 O 1.21654 * 119.99967 * 0.02562 * 10 9 7 12 12 C 1.47241 * 119.99649 * 179.97438 * 10 9 7 13 13 C 1.36383 * 122.56119 * 180.02562 * 12 10 9 14 14 S 1.71007 * 108.99290 * 180.02562 * 13 12 10 15 15 C 1.75969 * 90.63562 * 0.02562 * 14 13 12 16 16 C 1.47861 * 125.21898 * 180.26727 * 15 14 13 17 17 N 1.32821 * 119.75673 * 179.41230 * 16 15 14 18 18 C 1.31666 * 121.62296 * 179.74768 * 17 16 15 19 19 C 1.38376 * 120.97101 * 0.53520 * 18 17 16 20 20 C 1.38692 * 119.42308 * 359.74095 * 19 18 17 21 21 C 1.38684 * 118.49642 * 359.97438 * 20 19 18 22 22 F 1.35097 * 120.49841 * 179.97438 * 21 20 19 23 23 N 1.29804 * 109.56212 * 359.97438 * 15 14 13 24 24 H 0.97003 * 119.99532 * 359.97438 * 1 2 3 25 25 H 0.96998 * 119.99834 * 0.02562 * 9 7 2 26 26 H 1.08009 * 125.50361 * 0.03388 * 13 12 10 27 27 H 1.07996 * 119.51164 * 180.27476 * 18 17 16 28 28 H 1.07997 * 120.29303 * 179.71210 * 19 18 17 29 29 H 1.07993 * 120.75030 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0090 -1.2037 -0.0005 8 1 3.0890 -1.2037 -0.0010 9 7 1.3242 -2.3896 -0.0005 10 6 1.9981 -3.5568 -0.0016 11 8 3.2147 -3.5568 -0.0021 12 6 1.2618 -4.8319 -0.0010 13 6 1.8902 -6.0424 -0.0015 14 16 0.7115 -7.2813 -0.0013 15 6 -0.5768 -6.0826 -0.0014 16 6 -2.0239 -6.3861 0.0044 17 7 -2.9057 -5.3929 0.0156 18 6 -4.2025 -5.6210 0.0161 19 6 -4.6982 -6.9129 0.0160 20 6 -3.8145 -7.9818 0.0099 21 6 -2.4536 -7.7152 0.0035 22 9 -1.5569 -8.7257 -0.0021 23 7 -0.0618 -4.8911 -0.0010 24 1 -0.4849 0.8401 0.0004 25 1 0.3543 -2.3895 -0.0005 26 1 2.9596 -6.1940 -0.0018 27 1 -4.8892 -4.7876 0.0208 28 1 -5.7640 -7.0874 0.0210 29 1 -4.1780 -8.9988 0.0092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351161567.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:53 Heat of formation + Delta-G solvation = 7.282602 kcal Electronic energy + Delta-G solvation = -19680.065501 eV Core-core repulsion = 16223.999893 eV Total energy + Delta-G solvation = -3456.065608 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.037 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.33649 -40.31887 -39.38429 -37.30932 -34.03384 -33.01576 -31.87196 -31.25717 -29.34753 -26.28305 -25.28814 -23.79527 -23.27091 -20.94004 -19.08809 -18.35855 -17.84817 -17.72639 -17.08358 -16.66003 -16.21137 -15.51289 -15.00429 -14.58173 -14.53250 -14.29193 -13.84232 -13.65572 -13.46439 -13.36707 -12.75203 -12.62385 -12.41558 -11.69477 -11.33201 -11.10412 -10.46742 -10.34182 -10.27551 -9.80376 -9.75097 -9.56300 -9.56250 -9.14366 -8.59607 -8.21389 -8.01357 -6.50279 -3.83899 0.09339 0.76832 1.21385 1.35681 1.92352 2.63464 3.22819 3.23236 3.27927 3.48145 3.50928 3.92570 4.12566 4.21787 4.36309 4.38490 4.57230 4.83468 5.08416 5.21739 5.32699 5.40230 5.51184 5.63355 5.71636 5.97008 6.26098 6.61646 7.45982 7.57268 7.86703 8.01994 8.57220 9.08124 9.50019 10.03624 10.65081 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.004426 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.135900 B = 6324.159902 C = 7687.445925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.026 3.974 3 Si 0.937 3.063 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.298 4.298 8 H 0.108 0.892 9 N -0.521 5.521 10 C 0.487 3.513 11 O -0.599 6.599 12 C 0.045 3.955 13 C -0.237 4.237 14 S 0.181 5.819 15 C 0.053 3.947 16 C 0.185 3.815 17 N -0.416 5.416 18 C 0.101 3.899 19 C -0.143 4.143 20 C -0.103 4.103 21 C 0.055 3.945 22 F -0.118 7.118 23 N -0.387 5.387 24 H 0.277 0.723 25 H 0.405 0.595 26 H 0.189 0.811 27 H 0.171 0.829 28 H 0.149 0.851 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.613 -16.698 0.019 20.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.179 4.179 3 Si 0.763 3.237 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.428 4.428 8 H 0.126 0.874 9 N -0.153 5.153 10 C 0.272 3.728 11 O -0.486 6.486 12 C -0.091 4.091 13 C -0.380 4.380 14 S 0.436 5.564 15 C -0.223 4.223 16 C 0.044 3.956 17 N -0.124 5.124 18 C -0.058 4.058 19 C -0.164 4.164 20 C -0.129 4.129 21 C 0.031 3.969 22 F -0.097 7.097 23 N -0.102 5.102 24 H 0.087 0.913 25 H 0.241 0.759 26 H 0.206 0.794 27 H 0.189 0.811 28 H 0.167 0.833 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.892 -16.263 0.027 19.574 hybrid contribution 0.103 0.587 -0.005 0.596 sum -10.789 -15.676 0.022 19.030 Atomic orbital electron populations 1.69671 1.06113 1.28837 1.46935 1.25457 0.95703 1.00176 0.96576 0.85822 0.78802 0.79767 0.79314 1.19584 1.20722 1.19588 1.19843 0.93732 0.82120 1.47138 0.87382 1.41874 1.10343 1.04206 1.58915 1.16580 0.86578 0.81792 0.87850 1.90620 1.12456 1.86272 1.59298 1.21091 0.87086 0.96520 1.04447 1.26946 1.06459 0.95753 1.08819 1.83726 0.96014 1.09871 1.66821 1.25119 0.95457 0.91340 1.10386 1.18655 0.90372 0.87324 0.99262 1.67904 1.02568 1.33295 1.08657 1.23053 0.91256 0.96765 0.94764 1.22248 1.01447 0.92818 0.99930 1.21543 0.90366 1.01743 0.99252 1.18621 0.88026 0.84529 1.05689 1.91488 1.66438 1.58079 1.93687 1.66938 1.10558 1.22531 1.10220 0.91312 0.75903 0.79424 0.81147 0.83317 0.82954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.54 13.05 55.50 0.72 -23.82 15 2 C 0.03 0.70 5.50 -17.45 -0.10 0.61 15 3 Si 0.94 21.09 29.55 -169.99 -5.02 16.07 15 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 5 H -0.28 -6.15 7.11 56.52 0.40 -5.74 15 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 7 C -0.30 -8.64 9.68 -14.99 -0.15 -8.79 15 8 H 0.11 3.20 7.15 -52.49 -0.38 2.82 15 9 N -0.52 -14.68 5.28 -12.01 -0.06 -14.75 15 10 C 0.49 13.12 7.75 -12.60 -0.10 13.03 15 11 O -0.60 -17.43 16.25 5.23 0.08 -17.34 15 12 C 0.05 1.02 6.68 -84.59 -0.56 0.46 15 13 C -0.24 -4.38 10.63 30.06 0.32 -4.06 15 14 S 0.18 2.68 20.69 -107.50 -2.22 0.46 15 15 C 0.05 0.94 7.38 -14.47 -0.11 0.83 15 16 C 0.18 2.83 6.75 -82.96 -0.56 2.27 15 17 N -0.42 -6.44 10.25 -9.79 -0.10 -6.54 15 18 C 0.10 1.05 11.17 -17.57 -0.20 0.86 15 19 C -0.14 -1.06 10.11 -39.36 -0.40 -1.45 15 20 C -0.10 -0.84 10.15 -39.25 -0.40 -1.24 15 21 C 0.06 0.65 7.31 -38.88 -0.28 0.37 15 22 F -0.12 -1.36 14.65 2.25 0.03 -1.33 15 23 N -0.39 -8.37 9.98 -7.90 -0.08 -8.45 15 24 H 0.28 7.21 8.31 -40.82 -0.34 6.87 15 25 H 0.41 11.43 7.38 -40.82 -0.30 11.13 15 26 H 0.19 3.22 8.02 -52.48 -0.42 2.80 15 27 H 0.17 1.30 8.06 -52.49 -0.42 0.88 15 28 H 0.15 0.54 8.06 -52.49 -0.42 0.11 15 29 H 0.15 0.76 8.06 -52.49 -0.42 0.34 15 LS Contribution 289.16 15.07 4.36 4.36 Total: -1.00 -34.18 289.16 -6.32 -40.50 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -1.50 Total: 7.97 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -2.53 Total: 2.88 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.48 Total: -53.55 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.08 Total: -17.34 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.03 Total: -1.33 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -2.22 Total: 0.46 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.18 -6.32 -40.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351161567.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.782 kcal (2) G-P(sol) polarization free energy of solvation -34.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds