Wall clock time and date at job start Tue Mar 31 2020 06:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99859 * 2 1 4 4 H 1.48499 * 109.46951 * 269.99989 * 3 2 1 5 5 H 1.48497 * 109.47259 * 30.00292 * 3 2 1 6 6 H 1.48503 * 109.46913 * 150.00286 * 3 2 1 7 7 C 1.37876 * 120.00229 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00164 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47248 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46868 * 179.97438 * 10 9 7 12 12 O 1.21264 * 119.99668 * 0.02562 * 11 10 9 13 13 N 1.34768 * 119.99770 * 180.02562 * 11 10 9 14 14 C 1.38467 * 119.99993 * 180.02562 * 13 11 10 15 15 N 1.30855 * 125.05469 * 180.02562 * 14 13 11 16 16 C 1.35845 * 109.63098 * 179.70139 * 15 14 13 17 17 C 1.39772 * 133.40615 * 179.51664 * 16 15 14 18 18 C 1.37655 * 119.79759 * 180.43118 * 17 16 15 19 19 C 1.38725 * 120.51378 * 0.28308 * 18 17 16 20 20 C 1.38034 * 120.42595 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 120.08538 * 180.02562 * 20 19 18 22 22 C 1.38792 * 119.82850 * 0.02562 * 20 19 18 23 23 N 1.36481 * 125.05392 * 0.02562 * 14 13 11 24 24 H 0.97004 * 126.37717 * 0.06222 * 23 14 13 25 25 H 0.97000 * 120.00548 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46607 * 59.99947 * 9 7 2 27 27 H 1.08999 * 109.46831 * 300.00350 * 9 7 2 28 28 H 1.08999 * 109.46831 * 60.00646 * 10 9 7 29 29 H 1.08994 * 109.47160 * 299.99833 * 10 9 7 30 30 H 0.97007 * 120.00288 * 0.02562 * 13 11 10 31 31 H 1.08002 * 120.10446 * 0.71478 * 17 16 15 32 32 H 1.07996 * 119.74095 * 180.30794 * 18 17 16 33 33 H 1.07997 * 119.78818 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0018 11 6 1.4919 -4.9672 -0.0012 12 8 0.2792 -4.9671 -0.0003 13 7 2.1657 -6.1343 -0.0016 14 6 1.4735 -7.3335 -0.0016 15 7 2.0254 -8.5199 -0.0014 16 6 1.0578 -9.4734 0.0052 17 6 1.0863 -10.8708 -0.0003 18 6 -0.0940 -11.5792 0.0006 19 6 -1.3129 -10.9168 0.0010 20 6 -1.3589 -9.5373 0.0011 21 17 -2.8892 -8.7175 0.0023 22 6 -0.1785 -8.8072 0.0002 23 7 0.1140 -7.4538 -0.0016 24 1 -0.5280 -6.7265 -0.0025 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8726 -3.6047 0.8878 29 1 2.8713 -3.6039 -0.8922 30 1 3.1358 -6.1343 -0.0019 31 1 2.0315 -11.3934 -0.0006 32 1 -0.0709 -12.6589 0.0013 33 1 -2.2318 -11.4842 0.0021 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360308524.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:34 Heat of formation + Delta-G solvation = 2.447854 kcal Electronic energy + Delta-G solvation = -19824.363101 eV Core-core repulsion = 16489.504441 eV Total energy + Delta-G solvation = -3334.858660 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 293.067 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.45056 -41.17309 -38.61834 -37.41255 -35.96744 -35.66402 -34.08636 -33.11343 -30.80451 -30.13290 -27.95245 -24.99912 -23.71476 -23.20613 -22.52417 -21.63304 -19.58253 -19.02569 -18.26791 -18.08700 -17.35697 -17.30454 -16.49227 -16.28946 -15.97645 -15.68296 -15.34716 -15.25722 -14.56762 -14.26175 -13.91356 -13.33704 -13.24536 -12.85166 -12.84456 -12.59673 -12.51264 -12.13990 -12.08229 -11.97371 -11.74504 -11.42932 -11.34106 -11.26434 -11.22658 -10.57619 -9.34625 -9.02278 -8.20092 -6.33176 -0.31345 0.34743 0.95181 1.00718 1.12062 1.43568 1.44659 1.55575 1.81554 1.92526 2.42065 2.69169 3.14529 3.32177 3.55622 3.87272 3.93339 4.11621 4.31176 4.39387 4.47314 4.59538 4.67599 4.77647 4.97604 5.11856 5.32463 5.39431 5.48703 5.58087 5.61374 5.81977 5.92142 6.13533 6.18144 6.64320 6.74133 6.87472 7.37474 8.92221 Molecular weight = 293.07amu Principal moments of inertia in cm(-1) A = 0.029702 B = 0.003088 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.482922 B = 9066.303605 C = 9988.338621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.970 3.030 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.254 1.254 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.039 3.961 10 C -0.110 4.110 11 C 0.527 3.473 12 O -0.557 6.557 13 N -0.617 5.617 14 C 0.506 3.494 15 N -0.525 5.525 16 C 0.056 3.944 17 C -0.068 4.068 18 C -0.098 4.098 19 C -0.089 4.089 20 C -0.044 4.044 21 Cl -0.079 7.079 22 C 0.024 3.976 23 N -0.595 5.595 24 H 0.432 0.568 25 H 0.262 0.738 26 H -0.012 1.012 27 H -0.012 1.012 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.451 0.549 31 H 0.159 0.841 32 H 0.184 0.816 33 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.118 -24.054 0.010 24.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.794 3.206 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.178 1.178 7 C -0.579 4.579 8 H 0.098 0.902 9 C 0.001 3.999 10 C -0.150 4.150 11 C 0.318 3.682 12 O -0.432 6.432 13 N -0.272 5.272 14 C 0.150 3.850 15 N -0.254 5.254 16 C -0.063 4.063 17 C -0.088 4.088 18 C -0.118 4.118 19 C -0.109 4.109 20 C -0.073 4.073 21 Cl -0.051 7.051 22 C -0.087 4.087 23 N -0.218 5.218 24 H 0.279 0.721 25 H 0.071 0.929 26 H 0.006 0.994 27 H 0.007 0.993 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.294 0.706 31 H 0.177 0.823 32 H 0.201 0.799 33 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.883 -23.931 0.011 24.104 hybrid contribution -1.055 2.064 -0.012 2.318 sum 1.827 -21.867 0.000 21.943 Atomic orbital electron populations 1.70152 1.08229 1.27783 1.51507 1.26072 0.95654 1.03815 0.94745 0.85374 0.78775 0.78015 0.78427 1.19888 1.21541 1.17800 1.21694 0.94199 0.91352 1.50655 0.90192 1.18752 0.93731 0.92087 0.95338 1.21732 0.99444 0.87109 1.06666 1.22069 0.87972 0.85860 0.72331 1.90489 1.16511 1.86919 1.49276 1.42824 1.12304 0.99954 1.72105 1.19790 0.79695 0.88478 0.97029 1.70566 1.30355 0.95167 1.29360 1.19309 0.86397 0.95193 1.05392 1.20742 1.01164 0.88152 0.98768 1.21331 0.89264 1.02089 0.99094 1.21280 1.01272 0.89383 0.98924 1.20112 0.83030 0.93263 1.10914 1.98381 1.29830 1.79679 1.97164 1.18828 0.96638 0.83590 1.09594 1.43664 1.07313 1.07791 1.63021 0.72092 0.92926 0.99351 0.99327 0.85911 0.85890 0.70552 0.82318 0.79864 0.81421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.33 13.29 21.45 0.28 -57.05 16 2 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 3 Si 0.97 42.73 29.54 68.60 2.03 44.76 16 4 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 7 C -0.54 -28.80 9.11 25.60 0.23 -28.56 16 8 H 0.08 3.82 7.74 -2.91 -0.02 3.80 16 9 C 0.04 1.96 4.26 29.85 0.13 2.09 16 10 C -0.11 -3.77 5.64 29.85 0.17 -3.60 16 11 C 0.53 17.90 7.79 87.66 0.68 18.58 16 12 O -0.56 -23.63 13.39 -2.98 -0.04 -23.67 16 13 N -0.62 -16.49 5.38 -312.17 -1.68 -18.17 16 14 C 0.51 15.60 8.71 260.31 2.27 17.86 16 15 N -0.52 -15.44 11.31 -190.04 -2.15 -17.59 16 16 C 0.06 1.52 7.22 39.43 0.28 1.81 16 17 C -0.07 -1.24 10.10 22.50 0.23 -1.01 16 18 C -0.10 -1.25 10.01 22.25 0.22 -1.03 16 19 C -0.09 -1.44 9.81 22.34 0.22 -1.22 16 20 C -0.04 -1.06 6.33 22.35 0.14 -0.91 16 21 Cl -0.08 -2.00 28.96 -2.72 -0.08 -2.08 16 22 C 0.02 0.70 7.09 38.76 0.27 0.98 16 23 N -0.59 -19.50 5.84 -188.94 -1.10 -20.60 16 24 H 0.43 15.50 6.34 -92.71 -0.59 14.91 16 25 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 26 H -0.01 -0.69 8.10 -2.38 -0.02 -0.71 16 27 H -0.01 -0.68 8.10 -2.39 -0.02 -0.70 16 28 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 29 H 0.12 3.52 8.14 -2.39 -0.02 3.50 16 30 H 0.45 8.42 8.82 -92.70 -0.82 7.61 16 31 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 32 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 33 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -73.54 308.42 2.35 -71.19 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -0.23 Total: 18.07 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 5.31 Total: 5.15 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -4.65 Total: -113.42 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.04 Total: -23.67 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -0.08 Total: -2.08 kcal Total: -73.54 2.35 -71.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360308524.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.641 kcal (2) G-P(sol) polarization free energy of solvation -73.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds