Wall clock time and date at job start Tue Mar 31 2020 06:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 11 11 O 1.42899 * 109.47038 * 299.72024 * 9 7 2 12 12 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 13 13 S 1.81395 * 109.47348 * 184.99940 * 12 9 7 14 14 C 1.76196 * 103.00334 * 179.97438 * 13 12 9 15 15 C 1.39192 * 119.71538 * 179.72503 * 14 13 12 16 16 C 1.38272 * 119.09478 * 179.77569 * 15 14 13 17 17 C 1.38901 * 118.51144 * 0.48788 * 16 15 14 18 18 C 1.50705 * 120.32698 * 179.72436 * 17 16 15 19 19 F 1.39905 * 109.46621 * 180.02562 * 18 17 16 20 20 F 1.39892 * 109.47877 * 300.02758 * 18 17 16 21 21 F 1.39902 * 109.46863 * 60.03320 * 18 17 16 22 22 C 1.38031 * 119.34329 * 359.75647 * 17 16 15 23 23 N 1.31960 * 120.85603 * 359.97438 * 22 17 16 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 0.96699 * 113.99712 * 300.00343 * 11 9 7 26 26 H 1.09009 * 109.46866 * 305.00034 * 12 9 7 27 27 H 1.09003 * 109.47260 * 64.99350 * 12 9 7 28 28 H 1.08008 * 120.45359 * 0.02562 * 15 14 13 29 29 H 1.08004 * 120.74172 * 180.24392 * 16 15 14 30 30 H 1.08000 * 119.57041 * 179.97438 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6244 -2.5529 -0.8956 11 8 0.4293 -2.5801 1.1610 12 6 2.2451 -3.6622 -0.0104 13 16 1.3430 -5.2282 -0.1665 14 6 2.6310 -6.4304 -0.1552 15 6 2.3140 -7.7822 -0.2536 16 6 3.3351 -8.7144 -0.2482 17 6 4.6439 -8.2635 -0.1338 18 6 5.7880 -9.2443 -0.1173 19 9 6.9961 -8.5495 0.0057 20 9 5.6392 -10.1164 0.9663 21 9 5.7910 -9.9774 -1.3089 22 6 4.8862 -6.9082 -0.0348 23 7 3.8924 -6.0403 -0.0481 24 1 -0.4850 0.8401 -0.0004 25 1 0.9214 -2.5384 1.9924 26 1 2.9293 -3.5515 -0.8518 27 1 2.8113 -3.6602 0.9210 28 1 1.2846 -8.0983 -0.3371 29 1 3.1196 -9.7698 -0.3270 30 1 5.9024 -6.5536 0.0546 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352167668.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:43 Heat of formation + Delta-G solvation = -192.707931 kcal Electronic energy + Delta-G solvation = -20193.362500 eV Core-core repulsion = 16277.935465 eV Total energy + Delta-G solvation = -3915.427035 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.044 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -51.20412 -48.72638 -48.65916 -41.23713 -37.92680 -34.30900 -34.27077 -32.99819 -31.61004 -27.73555 -27.26007 -24.98576 -23.93004 -22.90359 -19.70768 -19.52891 -19.46025 -19.31410 -18.89870 -17.50691 -16.71451 -16.38609 -16.25680 -15.87632 -15.70727 -15.61259 -15.35809 -15.24222 -15.10018 -14.92255 -14.86144 -14.81735 -14.25115 -13.90579 -13.41818 -13.28362 -13.00919 -12.76040 -12.66968 -12.08348 -11.64508 -11.43882 -11.12005 -10.97634 -10.84145 -10.72347 -10.33014 -8.72592 -8.18130 -6.45307 -0.53383 0.04080 0.38881 1.26485 1.42907 1.43472 1.52087 1.58611 2.27968 2.38721 2.64285 2.93290 3.08448 3.35053 3.36929 3.65247 3.79195 3.98702 4.07576 4.22268 4.29440 4.53667 4.64541 4.73905 4.91986 5.24217 5.49260 5.63438 5.95544 6.47833 6.63785 7.26992 7.44251 8.86266 Molecular weight = 293.04amu Principal moments of inertia in cm(-1) A = 0.030703 B = 0.003223 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.750697 B = 8685.404359 C = 9329.786595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.030 3.970 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.586 4.586 8 H 0.063 0.937 9 C 0.245 3.755 10 H 0.033 0.967 11 O -0.572 6.572 12 C -0.095 4.095 13 S -0.059 6.059 14 C 0.128 3.872 15 C -0.155 4.155 16 C 0.003 3.997 17 C -0.260 4.260 18 C 0.529 3.471 19 F -0.177 7.177 20 F -0.175 7.175 21 F -0.176 7.176 22 C 0.162 3.838 23 N -0.517 5.517 24 H 0.264 0.736 25 H 0.359 0.641 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.173 0.827 29 H 0.184 0.816 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.779 -19.904 -0.073 22.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.174 4.174 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.625 4.625 8 H 0.081 0.919 9 C 0.186 3.814 10 H 0.051 0.949 11 O -0.376 6.376 12 C -0.244 4.244 13 S 0.187 5.813 14 C -0.119 4.119 15 C -0.181 4.181 16 C -0.024 4.024 17 C -0.268 4.268 18 C 0.473 3.527 19 F -0.158 7.158 20 F -0.157 7.157 21 F -0.157 7.157 22 C 0.000 4.000 23 N -0.230 5.230 24 H 0.073 0.927 25 H 0.205 0.795 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.190 0.810 29 H 0.201 0.799 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 8.042 -18.981 -0.553 20.622 hybrid contribution 2.127 0.321 0.332 2.177 sum 10.169 -18.660 -0.221 21.252 Atomic orbital electron populations 1.70197 1.07652 1.27785 1.47658 1.25889 0.95516 1.02896 0.93056 0.85553 0.78328 0.78174 0.79190 1.19313 1.20880 1.19116 1.21860 0.93642 0.91781 1.55219 0.91869 1.18983 0.87394 0.89352 0.85708 0.94934 1.86531 1.38903 1.96223 1.15968 1.24332 1.01601 0.93108 1.05353 1.85904 1.08634 0.98899 1.87856 1.23875 0.95442 0.97101 0.95490 1.21933 1.02620 0.90181 1.03392 1.21588 0.89444 1.02193 0.89167 1.20968 0.94994 0.95265 1.15591 1.17822 0.81531 0.79545 0.73761 1.93177 1.47937 1.78984 1.95714 1.93226 1.95656 1.71212 1.55585 1.93228 1.96632 1.78783 1.47062 1.22949 0.99413 0.88056 0.89577 1.68337 0.99385 1.38585 1.16705 0.92689 0.79545 0.89799 0.89789 0.80998 0.79888 0.79924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.46 12.84 21.45 0.28 -52.18 16 2 C 0.03 1.63 5.40 84.66 0.46 2.09 16 3 Si 0.96 42.36 29.54 68.60 2.03 44.39 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.59 -31.41 8.76 25.60 0.22 -31.19 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.24 12.25 2.82 29.85 0.08 12.33 16 10 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16 11 O -0.57 -28.89 12.49 -148.98 -1.86 -30.75 16 12 C -0.10 -3.87 4.80 71.98 0.35 -3.52 16 13 S -0.06 -2.06 21.69 -56.49 -1.23 -3.28 16 14 C 0.13 3.72 7.00 84.83 0.59 4.31 16 15 C -0.15 -3.24 9.84 22.51 0.22 -3.02 16 16 C 0.00 0.06 9.76 22.44 0.22 0.27 16 17 C -0.26 -5.02 5.38 -19.75 -0.11 -5.13 16 18 C 0.53 9.19 3.33 71.24 0.24 9.43 16 19 F -0.18 -3.22 15.99 44.97 0.72 -2.50 16 20 F -0.18 -3.08 17.25 44.97 0.78 -2.30 16 21 F -0.18 -3.09 17.25 44.97 0.78 -2.31 16 22 C 0.16 3.76 10.59 84.62 0.90 4.66 16 23 N -0.52 -15.41 9.43 -192.22 -1.81 -17.23 16 24 H 0.26 14.63 8.31 -92.70 -0.77 13.86 16 25 H 0.36 15.99 9.04 -74.06 -0.67 15.32 16 26 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 27 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 28 H 0.17 2.78 8.06 -2.91 -0.02 2.75 16 29 H 0.18 1.72 8.06 -2.91 -0.02 1.69 16 30 H 0.18 3.49 7.15 -2.91 -0.02 3.47 16 Total: -1.00 -63.25 298.26 3.38 -59.87 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.53 Total: 16.06 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 3.17 Total: -9.76 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -1.54 Total: -69.41 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -1.86 Total: -30.75 kcal Atomic # 9 Polarization: -9.38 SS G_CDS: 2.27 Total: -7.11 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: -2.06 SS G_CDS: -1.23 Total: -3.28 kcal Total: -63.25 3.38 -59.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352167668.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.833 kcal (2) G-P(sol) polarization free energy of solvation -63.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds