Wall clock time and date at job start Tue Mar 31 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00108 * 2 1 4 4 H 1.48493 * 109.46993 * 240.00286 * 3 2 1 5 5 H 1.48493 * 109.47086 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46756 * 120.00464 * 3 2 1 7 7 C 1.38985 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99879 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99954 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99763 * 179.97438 * 9 7 2 11 11 O 1.21654 * 119.99967 * 0.02562 * 10 9 7 12 12 C 1.47241 * 119.99649 * 179.97438 * 10 9 7 13 13 C 1.36383 * 122.56119 * 180.02562 * 12 10 9 14 14 S 1.71007 * 108.99290 * 180.02562 * 13 12 10 15 15 C 1.75969 * 90.63562 * 0.02562 * 14 13 12 16 16 C 1.47861 * 125.21898 * 180.26727 * 15 14 13 17 17 N 1.32821 * 119.75673 * 179.41230 * 16 15 14 18 18 C 1.31666 * 121.62296 * 179.74768 * 17 16 15 19 19 C 1.38376 * 120.97101 * 0.53520 * 18 17 16 20 20 C 1.38692 * 119.42308 * 359.74095 * 19 18 17 21 21 C 1.38684 * 118.49642 * 359.97438 * 20 19 18 22 22 F 1.35097 * 120.49841 * 179.97438 * 21 20 19 23 23 N 1.29804 * 109.56212 * 359.97438 * 15 14 13 24 24 H 0.97003 * 119.99532 * 359.97438 * 1 2 3 25 25 H 0.96998 * 119.99834 * 0.02562 * 9 7 2 26 26 H 1.08009 * 125.50361 * 0.03388 * 13 12 10 27 27 H 1.07996 * 119.51164 * 180.27476 * 18 17 16 28 28 H 1.07997 * 120.29303 * 179.71210 * 19 18 17 29 29 H 1.07993 * 120.75030 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0090 -1.2037 -0.0005 8 1 3.0890 -1.2037 -0.0010 9 7 1.3242 -2.3896 -0.0005 10 6 1.9981 -3.5568 -0.0016 11 8 3.2147 -3.5568 -0.0021 12 6 1.2618 -4.8319 -0.0010 13 6 1.8902 -6.0424 -0.0015 14 16 0.7115 -7.2813 -0.0013 15 6 -0.5768 -6.0826 -0.0014 16 6 -2.0239 -6.3861 0.0044 17 7 -2.9057 -5.3929 0.0156 18 6 -4.2025 -5.6210 0.0161 19 6 -4.6982 -6.9129 0.0160 20 6 -3.8145 -7.9818 0.0099 21 6 -2.4536 -7.7152 0.0035 22 9 -1.5569 -8.7257 -0.0021 23 7 -0.0618 -4.8911 -0.0010 24 1 -0.4849 0.8401 0.0004 25 1 0.3543 -2.3895 -0.0005 26 1 2.9596 -6.1940 -0.0018 27 1 -4.8892 -4.7876 0.0208 28 1 -5.7640 -7.0874 0.0210 29 1 -4.1780 -8.9988 0.0092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351161567.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:52 Heat of formation + Delta-G solvation = -18.934125 kcal Electronic energy + Delta-G solvation = -19681.202344 eV Core-core repulsion = 16223.999893 eV Total energy + Delta-G solvation = -3457.202451 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 293.037 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.23422 -41.44192 -40.80958 -39.21679 -36.15597 -33.92358 -33.39557 -32.83533 -30.67906 -28.03287 -26.71052 -25.00719 -24.44665 -22.38918 -20.64051 -20.13783 -19.63802 -18.66561 -18.05241 -17.81227 -17.20426 -17.14813 -16.79337 -16.18506 -15.93321 -15.59848 -15.11379 -15.00979 -14.86992 -14.42563 -14.30025 -14.12574 -13.63060 -13.33061 -12.97205 -12.79016 -12.52162 -12.13308 -11.63094 -11.25176 -11.03385 -10.84207 -10.71498 -10.61852 -10.37400 -10.16385 -9.44988 -8.57648 -6.05945 -1.02318 -0.09221 0.04433 0.11536 0.47778 1.08739 1.38240 1.47872 1.52224 2.24175 2.36707 2.46866 2.65735 2.91979 3.15023 3.20245 3.39259 3.63207 3.79894 3.93997 4.17465 4.25065 4.43007 4.56224 4.78518 4.88011 4.98239 5.29088 5.53823 5.83818 6.30427 6.51699 6.83131 6.94557 7.37746 7.90857 8.58994 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.004426 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.135900 B = 6324.159902 C = 7687.445925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.012 4.012 3 Si 1.009 2.991 4 H -0.266 1.266 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.345 4.345 8 H 0.091 0.909 9 N -0.536 5.536 10 C 0.486 3.514 11 O -0.631 6.631 12 C 0.007 3.993 13 C -0.240 4.240 14 S 0.299 5.701 15 C 0.042 3.958 16 C 0.138 3.862 17 N -0.469 5.469 18 C 0.087 3.913 19 C -0.109 4.109 20 C -0.090 4.090 21 C 0.057 3.943 22 F -0.119 7.119 23 N -0.435 5.435 24 H 0.284 0.716 25 H 0.401 0.599 26 H 0.198 0.802 27 H 0.191 0.809 28 H 0.201 0.799 29 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.155 -19.260 0.026 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.213 4.213 3 Si 0.830 3.170 4 H -0.191 1.191 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.474 4.474 8 H 0.109 0.891 9 N -0.168 5.168 10 C 0.272 3.728 11 O -0.520 6.520 12 C -0.129 4.129 13 C -0.383 4.383 14 S 0.556 5.444 15 C -0.234 4.234 16 C -0.001 4.001 17 N -0.179 5.179 18 C -0.073 4.073 19 C -0.129 4.129 20 C -0.116 4.116 21 C 0.033 3.967 22 F -0.097 7.097 23 N -0.151 5.151 24 H 0.094 0.906 25 H 0.236 0.764 26 H 0.215 0.785 27 H 0.208 0.792 28 H 0.218 0.782 29 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -13.441 -18.865 0.033 23.163 hybrid contribution 0.653 1.034 -0.007 1.223 sum -12.788 -17.831 0.027 21.943 Atomic orbital electron populations 1.69756 1.07425 1.30151 1.47215 1.26422 0.96649 1.03239 0.95037 0.84783 0.77696 0.75133 0.79424 1.19062 1.18887 1.19070 1.19913 0.93296 0.83536 1.50672 0.89126 1.41912 1.09977 1.04667 1.60271 1.17266 0.86583 0.83094 0.85820 1.90553 1.13916 1.87350 1.60206 1.20526 0.88153 0.95500 1.08750 1.27295 1.08225 0.96414 1.06392 1.83217 0.91875 1.05674 1.63652 1.25848 0.97953 0.91430 1.08138 1.18635 0.89106 0.89019 1.03389 1.67751 1.04827 1.34886 1.10402 1.23603 0.89875 0.99373 0.94407 1.22789 1.03794 0.90878 0.95428 1.22092 0.88396 1.04102 0.97020 1.18759 0.89537 0.82998 1.05436 1.91469 1.66833 1.57733 1.93699 1.66854 1.10068 1.25157 1.12975 0.90627 0.76423 0.78487 0.79175 0.78219 0.78629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.62 13.05 21.67 0.28 -52.34 15 2 C -0.01 -0.66 5.50 84.93 0.47 -0.19 15 3 Si 1.01 44.30 29.55 68.60 2.03 46.33 15 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 5 H -0.26 -10.78 7.11 99.48 0.71 -10.07 15 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 7 C -0.34 -21.26 9.68 84.07 0.81 -20.45 15 8 H 0.09 5.74 7.15 -2.91 -0.02 5.72 15 9 N -0.54 -32.44 5.28 -310.13 -1.64 -34.08 15 10 C 0.49 27.99 7.75 86.61 0.67 28.67 15 11 O -0.63 -38.93 16.25 -4.20 -0.07 -39.00 15 12 C 0.01 0.35 6.68 40.98 0.27 0.62 15 13 C -0.24 -8.99 10.63 67.39 0.72 -8.27 15 14 S 0.30 8.41 20.69 -56.49 -1.17 7.24 15 15 C 0.04 1.51 7.38 87.54 0.65 2.16 15 16 C 0.14 4.15 6.75 41.89 0.28 4.43 15 17 N -0.47 -14.53 10.25 -184.90 -1.90 -16.43 15 18 C 0.09 1.62 11.17 84.75 0.95 2.57 15 19 C -0.11 -1.05 10.11 22.41 0.23 -0.83 15 20 C -0.09 -1.03 10.15 22.48 0.23 -0.80 15 21 C 0.06 1.18 7.31 22.72 0.17 1.35 15 22 F -0.12 -2.35 14.65 44.97 0.66 -1.69 15 23 N -0.43 -19.79 9.98 -178.91 -1.79 -21.58 15 24 H 0.28 15.11 8.31 -92.71 -0.77 14.34 15 25 H 0.40 24.43 7.38 -92.71 -0.68 23.75 15 26 H 0.20 6.81 8.02 -2.91 -0.02 6.79 15 27 H 0.19 2.50 8.06 -2.91 -0.02 2.47 15 28 H 0.20 -0.04 8.06 -2.91 -0.02 -0.06 15 29 H 0.20 0.57 8.06 -2.91 -0.02 0.55 15 Total: -1.00 -82.58 289.16 2.40 -80.18 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.55 Total: 22.12 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 5.44 Total: 9.26 kcal Atomic # 7 Polarization: -119.39 SS G_CDS: -5.04 Total: -124.43 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -0.07 Total: -39.00 kcal Atomic # 9 Polarization: -2.35 SS G_CDS: 0.66 Total: -1.69 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 8.41 SS G_CDS: -1.17 Total: 7.24 kcal Total: -82.58 2.40 -80.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351161567.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.244 kcal (2) G-P(sol) polarization free energy of solvation -82.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds