Wall clock time and date at job start Tue Mar 31 2020 06:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99859 * 2 1 4 4 H 1.48499 * 109.46951 * 269.99989 * 3 2 1 5 5 H 1.48497 * 109.47259 * 30.00292 * 3 2 1 6 6 H 1.48503 * 109.46913 * 150.00286 * 3 2 1 7 7 C 1.37876 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00164 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46868 * 179.97438 * 10 9 7 12 12 O 1.21264 * 119.99668 * 0.02562 * 11 10 9 13 13 N 1.34768 * 119.99770 * 180.02562 * 11 10 9 14 14 C 1.38467 * 119.99993 * 180.02562 * 13 11 10 15 15 N 1.30855 * 125.05469 * 180.02562 * 14 13 11 16 16 C 1.35845 * 109.63098 * 179.70139 * 15 14 13 17 17 C 1.39772 * 133.40615 * 179.51664 * 16 15 14 18 18 C 1.37655 * 119.79759 * 180.43118 * 17 16 15 19 19 C 1.38725 * 120.51378 * 0.28308 * 18 17 16 20 20 C 1.38034 * 120.42595 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 120.08538 * 180.02562 * 20 19 18 22 22 C 1.38792 * 119.82850 * 0.02562 * 20 19 18 23 23 N 1.36481 * 125.05392 * 0.02562 * 14 13 11 24 24 H 0.97004 * 126.37717 * 0.06222 * 23 14 13 25 25 H 0.97000 * 120.00548 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46607 * 59.99947 * 9 7 2 27 27 H 1.08999 * 109.46831 * 300.00350 * 9 7 2 28 28 H 1.08999 * 109.46831 * 60.00646 * 10 9 7 29 29 H 1.08994 * 109.47160 * 299.99833 * 10 9 7 30 30 H 0.97007 * 120.00288 * 0.02562 * 13 11 10 31 31 H 1.08002 * 120.10446 * 0.71478 * 17 16 15 32 32 H 1.07996 * 119.74095 * 180.30794 * 18 17 16 33 33 H 1.07997 * 119.78818 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4919 -4.9672 -0.0012 12 8 0.2792 -4.9671 -0.0003 13 7 2.1657 -6.1343 -0.0016 14 6 1.4735 -7.3335 -0.0016 15 7 2.0254 -8.5199 -0.0014 16 6 1.0578 -9.4734 0.0052 17 6 1.0863 -10.8708 -0.0003 18 6 -0.0940 -11.5792 0.0006 19 6 -1.3129 -10.9168 0.0010 20 6 -1.3589 -9.5373 0.0011 21 17 -2.8892 -8.7175 0.0023 22 6 -0.1785 -8.8072 0.0002 23 7 0.1140 -7.4538 -0.0016 24 1 -0.5280 -6.7265 -0.0025 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8726 -3.6047 0.8878 29 1 2.8713 -3.6039 -0.8922 30 1 3.1358 -6.1343 -0.0019 31 1 2.0315 -11.3934 -0.0006 32 1 -0.0709 -12.6589 0.0013 33 1 -2.2318 -11.4842 0.0021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360308524.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:35 Heat of formation + Delta-G solvation = 21.301581 kcal Electronic energy + Delta-G solvation = -19823.545542 eV Core-core repulsion = 16489.504441 eV Total energy + Delta-G solvation = -3334.041101 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.39923 -39.88883 -37.66209 -36.47802 -34.76696 -33.74213 -33.03033 -31.30385 -29.90873 -29.08641 -26.19492 -23.56368 -22.78559 -21.92041 -21.31390 -20.26192 -18.50470 -17.63701 -17.12106 -16.72625 -16.14581 -15.83441 -15.06220 -15.02283 -14.73773 -14.53424 -14.47458 -13.83482 -13.23099 -12.63640 -12.49091 -12.33335 -12.00828 -11.64145 -11.41823 -11.21684 -11.04562 -10.95796 -10.72829 -10.28116 -10.27000 -10.17576 -10.12401 -9.67908 -9.27977 -8.46602 -8.39970 -8.03845 -6.09937 -4.15540 0.61971 1.23924 1.93532 2.14742 2.21586 2.96542 3.04860 3.25758 3.32684 3.34631 3.58642 4.30329 4.36592 4.67394 4.74588 4.94345 5.04053 5.10058 5.25883 5.47539 5.64032 5.67982 5.88055 5.89884 6.01187 6.14260 6.24079 6.42376 6.56519 6.95649 7.34896 7.55587 7.60937 7.77879 7.87632 7.92493 8.23512 8.91369 9.49399 11.00856 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.029702 B = 0.003088 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.482922 B = 9066.303605 C = 9988.338621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.532 4.532 8 H 0.058 0.942 9 C 0.035 3.965 10 C -0.124 4.124 11 C 0.521 3.479 12 O -0.516 6.516 13 N -0.639 5.639 14 C 0.529 3.471 15 N -0.524 5.524 16 C 0.085 3.915 17 C -0.069 4.069 18 C -0.115 4.115 19 C -0.104 4.104 20 C -0.020 4.020 21 Cl -0.069 7.069 22 C 0.047 3.953 23 N -0.583 5.583 24 H 0.440 0.560 25 H 0.263 0.737 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.434 0.566 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.109 -21.844 0.003 21.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.570 4.570 8 H 0.077 0.923 9 C -0.002 4.002 10 C -0.164 4.164 11 C 0.311 3.689 12 O -0.387 6.387 13 N -0.293 5.293 14 C 0.173 3.827 15 N -0.254 5.254 16 C -0.035 4.035 17 C -0.090 4.090 18 C -0.136 4.136 19 C -0.125 4.125 20 C -0.049 4.049 21 Cl -0.041 7.041 22 C -0.065 4.065 23 N -0.207 5.207 24 H 0.290 0.710 25 H 0.072 0.928 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.274 0.726 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.806 -21.658 0.005 21.673 hybrid contribution -0.370 1.602 -0.008 1.645 sum 0.436 -20.056 -0.003 20.061 Atomic orbital electron populations 1.69977 1.06114 1.26885 1.49667 1.25019 0.94851 0.99390 0.95010 0.86549 0.79767 0.83235 0.78171 1.20574 1.21156 1.19779 1.21140 0.93024 0.90666 1.52152 0.92329 1.18972 0.93078 0.89233 0.98935 1.21995 1.01026 0.89454 1.03891 1.22342 0.88687 0.85176 0.72689 1.90485 1.14761 1.86279 1.47208 1.43279 1.11746 1.01122 1.73132 1.19656 0.79577 0.88112 0.95362 1.70618 1.29897 0.95123 1.29773 1.18797 0.86924 0.93885 1.03863 1.20297 0.99154 0.89576 0.99928 1.20797 0.90772 1.00053 1.01929 1.20770 0.99342 0.90542 1.01831 1.19798 0.83836 0.92201 1.09099 1.98389 1.29482 1.79166 1.97016 1.18444 0.95444 0.84051 1.08513 1.43617 1.07219 1.07306 1.62545 0.71038 0.92770 0.95559 0.95541 0.88764 0.88755 0.72553 0.84654 0.84404 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.53 -14.11 9.11 -34.44 -0.31 -14.43 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.04 0.87 4.26 -27.88 -0.12 0.75 16 10 C -0.12 -2.15 5.64 -27.88 -0.16 -2.31 16 11 C 0.52 8.68 7.79 -10.99 -0.09 8.59 16 12 O -0.52 -10.32 13.39 5.57 0.07 -10.25 16 13 N -0.64 -8.62 5.38 -12.60 -0.07 -8.68 16 14 C 0.53 8.06 8.71 -319.45 -2.78 5.28 16 15 N -0.52 -7.86 11.31 -11.42 -0.13 -7.99 16 16 C 0.09 1.20 7.22 -84.69 -0.61 0.59 16 17 C -0.07 -0.73 10.10 -39.22 -0.40 -1.13 16 18 C -0.11 -0.98 10.01 -39.61 -0.40 -1.38 16 19 C -0.10 -1.01 9.81 -39.48 -0.39 -1.39 16 20 C -0.02 -0.25 6.33 -39.45 -0.25 -0.50 16 21 Cl -0.07 -0.86 28.96 -51.86 -1.50 -2.37 16 22 C 0.05 0.68 7.09 -83.83 -0.59 0.09 16 23 N -0.58 -9.18 5.84 -11.07 -0.06 -9.25 16 24 H 0.44 7.37 6.34 -40.82 -0.26 7.11 16 25 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 26 H 0.03 0.70 8.10 -51.93 -0.42 0.28 16 27 H 0.03 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 30 H 0.43 4.35 8.82 -40.82 -0.36 3.99 16 31 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 33 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 308.42 15.07 4.65 4.65 Total: -1.00 -31.91 308.42 -10.63 -42.54 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -3.12 Total: 5.31 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -6.19 Total: -4.28 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.47 Total: -51.41 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.37 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.91 -10.63 -42.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360308524.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.844 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds