Wall clock time and date at job start Tue Mar 31 2020 06:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 O 1.42899 * 109.47038 * 299.72024 * 9 7 2 12 12 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 13 13 S 1.81395 * 109.47348 * 184.99940 * 12 9 7 14 14 C 1.76196 * 103.00334 * 179.97438 * 13 12 9 15 15 C 1.39192 * 119.71538 * 179.72503 * 14 13 12 16 16 C 1.38272 * 119.09478 * 179.77569 * 15 14 13 17 17 C 1.38901 * 118.51144 * 0.48788 * 16 15 14 18 18 C 1.50705 * 120.32698 * 179.72436 * 17 16 15 19 19 F 1.39905 * 109.46621 * 180.02562 * 18 17 16 20 20 F 1.39892 * 109.47877 * 300.02758 * 18 17 16 21 21 F 1.39902 * 109.46863 * 60.03320 * 18 17 16 22 22 C 1.38031 * 119.34329 * 359.75647 * 17 16 15 23 23 N 1.31960 * 120.85603 * 359.97438 * 22 17 16 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 0.96699 * 113.99712 * 300.00343 * 11 9 7 26 26 H 1.09009 * 109.46866 * 305.00034 * 12 9 7 27 27 H 1.09003 * 109.47260 * 64.99350 * 12 9 7 28 28 H 1.08008 * 120.45359 * 0.02562 * 15 14 13 29 29 H 1.08004 * 120.74172 * 180.24392 * 16 15 14 30 30 H 1.08000 * 119.57041 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 8 0.4293 -2.5801 1.1610 12 6 2.2451 -3.6622 -0.0104 13 16 1.3430 -5.2282 -0.1665 14 6 2.6310 -6.4304 -0.1552 15 6 2.3140 -7.7822 -0.2536 16 6 3.3351 -8.7144 -0.2482 17 6 4.6439 -8.2635 -0.1338 18 6 5.7880 -9.2443 -0.1173 19 9 6.9961 -8.5495 0.0057 20 9 5.6392 -10.1164 0.9663 21 9 5.7910 -9.9774 -1.3089 22 6 4.8862 -6.9082 -0.0348 23 7 3.8924 -6.0403 -0.0481 24 1 -0.4850 0.8401 -0.0004 25 1 0.9214 -2.5384 1.9924 26 1 2.9293 -3.5515 -0.8518 27 1 2.8113 -3.6602 0.9210 28 1 1.2846 -8.0983 -0.3371 29 1 3.1196 -9.7698 -0.3270 30 1 5.9024 -6.5536 0.0546 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352167668.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:43 Heat of formation + Delta-G solvation = -173.769777 kcal Electronic energy + Delta-G solvation = -20192.541280 eV Core-core repulsion = 16277.935465 eV Total energy + Delta-G solvation = -3914.605815 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.044 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.37893 -47.90322 -47.83787 -40.23633 -36.00232 -33.28679 -32.25300 -32.02996 -29.80092 -26.69792 -25.42034 -24.00859 -22.91345 -21.11346 -18.82353 -18.71044 -18.60391 -17.89355 -17.23304 -16.50442 -15.04255 -14.83298 -14.71556 -14.66238 -14.56292 -14.52364 -14.30186 -14.27846 -14.04618 -14.00471 -13.94140 -13.46944 -13.27089 -12.44854 -11.99672 -11.66407 -11.30402 -10.95782 -10.94840 -10.43515 -10.34025 -10.00638 -9.95558 -9.79255 -9.26112 -8.69079 -8.39304 -7.43107 -6.13009 -4.33255 0.45426 0.96337 1.63797 2.43436 2.70281 3.23811 3.26644 3.29302 3.31454 3.50222 3.77769 4.20123 4.30022 4.31441 4.47718 4.75908 4.87773 5.14219 5.40782 5.55220 5.61307 5.77782 5.96408 6.11808 6.16553 6.60917 7.46703 7.49680 7.70100 7.96515 8.67902 9.20830 9.43118 10.91075 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.030703 B = 0.003223 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.750697 B = 8685.404359 C = 9329.786595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.081 3.919 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.571 4.571 8 H 0.060 0.940 9 C 0.243 3.757 10 H 0.066 0.934 11 O -0.559 6.559 12 C -0.112 4.112 13 S -0.044 6.044 14 C 0.148 3.852 15 C -0.163 4.163 16 C -0.007 4.007 17 C -0.270 4.270 18 C 0.520 3.480 19 F -0.177 7.177 20 F -0.178 7.178 21 F -0.178 7.178 22 C 0.173 3.827 23 N -0.488 5.488 24 H 0.264 0.736 25 H 0.348 0.652 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.150 0.850 29 H 0.146 0.854 30 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.399 -18.192 -0.189 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.126 4.126 3 Si 0.723 3.277 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.611 4.611 8 H 0.078 0.922 9 C 0.183 3.817 10 H 0.084 0.916 11 O -0.362 6.362 12 C -0.260 4.260 13 S 0.204 5.796 14 C -0.100 4.100 15 C -0.190 4.190 16 C -0.035 4.035 17 C -0.279 4.279 18 C 0.465 3.535 19 F -0.158 7.158 20 F -0.159 7.159 21 F -0.159 7.159 22 C 0.011 3.989 23 N -0.201 5.201 24 H 0.074 0.926 25 H 0.193 0.807 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.168 0.832 29 H 0.163 0.837 30 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.625 -17.252 -0.673 18.493 hybrid contribution 2.468 0.002 0.369 2.496 sum 9.093 -17.250 -0.304 19.502 Atomic orbital electron populations 1.70065 1.05989 1.26951 1.46139 1.25036 0.94775 0.99261 0.93522 0.86621 0.79641 0.82617 0.78854 1.20005 1.21068 1.19989 1.21453 0.93275 0.90441 1.55899 0.92184 1.19250 0.87518 0.87936 0.86947 0.91606 1.86594 1.38198 1.96072 1.15327 1.24911 1.03015 0.92371 1.05713 1.86090 1.07684 0.99785 1.86056 1.24055 0.96050 0.96833 0.93042 1.21677 1.00923 0.91561 1.04865 1.21153 0.90480 1.00647 0.91202 1.20798 0.94074 0.95602 1.17408 1.18041 0.81928 0.79812 0.73712 1.93170 1.47962 1.78951 1.95718 1.93214 1.95684 1.71352 1.55662 1.93216 1.96664 1.78895 1.47149 1.22683 0.99334 0.87520 0.89372 1.68462 0.98750 1.37050 1.15851 0.92642 0.80745 0.89131 0.89769 0.83228 0.83659 0.81444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.51 12.84 55.43 0.71 -23.80 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 3 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.57 -15.04 8.76 -34.44 -0.30 -15.34 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.24 5.88 2.82 -27.88 -0.08 5.80 16 10 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 11 O -0.56 -13.73 12.49 -35.23 -0.44 -14.17 16 12 C -0.11 -2.21 4.80 37.16 0.18 -2.03 16 13 S -0.04 -0.76 21.69 -107.50 -2.33 -3.09 16 14 C 0.15 2.22 7.00 -16.93 -0.12 2.10 16 15 C -0.16 -1.93 9.84 -39.21 -0.39 -2.31 16 16 C -0.01 -0.07 9.76 -39.32 -0.38 -0.46 16 17 C -0.27 -3.00 5.38 -104.45 -0.56 -3.56 16 18 C 0.52 5.31 3.33 36.01 0.12 5.43 16 19 F -0.18 -1.83 15.99 2.25 0.04 -1.79 16 20 F -0.18 -1.84 17.25 2.25 0.04 -1.81 16 21 F -0.18 -1.85 17.25 2.25 0.04 -1.81 16 22 C 0.17 2.17 10.59 -17.57 -0.19 1.98 16 23 N -0.49 -7.49 9.43 -12.11 -0.11 -7.61 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.35 7.57 9.04 45.56 0.41 7.98 16 26 H 0.09 1.80 8.14 -51.92 -0.42 1.38 16 27 H 0.08 1.64 8.14 -51.92 -0.42 1.22 16 28 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 29 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 30 H 0.17 1.74 7.15 -52.49 -0.38 1.36 16 LS Contribution 298.26 15.07 4.49 4.49 Total: -1.00 -29.16 298.26 -6.02 -35.18 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -1.62 Total: 5.17 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.81 Total: -6.28 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.60 Total: -31.41 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.44 Total: -14.17 kcal Atomic # 9 Polarization: -5.52 SS G_CDS: 0.11 Total: -5.40 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -2.33 Total: -3.09 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.16 -6.02 -35.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352167668.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.593 kcal (2) G-P(sol) polarization free energy of solvation -29.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds